Wall clock time and date at job start Tue Mar 31 2020 12:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.53001 * 109.47059 * 240.00407 * 2 1 3 5 5 C 1.50700 * 109.47341 * 175.00018 * 4 2 1 6 6 H 1.08000 * 119.99724 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00362 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00072 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99675 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47270 * 89.99907 * 9 7 5 11 11 H 1.48505 * 109.46856 * 209.99631 * 9 7 5 12 12 H 1.48494 * 109.47064 * 329.99782 * 9 7 5 13 13 N 1.46902 * 109.47449 * 120.00521 * 2 1 3 14 14 C 1.46898 * 111.00283 * 58.95014 * 13 2 1 15 15 C 1.46906 * 110.99573 * 294.99873 * 13 2 1 16 16 C 1.50706 * 109.46929 * 190.00042 * 15 13 2 17 17 C 1.33356 * 122.53369 * 90.02503 * 16 15 13 18 18 S 1.75881 * 109.61310 * 180.02562 * 17 16 15 19 19 C 1.75885 * 90.97519 * 0.02562 * 18 17 16 20 20 Br 1.89105 * 125.20365 * 180.02562 * 19 18 17 21 21 C 1.33473 * 109.58664 * 359.73094 * 19 18 17 22 22 H 1.08995 * 109.47107 * 299.99473 * 1 2 3 23 23 H 1.08999 * 109.47381 * 60.00003 * 1 2 3 24 24 H 1.09005 * 109.47033 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47042 * 294.99790 * 4 2 1 26 26 H 1.09001 * 109.47470 * 54.99716 * 4 2 1 27 27 H 0.96996 * 119.99793 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.47334 * 296.05250 * 14 13 2 29 29 H 1.09000 * 109.46674 * 56.05127 * 14 13 2 30 30 H 1.08995 * 109.47296 * 176.04950 * 14 13 2 31 31 H 1.08998 * 109.47121 * 309.99709 * 15 13 2 32 32 H 1.09000 * 109.47141 * 69.99907 * 15 13 2 33 33 H 1.08005 * 125.19680 * 0.03832 * 17 16 15 34 34 H 1.07998 * 122.55644 * 180.24148 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0789 -0.0855 -0.5397 7 6 4.2304 -1.1934 -2.3579 8 7 5.5411 -1.1002 -2.4136 9 14 3.3016 -2.1097 -3.6948 10 1 2.9398 -1.1654 -4.7823 11 1 4.1605 -3.1901 -4.2427 12 1 2.0661 -2.7019 -3.1221 13 7 2.0197 -0.6926 1.1994 14 6 1.5284 -2.0762 1.2459 15 6 1.6488 0.0391 2.4181 16 6 2.3681 -0.5573 3.6005 17 6 3.5676 -0.1324 3.9992 18 16 4.0862 -1.0591 5.4012 19 6 2.6009 -2.0005 5.3659 20 35 2.1580 -3.3838 6.5769 21 6 1.8316 -1.5848 4.3576 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7516 -1.7714 -1.2057 26 1 1.6053 -0.2617 -2.1370 27 1 6.0255 -1.5075 -3.1486 28 1 0.4420 -2.0732 1.3347 29 1 1.8168 -2.5950 0.3317 30 1 1.9618 -2.5869 2.1057 31 1 1.9298 1.0869 2.3125 32 1 0.5723 -0.0346 2.5726 33 1 4.1340 0.6601 3.5326 34 1 0.8657 -2.0193 4.1462 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276311830.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:11 Heat of formation + Delta-G solvation = 41.545049 kcal Electronic energy + Delta-G solvation = -16744.330710 eV Core-core repulsion = 14043.438665 eV Total energy + Delta-G solvation = -2700.892045 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.02949 -37.02660 -32.92181 -32.09741 -30.79304 -28.87340 -27.94447 -26.74176 -24.94304 -22.85079 -21.57545 -18.93553 -18.80653 -17.40991 -16.58947 -15.77197 -15.40797 -14.36633 -14.14177 -13.79204 -13.36577 -13.07686 -13.07167 -12.64458 -12.39389 -12.20216 -12.11063 -11.68590 -11.51760 -11.03667 -10.98776 -10.89248 -10.77580 -10.64343 -10.38902 -10.24982 -9.65926 -9.54734 -9.04879 -8.66147 -8.43971 -8.38504 -7.55255 -5.91821 -3.86005 0.81823 1.05289 1.73238 1.93373 2.59821 3.34475 3.42785 3.44489 4.53285 4.63157 5.06474 5.17591 5.30166 5.42337 5.57976 5.59104 5.66651 5.80088 5.80784 5.88423 5.97336 6.05026 6.29978 6.33387 6.46911 6.50583 6.59973 6.75849 7.09472 7.32828 7.74143 7.78233 7.94122 8.70823 9.20764 9.71208 11.22218 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.020646 B = 0.003563 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.867699 B = 7857.451463 C = 8026.354470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.096 3.904 3 H 0.076 0.924 4 C -0.009 4.009 5 C -0.492 4.492 6 H 0.079 0.921 7 C 0.062 3.938 8 N -0.907 5.907 9 Si 0.872 3.128 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.506 5.506 14 C 0.023 3.977 15 C 0.110 3.890 16 C -0.093 4.093 17 C -0.167 4.167 18 S 0.139 5.861 19 C -0.213 4.213 20 Br -0.003 7.003 21 C -0.076 4.076 22 H 0.044 0.956 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.019 0.981 26 H 0.014 0.986 27 H 0.260 0.740 28 H 0.016 0.984 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.038 0.962 33 H 0.174 0.826 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.068 -1.340 19.073 21.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.012 4.012 3 H 0.094 0.906 4 C -0.046 4.046 5 C -0.530 4.530 6 H 0.097 0.903 7 C -0.137 4.137 8 N -0.547 5.547 9 Si 0.700 3.300 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.194 1.194 13 N -0.229 5.229 14 C -0.125 4.125 15 C -0.020 4.020 16 C -0.105 4.105 17 C -0.305 4.305 18 S 0.402 5.598 19 C -0.409 4.409 20 Br 0.080 6.920 21 C -0.110 4.110 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.037 0.963 26 H 0.032 0.968 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.191 0.809 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.249 -1.919 20.327 21.666 hybrid contribution -2.357 -0.328 -1.976 3.093 sum -9.606 -2.247 18.351 20.834 Atomic orbital electron populations 1.22575 0.99689 1.01437 1.01059 1.21721 0.89885 0.98592 0.91023 0.90554 1.19730 0.98024 0.95421 0.91452 1.21045 0.89359 1.33921 1.08654 0.90304 1.25005 0.94655 0.96262 0.97804 1.69907 1.06429 1.46111 1.32289 0.86918 0.80202 0.80098 0.82801 1.20571 1.21609 1.19352 1.62104 1.58997 1.01668 1.00139 1.22439 0.96132 0.90797 1.03113 1.20775 0.95761 0.97823 0.87635 1.18763 0.95665 0.97690 0.98404 1.25722 0.99455 1.05398 0.99887 1.84251 1.17325 1.29183 1.29031 1.25887 1.03498 1.06233 1.05245 1.96661 1.92985 1.44901 1.57409 1.20117 1.00792 0.96733 0.93374 0.93679 0.92451 0.92843 0.96318 0.96806 0.93062 0.96607 0.90196 0.92361 0.90048 0.94378 0.80876 0.83925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.90 8.50 37.16 0.32 -2.58 16 2 C 0.10 1.80 2.29 -67.71 -0.16 1.65 16 3 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 4 C -0.01 -0.21 3.34 -27.88 -0.09 -0.30 16 5 C -0.49 -13.69 9.39 -34.44 -0.32 -14.02 16 6 H 0.08 2.41 7.99 -52.49 -0.42 1.99 16 7 C 0.06 1.81 5.47 -17.82 -0.10 1.71 16 8 N -0.91 -28.11 13.96 55.43 0.77 -27.34 16 9 Si 0.87 21.72 27.47 -169.99 -4.67 17.05 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 13 N -0.51 -9.12 4.46 -236.33 -1.05 -10.17 16 14 C 0.02 0.40 8.42 60.06 0.51 0.90 16 15 C 0.11 1.59 4.66 -4.97 -0.02 1.57 16 16 C -0.09 -1.28 4.74 -106.25 -0.50 -1.79 16 17 C -0.17 -2.24 10.97 29.03 0.32 -1.92 16 18 S 0.14 1.70 23.34 -107.50 -2.51 -0.81 16 19 C -0.21 -2.68 6.97 29.07 0.20 -2.48 16 20 Br 0.00 -0.03 34.07 -68.01 -2.32 -2.35 16 21 C -0.08 -0.98 8.34 -41.17 -0.34 -1.32 16 22 H 0.04 0.60 6.75 -51.93 -0.35 0.25 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.05 0.81 6.48 -51.93 -0.34 0.48 16 25 H 0.02 0.44 5.15 -51.93 -0.27 0.17 16 26 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.02 0.24 6.51 -51.93 -0.34 -0.10 16 29 H 0.08 1.56 6.03 -51.93 -0.31 1.24 16 30 H 0.06 0.95 6.23 -51.93 -0.32 0.63 16 31 H 0.08 1.12 7.98 -51.93 -0.41 0.71 16 32 H 0.04 0.50 6.92 -51.93 -0.36 0.14 16 33 H 0.17 2.18 8.06 -52.48 -0.42 1.75 16 34 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 305.35 15.07 4.60 4.60 Total: -1.00 -30.02 305.35 -9.74 -39.76 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -4.37 Total: -2.17 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -0.20 Total: -18.57 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.28 Total: -37.51 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.51 Total: -0.81 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -2.32 Total: -2.35 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.02 -9.74 -39.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276311830.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.302 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds