Wall clock time and date at job start Tue Mar 31 2020 12:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.53001 * 109.47059 * 240.00407 * 2 1 3 5 5 C 1.50700 * 109.47341 * 175.00018 * 4 2 1 6 6 H 1.08000 * 119.99724 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00362 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00072 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99675 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47270 * 89.99907 * 9 7 5 11 11 H 1.48505 * 109.46856 * 209.99631 * 9 7 5 12 12 H 1.48494 * 109.47064 * 329.99782 * 9 7 5 13 13 N 1.46902 * 109.47449 * 120.00521 * 2 1 3 14 14 C 1.46898 * 111.00283 * 58.95014 * 13 2 1 15 15 C 1.46906 * 110.99573 * 294.99873 * 13 2 1 16 16 C 1.50706 * 109.46929 * 190.00042 * 15 13 2 17 17 C 1.33356 * 122.53369 * 90.02503 * 16 15 13 18 18 S 1.75881 * 109.61310 * 180.02562 * 17 16 15 19 19 C 1.75885 * 90.97519 * 0.02562 * 18 17 16 20 20 Br 1.89105 * 125.20365 * 180.02562 * 19 18 17 21 21 C 1.33473 * 109.58664 * 359.73094 * 19 18 17 22 22 H 1.08995 * 109.47107 * 299.99473 * 1 2 3 23 23 H 1.08999 * 109.47381 * 60.00003 * 1 2 3 24 24 H 1.09005 * 109.47033 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47042 * 294.99790 * 4 2 1 26 26 H 1.09001 * 109.47470 * 54.99716 * 4 2 1 27 27 H 0.96996 * 119.99793 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.47334 * 296.05250 * 14 13 2 29 29 H 1.09000 * 109.46674 * 56.05127 * 14 13 2 30 30 H 1.08995 * 109.47296 * 176.04950 * 14 13 2 31 31 H 1.08998 * 109.47121 * 309.99709 * 15 13 2 32 32 H 1.09000 * 109.47141 * 69.99907 * 15 13 2 33 33 H 1.08005 * 125.19680 * 0.03832 * 17 16 15 34 34 H 1.07998 * 122.55644 * 180.24148 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0789 -0.0855 -0.5397 7 6 4.2304 -1.1934 -2.3579 8 7 5.5411 -1.1002 -2.4136 9 14 3.3016 -2.1097 -3.6948 10 1 2.9398 -1.1654 -4.7823 11 1 4.1605 -3.1901 -4.2427 12 1 2.0661 -2.7019 -3.1221 13 7 2.0197 -0.6926 1.1994 14 6 1.5284 -2.0762 1.2459 15 6 1.6488 0.0391 2.4181 16 6 2.3681 -0.5573 3.6005 17 6 3.5676 -0.1324 3.9992 18 16 4.0862 -1.0591 5.4012 19 6 2.6009 -2.0005 5.3659 20 35 2.1580 -3.3838 6.5769 21 6 1.8316 -1.5848 4.3576 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7516 -1.7714 -1.2057 26 1 1.6053 -0.2617 -2.1370 27 1 6.0255 -1.5075 -3.1486 28 1 0.4420 -2.0732 1.3347 29 1 1.8168 -2.5950 0.3317 30 1 1.9618 -2.5869 2.1057 31 1 1.9298 1.0869 2.3125 32 1 0.5723 -0.0346 2.5726 33 1 4.1340 0.6601 3.5326 34 1 0.8657 -2.0193 4.1462 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276311830.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:10 Heat of formation + Delta-G solvation = 23.585757 kcal Electronic energy + Delta-G solvation = -16745.109484 eV Core-core repulsion = 14043.438665 eV Total energy + Delta-G solvation = -2701.670818 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.21128 -38.28280 -34.86013 -33.33393 -32.24850 -29.94627 -29.62263 -27.95476 -26.21705 -24.54627 -22.88768 -20.32620 -19.95687 -18.75217 -18.42592 -17.12624 -16.61430 -16.18192 -15.42305 -15.15201 -14.70721 -14.38778 -14.21087 -14.08293 -13.93774 -13.58372 -13.32526 -13.18695 -12.89095 -12.56021 -12.41396 -12.17015 -12.04100 -11.84249 -11.78996 -11.56564 -11.31341 -11.29497 -11.05287 -10.64914 -9.65162 -9.41505 -8.84395 -8.15174 -6.13500 -0.19277 0.08764 0.75916 0.92132 1.37775 1.39852 1.50003 1.55404 2.43557 3.17437 3.38429 3.99787 4.12709 4.20304 4.27323 4.39788 4.50887 4.54825 4.64449 4.70637 4.80310 4.82966 4.98586 5.12389 5.17277 5.25393 5.27332 5.30428 5.44277 5.61503 5.78297 6.38556 6.42147 6.56738 6.95210 7.47198 9.02280 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.020646 B = 0.003563 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.867699 B = 7857.451463 C = 8026.354470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.099 3.901 3 H 0.065 0.935 4 C -0.008 4.008 5 C -0.487 4.487 6 H 0.037 0.963 7 C -0.002 4.002 8 N -0.959 5.959 9 Si 0.940 3.060 10 H -0.270 1.270 11 H -0.292 1.292 12 H -0.249 1.249 13 N -0.536 5.536 14 C 0.030 3.970 15 C 0.115 3.885 16 C -0.102 4.102 17 C -0.183 4.183 18 S 0.156 5.844 19 C -0.222 4.222 20 Br 0.012 6.988 21 C -0.079 4.079 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.020 0.980 26 H 0.019 0.981 27 H 0.260 0.740 28 H 0.041 0.959 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.174 0.826 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.472 -1.904 19.556 22.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.009 4.009 3 H 0.083 0.917 4 C -0.045 4.045 5 C -0.526 4.526 6 H 0.055 0.945 7 C -0.197 4.197 8 N -0.602 5.602 9 Si 0.765 3.235 10 H -0.195 1.195 11 H -0.219 1.219 12 H -0.172 1.172 13 N -0.259 5.259 14 C -0.118 4.118 15 C -0.014 4.014 16 C -0.115 4.115 17 C -0.321 4.321 18 S 0.420 5.580 19 C -0.418 4.418 20 Br 0.096 6.904 21 C -0.114 4.114 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.039 0.961 26 H 0.037 0.963 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.191 0.809 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.679 -2.475 20.831 23.102 hybrid contribution -1.531 -0.119 -2.003 2.523 sum -11.209 -2.594 18.828 22.065 Atomic orbital electron populations 1.22431 0.96374 1.02182 1.02641 1.21508 0.92428 0.97253 0.89720 0.91704 1.19690 0.94590 0.96167 0.94066 1.21308 0.92012 1.32253 1.06984 0.94498 1.25914 0.95430 0.97637 1.00714 1.70081 1.08464 1.48071 1.33543 0.85811 0.79305 0.78719 0.79653 1.19492 1.21853 1.17244 1.61974 1.60407 1.02382 1.01168 1.22331 0.97656 0.90113 1.01707 1.20762 0.97000 0.97438 0.86220 1.18814 0.95869 0.98269 0.98503 1.25893 0.99718 1.05830 1.00623 1.84170 1.17128 1.28635 1.28108 1.26095 1.03521 1.06607 1.05551 1.96674 1.92869 1.44102 1.56770 1.20203 1.01378 0.96508 0.93267 0.91294 0.91758 0.92415 0.96136 0.96278 0.93170 0.94087 0.93084 0.92022 0.89934 0.92298 0.80880 0.82646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.87 8.50 71.98 0.61 -4.25 16 2 C 0.10 3.60 2.29 44.91 0.10 3.70 16 3 H 0.06 2.47 8.03 -2.38 -0.02 2.45 16 4 C -0.01 -0.35 3.34 29.85 0.10 -0.25 16 5 C -0.49 -27.68 9.39 25.60 0.24 -27.44 16 6 H 0.04 2.35 7.99 -2.91 -0.02 2.32 16 7 C 0.00 -0.13 5.47 84.66 0.46 0.33 16 8 N -0.96 -61.20 13.96 21.45 0.30 -60.90 16 9 Si 0.94 44.76 27.47 68.60 1.88 46.64 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 12 H -0.25 -10.94 6.54 99.48 0.65 -10.28 16 13 N -0.54 -18.76 4.46 -901.60 -4.02 -22.78 16 14 C 0.03 0.97 8.42 127.69 1.07 2.05 16 15 C 0.12 3.14 4.66 85.56 0.40 3.54 16 16 C -0.10 -2.69 4.74 -20.92 -0.10 -2.79 16 17 C -0.18 -4.82 10.97 66.72 0.73 -4.09 16 18 S 0.16 3.68 23.34 -56.49 -1.32 2.36 16 19 C -0.22 -5.25 6.97 66.74 0.47 -4.78 16 20 Br 0.01 0.25 34.07 -20.37 -0.69 -0.44 16 21 C -0.08 -1.90 8.34 21.24 0.18 -1.73 16 22 H 0.07 1.57 6.75 -2.39 -0.02 1.56 16 23 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.06 1.54 6.48 -2.38 -0.02 1.53 16 25 H 0.02 0.93 5.15 -2.39 -0.01 0.92 16 26 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 27 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 28 H 0.04 1.11 6.51 -2.39 -0.02 1.09 16 29 H 0.05 1.94 6.03 -2.39 -0.01 1.92 16 30 H 0.06 1.93 6.23 -2.39 -0.01 1.92 16 31 H 0.08 2.19 7.98 -2.39 -0.02 2.17 16 32 H 0.06 1.36 6.92 -2.39 -0.02 1.34 16 33 H 0.17 4.43 8.06 -2.91 -0.02 4.40 16 34 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -65.22 305.35 1.46 -63.76 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 1.04 Total: 7.07 kcal Atomic # 6 Polarization: -39.97 SS G_CDS: 4.27 Total: -35.71 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -3.72 Total: -83.68 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.88 Total: 46.64 kcal Atomic # 16 Polarization: 3.68 SS G_CDS: -1.32 Total: 2.36 kcal Atomic # 35 Polarization: 0.25 SS G_CDS: -0.69 Total: -0.44 kcal Total: -65.22 1.46 -63.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276311830.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.347 kcal (2) G-P(sol) polarization free energy of solvation -65.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds