Wall clock time and date at job start Tue Mar 31 2020 11:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00377 * 2 1 4 4 H 1.48501 * 109.47101 * 239.99899 * 3 2 1 5 5 H 1.48504 * 109.46703 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47283 * 119.99557 * 3 2 1 7 7 C 1.37879 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99769 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00172 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47453 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47035 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99789 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47109 * 179.97438 * 12 11 10 14 14 C 1.38226 * 119.99897 * 259.72934 * 13 12 11 15 15 C 1.38312 * 119.99567 * 179.72195 * 14 13 12 16 16 Br 1.89101 * 119.99411 * 180.27108 * 15 14 13 17 17 C 1.38353 * 120.00904 * 0.55215 * 15 14 13 18 18 C 1.38171 * 119.99914 * 359.72023 * 17 15 14 19 19 C 1.38335 * 120.00230 * 80.00079 * 13 12 11 20 20 Cl 1.73595 * 119.99937 * 0.02589 * 19 13 12 21 21 H 0.96998 * 119.99843 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.47239 * 59.99718 * 9 7 2 23 23 H 1.09005 * 109.46971 * 300.00265 * 9 7 2 24 24 H 1.08996 * 109.46863 * 59.99873 * 10 9 7 25 25 H 1.09002 * 109.46661 * 300.00050 * 10 9 7 26 26 H 1.00902 * 111.00273 * 303.95364 * 11 10 9 27 27 H 1.08992 * 109.47459 * 299.99826 * 12 11 10 28 28 H 1.09004 * 109.47040 * 59.99976 * 12 11 10 29 29 H 1.07997 * 120.00075 * 359.97438 * 14 13 12 30 30 H 1.08000 * 119.99668 * 179.70357 * 17 15 14 31 31 H 1.08007 * 119.99883 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5107 -4.9342 0.0012 12 6 2.4351 -6.0759 0.0018 13 6 1.6471 -7.3605 0.0018 14 6 1.4671 -8.0609 1.1798 15 6 0.7389 -9.2368 1.1807 16 35 0.4863 -10.1910 2.7937 17 6 0.2003 -9.7181 0.0007 18 6 0.3848 -9.0209 -1.1779 19 6 1.1085 -7.8415 -1.1781 20 17 1.3410 -6.9659 -2.6589 21 1 -0.4850 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6239 -2.5566 0.8903 24 1 2.8712 -3.6040 0.8922 25 1 2.8725 -3.6047 -0.8877 26 1 0.8733 -4.9842 0.7819 27 1 3.0637 -6.0349 -0.8877 28 1 3.0625 -6.0350 0.8923 29 1 1.8916 -7.6879 2.1001 30 1 -0.3642 -10.6388 0.0008 31 1 -0.0353 -9.3969 -2.0991 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273070016.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:32 Heat of formation + Delta-G solvation = -9.485034 kcal Electronic energy + Delta-G solvation = -15616.752140 eV Core-core repulsion = 12775.770464 eV Total energy + Delta-G solvation = -2840.981676 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.988 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.63243 -37.51231 -37.39509 -35.18086 -33.42376 -32.89764 -30.87008 -30.02541 -27.13006 -25.13950 -23.65983 -22.49959 -22.14976 -18.50637 -18.12964 -17.29051 -16.68704 -16.33685 -16.02750 -15.71592 -15.04753 -14.84841 -14.57654 -14.08349 -13.96707 -13.67329 -13.05283 -13.00428 -12.87289 -12.72930 -12.44776 -12.40674 -11.91051 -11.71387 -11.51132 -11.40829 -11.33812 -11.23853 -10.54812 -10.10178 -9.58245 -9.27468 -8.19023 -6.30478 -0.16681 0.09369 0.51517 1.20133 1.40996 1.44197 1.52034 2.33335 2.42249 3.14507 3.37251 3.63004 3.67494 4.02646 4.14276 4.29111 4.40811 4.53766 4.63450 4.67057 4.79214 4.91686 5.02912 5.08757 5.20612 5.45520 5.52157 5.68948 5.78816 6.11945 6.25814 6.50193 6.86961 7.38735 8.92897 Molecular weight = 316.99amu Principal moments of inertia in cm(-1) A = 0.019400 B = 0.002969 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.939499 B = 9427.154126 C =10463.562286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.033 3.967 10 C 0.088 3.912 11 N -0.685 5.685 12 C 0.098 3.902 13 C -0.077 4.077 14 C -0.077 4.077 15 C -0.097 4.097 16 Br -0.038 7.038 17 C -0.075 4.075 18 C -0.107 4.107 19 C -0.014 4.014 20 Cl -0.059 7.059 21 H 0.263 0.737 22 H -0.007 1.007 23 H -0.009 1.009 24 H 0.023 0.977 25 H 0.058 0.942 26 H 0.338 0.662 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.147 0.853 30 H 0.166 0.834 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.916 -25.995 2.718 26.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.004 4.004 10 C -0.041 4.041 11 N -0.316 5.316 12 C -0.031 4.031 13 C -0.079 4.079 14 C -0.098 4.098 15 C -0.176 4.176 16 Br 0.047 6.953 17 C -0.095 4.095 18 C -0.126 4.126 19 C -0.041 4.041 20 Cl -0.030 7.030 21 H 0.072 0.928 22 H 0.011 0.989 23 H 0.009 0.991 24 H 0.041 0.959 25 H 0.077 0.923 26 H 0.156 0.844 27 H 0.100 0.900 28 H 0.069 0.931 29 H 0.165 0.835 30 H 0.183 0.817 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.631 -26.163 2.507 26.333 hybrid contribution 0.508 1.415 0.383 1.551 sum 2.139 -24.748 2.890 25.007 Atomic orbital electron populations 1.70101 1.07839 1.27822 1.51403 1.25966 0.95739 1.03343 0.94655 0.85494 0.78254 0.78046 0.79203 1.19216 1.20891 1.19047 1.21595 0.93567 0.92249 1.50939 0.92060 1.18896 0.94289 0.92232 0.95000 1.21758 0.95522 0.87896 0.98917 1.60474 1.19775 1.01163 1.50173 1.20881 0.93407 0.86623 1.02148 1.19721 0.99584 0.96738 0.91897 1.21114 0.97362 0.93263 0.98015 1.21956 1.04388 0.97907 0.93397 1.96751 1.96376 1.73597 1.28534 1.21351 0.97927 1.00545 0.89655 1.21334 0.98124 0.92966 1.00191 1.21147 1.00354 0.94599 0.88028 1.98404 1.95485 1.76108 1.33028 0.92782 0.98881 0.99065 0.95879 0.92349 0.84413 0.89955 0.93078 0.83537 0.81675 0.81957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.97 44.41 29.54 68.60 2.03 46.43 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.55 -31.22 9.11 25.60 0.23 -30.98 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.78 5.23 29.85 0.16 1.94 16 10 C 0.09 3.64 5.62 86.31 0.49 4.12 16 11 N -0.69 -23.82 6.49 -517.92 -3.36 -27.19 16 12 C 0.10 2.69 5.23 85.56 0.45 3.14 16 13 C -0.08 -1.87 5.40 -19.84 -0.11 -1.98 16 14 C -0.08 -1.62 9.41 22.28 0.21 -1.41 16 15 C -0.10 -1.81 6.22 22.31 0.14 -1.67 16 16 Br -0.04 -0.64 33.70 -20.37 -0.69 -1.33 16 17 C -0.07 -1.21 9.79 22.28 0.22 -1.00 16 18 C -0.11 -1.93 9.83 22.29 0.22 -1.71 16 19 C -0.01 -0.32 6.31 22.32 0.14 -0.18 16 20 Cl -0.06 -1.57 27.52 -2.72 -0.07 -1.65 16 21 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 22 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 23 H -0.01 -0.52 8.14 -2.38 -0.02 -0.53 16 24 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.34 11.61 8.72 -89.69 -0.78 10.83 16 27 H 0.08 2.31 7.36 -2.39 -0.02 2.30 16 28 H 0.05 1.27 8.00 -2.38 -0.02 1.25 16 29 H 0.15 2.76 8.03 -2.91 -0.02 2.74 16 30 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 31 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -64.12 306.31 1.15 -62.97 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 0.36 Total: 7.03 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 2.60 Total: -29.21 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -3.08 Total: -84.24 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.07 Total: -1.65 kcal Atomic # 35 Polarization: -0.64 SS G_CDS: -0.69 Total: -1.33 kcal Total: -64.12 1.15 -62.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273070016.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.482 kcal (2) G-P(sol) polarization free energy of solvation -64.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds