Wall clock time and date at job start Tue Mar 31 2020 11:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00377 * 2 1 4 4 H 1.48501 * 109.47101 * 239.99899 * 3 2 1 5 5 H 1.48504 * 109.46703 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47283 * 119.99557 * 3 2 1 7 7 C 1.37879 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99769 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00172 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47453 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47035 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99789 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47109 * 179.97438 * 12 11 10 14 14 C 1.38226 * 119.99897 * 259.72934 * 13 12 11 15 15 C 1.38312 * 119.99567 * 179.72195 * 14 13 12 16 16 Br 1.89101 * 119.99411 * 180.27108 * 15 14 13 17 17 C 1.38353 * 120.00904 * 0.55215 * 15 14 13 18 18 C 1.38171 * 119.99914 * 359.72023 * 17 15 14 19 19 C 1.38335 * 120.00230 * 80.00079 * 13 12 11 20 20 Cl 1.73595 * 119.99937 * 0.02589 * 19 13 12 21 21 H 0.96998 * 119.99843 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.47239 * 59.99718 * 9 7 2 23 23 H 1.09005 * 109.46971 * 300.00265 * 9 7 2 24 24 H 1.08996 * 109.46863 * 59.99873 * 10 9 7 25 25 H 1.09002 * 109.46661 * 300.00050 * 10 9 7 26 26 H 1.00902 * 111.00273 * 303.95364 * 11 10 9 27 27 H 1.08992 * 109.47459 * 299.99826 * 12 11 10 28 28 H 1.09004 * 109.47040 * 59.99976 * 12 11 10 29 29 H 1.07997 * 120.00075 * 359.97438 * 14 13 12 30 30 H 1.08000 * 119.99668 * 179.70357 * 17 15 14 31 31 H 1.08007 * 119.99883 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5107 -4.9342 0.0012 12 6 2.4351 -6.0759 0.0018 13 6 1.6471 -7.3605 0.0018 14 6 1.4671 -8.0609 1.1798 15 6 0.7389 -9.2368 1.1807 16 35 0.4863 -10.1910 2.7937 17 6 0.2003 -9.7181 0.0007 18 6 0.3848 -9.0209 -1.1779 19 6 1.1085 -7.8415 -1.1781 20 17 1.3410 -6.9659 -2.6589 21 1 -0.4850 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6239 -2.5566 0.8903 24 1 2.8712 -3.6040 0.8922 25 1 2.8725 -3.6047 -0.8877 26 1 0.8733 -4.9842 0.7819 27 1 3.0637 -6.0349 -0.8877 28 1 3.0625 -6.0350 0.8923 29 1 1.8916 -7.6879 2.1001 30 1 -0.3642 -10.6388 0.0008 31 1 -0.0353 -9.3969 -2.0991 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273070016.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:33 Heat of formation + Delta-G solvation = 7.638484 kcal Electronic energy + Delta-G solvation = -15616.009609 eV Core-core repulsion = 12775.770464 eV Total energy + Delta-G solvation = -2840.239145 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.988 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -39.75039 -36.44895 -36.05919 -33.29833 -32.35551 -31.73417 -29.52821 -28.84875 -25.62433 -23.48435 -22.79729 -21.28532 -20.52955 -17.26866 -16.31231 -16.28766 -15.54301 -14.85809 -14.44545 -14.42011 -14.12445 -13.66975 -13.37581 -12.61866 -12.44197 -12.18995 -12.05753 -11.76939 -11.53379 -11.06743 -10.91798 -10.72051 -10.64410 -10.58296 -10.52101 -10.00319 -9.48488 -9.25674 -9.11024 -8.69742 -8.34570 -7.86636 -5.98985 -4.01768 0.69572 0.93286 1.31402 2.13529 3.20278 3.33861 3.38315 3.40566 4.35785 4.45863 4.48875 4.83391 4.86021 5.03430 5.19223 5.36930 5.41723 5.54272 5.71110 5.81713 5.83347 6.10042 6.31093 6.35004 6.38646 6.96405 7.40885 7.71318 7.79638 7.92467 8.08257 8.43370 9.05297 9.61917 11.12370 Molecular weight = 316.99amu Principal moments of inertia in cm(-1) A = 0.019400 B = 0.002969 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.939499 B = 9427.154126 C =10463.562286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.068 3.932 11 N -0.680 5.680 12 C 0.093 3.907 13 C -0.063 4.063 14 C -0.075 4.075 15 C -0.091 4.091 16 Br -0.049 7.049 17 C -0.084 4.084 18 C -0.110 4.110 19 C 0.001 3.999 20 Cl -0.042 7.042 21 H 0.261 0.739 22 H 0.026 0.974 23 H 0.013 0.987 24 H 0.016 0.984 25 H 0.060 0.940 26 H 0.337 0.663 27 H 0.086 0.914 28 H 0.038 0.962 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.223 -25.002 2.297 25.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.060 4.060 11 N -0.311 5.311 12 C -0.036 4.036 13 C -0.065 4.065 14 C -0.095 4.095 15 C -0.170 4.170 16 Br 0.036 6.964 17 C -0.104 4.104 18 C -0.129 4.129 19 C -0.027 4.027 20 Cl -0.013 7.013 21 H 0.071 0.929 22 H 0.044 0.956 23 H 0.032 0.968 24 H 0.035 0.965 25 H 0.078 0.922 26 H 0.155 0.845 27 H 0.104 0.896 28 H 0.056 0.944 29 H 0.157 0.843 30 H 0.157 0.843 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.925 -25.144 2.082 25.247 hybrid contribution 0.779 1.231 0.475 1.532 sum 1.704 -23.913 2.556 24.110 Atomic orbital electron populations 1.69960 1.06031 1.26704 1.50493 1.24995 0.94833 0.99186 0.95287 0.86654 0.79571 0.83146 0.78587 1.20224 1.21273 1.20293 1.21131 0.92933 0.91011 1.51084 0.92814 1.19054 0.93986 0.90282 0.97777 1.22177 0.97022 0.88057 0.98744 1.60615 1.19180 1.01392 1.49873 1.20931 0.93721 0.87210 1.01746 1.19867 0.98516 0.97001 0.91096 1.21029 0.97280 0.92985 0.98254 1.21789 1.04673 0.98064 0.92492 1.96732 1.96466 1.74054 1.29128 1.21015 0.98853 1.00060 0.90455 1.21071 0.99008 0.93910 0.98936 1.20962 0.99291 0.93727 0.88754 1.98412 1.95298 1.75538 1.32006 0.92929 0.95566 0.96828 0.96548 0.92179 0.84545 0.89582 0.94395 0.84301 0.84330 0.84097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.03 0.69 5.23 -27.88 -0.15 0.54 16 10 C 0.07 1.40 5.62 -3.82 -0.02 1.38 16 11 N -0.68 -11.78 6.49 -115.06 -0.75 -12.53 16 12 C 0.09 1.31 5.23 -4.97 -0.03 1.28 16 13 C -0.06 -0.79 5.40 -104.59 -0.56 -1.35 16 14 C -0.07 -0.84 9.41 -39.56 -0.37 -1.21 16 15 C -0.09 -0.94 6.22 -39.51 -0.25 -1.19 16 16 Br -0.05 -0.46 33.70 -68.01 -2.29 -2.76 16 17 C -0.08 -0.79 9.79 -39.56 -0.39 -1.17 16 18 C -0.11 -1.11 9.83 -39.56 -0.39 -1.49 16 19 C 0.00 0.01 6.31 -39.50 -0.25 -0.24 16 20 Cl -0.04 -0.56 27.52 -51.86 -1.43 -1.99 16 21 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 22 H 0.03 0.74 8.14 -51.92 -0.42 0.31 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.34 5.74 8.72 -39.29 -0.34 5.40 16 27 H 0.09 1.23 7.36 -51.93 -0.38 0.84 16 28 H 0.04 0.49 8.00 -51.93 -0.42 0.08 16 29 H 0.14 1.41 8.03 -52.49 -0.42 0.99 16 30 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 306.31 15.07 4.62 4.62 Total: -1.00 -29.83 306.31 -10.59 -40.41 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -3.64 Total: -1.16 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -2.81 Total: -17.02 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: -0.01 Total: -38.79 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.43 Total: -1.99 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -2.29 Total: -2.76 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.83 -10.59 -40.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273070016.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.050 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds