Wall clock time and date at job start Tue Mar 31 2020 11:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00291 * 2 1 4 4 H 1.48497 * 109.47371 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46838 * 299.99997 * 3 2 1 6 6 H 1.48505 * 109.46977 * 59.99309 * 3 2 1 7 7 C 1.37878 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00179 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99714 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46807 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46916 * 179.97438 * 10 9 7 12 12 C 1.46905 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47066 * 180.02562 * 12 11 10 14 14 C 1.38260 * 119.98549 * 269.72444 * 13 12 11 15 15 C 1.38214 * 120.03575 * 179.76702 * 14 13 12 16 16 C 1.38320 * 120.00143 * 0.51057 * 15 14 13 17 17 Br 1.89099 * 120.01495 * 179.72180 * 16 15 14 18 18 C 1.38417 * 119.96706 * 359.74499 * 16 15 14 19 19 Cl 1.73596 * 120.01567 * 180.02562 * 18 16 15 20 20 C 1.38211 * 119.98237 * 90.00140 * 13 12 11 21 21 H 0.97007 * 120.00038 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47327 * 60.00338 * 9 7 2 23 23 H 1.08996 * 109.47062 * 299.99195 * 9 7 2 24 24 H 1.09004 * 109.46889 * 60.00274 * 10 9 7 25 25 H 1.08995 * 109.47384 * 299.99914 * 10 9 7 26 26 H 1.00901 * 111.00067 * 303.95263 * 11 10 9 27 27 H 1.09001 * 109.46798 * 300.00327 * 12 11 10 28 28 H 1.08998 * 109.46961 * 60.00043 * 12 11 10 29 29 H 1.07998 * 119.98129 * 0.02562 * 14 13 12 30 30 H 1.07997 * 119.99614 * 180.23170 * 15 14 13 31 31 H 1.07995 * 120.00023 * 359.95236 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 2.4351 -6.0760 0.0018 13 6 1.6470 -7.3604 0.0018 14 6 1.2901 -7.9522 1.1993 15 6 0.5632 -9.1277 1.2005 16 6 0.2014 -9.7184 0.0033 17 35 -0.7864 -11.3309 0.0045 18 6 0.5632 -9.1289 -1.1957 19 17 0.1093 -9.8689 -2.6990 20 6 1.2863 -7.9494 -1.1954 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8718 -3.6043 0.8906 25 1 2.8718 -3.6044 -0.8894 26 1 0.8744 -4.9841 0.7828 27 1 3.0631 -6.0353 -0.8882 28 1 3.0630 -6.0345 0.8918 29 1 1.5759 -7.4933 2.1343 30 1 0.2815 -9.5873 2.1363 31 1 1.5686 -7.4888 -2.1305 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276953607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:55 Heat of formation + Delta-G solvation = -10.932936 kcal Electronic energy + Delta-G solvation = -15389.175500 eV Core-core repulsion = 12548.131038 eV Total energy + Delta-G solvation = -2841.044462 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.988 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.61681 -37.84784 -37.25107 -35.18620 -33.67999 -31.94077 -31.74980 -30.02371 -26.88251 -24.96976 -24.00271 -22.48499 -22.15885 -18.51150 -17.98241 -17.24336 -16.63450 -16.43653 -16.19526 -15.66221 -15.05259 -14.83190 -14.79979 -14.17494 -13.95933 -13.64639 -13.03840 -12.87706 -12.68151 -12.63454 -12.47073 -12.39158 -12.01350 -11.92740 -11.85824 -11.39042 -11.23994 -11.16590 -10.56059 -9.96090 -9.73058 -9.27127 -8.19381 -6.30617 -0.17900 0.08753 0.41497 1.03845 1.41645 1.42209 1.55206 2.34095 2.42642 3.14557 3.44149 3.59196 3.76160 4.06170 4.10529 4.23053 4.46882 4.53085 4.64447 4.72548 4.78116 4.90313 5.01236 5.09394 5.39147 5.46268 5.58292 5.68862 5.79248 6.12227 6.26118 6.50998 6.87625 7.38950 8.92869 Molecular weight = 316.99amu Principal moments of inertia in cm(-1) A = 0.033906 B = 0.002408 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.619221 B =11622.932242 C =11810.479076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.030 3.970 10 C 0.085 3.915 11 N -0.694 5.694 12 C 0.096 3.904 13 C -0.053 4.053 14 C -0.101 4.101 15 C -0.077 4.077 16 C -0.101 4.101 17 Br -0.031 7.031 18 C -0.025 4.025 19 Cl -0.053 7.053 20 C -0.093 4.093 21 H 0.263 0.737 22 H -0.008 1.008 23 H -0.008 1.008 24 H 0.026 0.974 25 H 0.061 0.939 26 H 0.341 0.659 27 H 0.085 0.915 28 H 0.058 0.942 29 H 0.158 0.842 30 H 0.164 0.836 31 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.779 -25.931 1.818 26.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.184 1.184 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.081 0.919 9 C -0.008 4.008 10 C -0.044 4.044 11 N -0.326 5.326 12 C -0.032 4.032 13 C -0.054 4.054 14 C -0.120 4.120 15 C -0.097 4.097 16 C -0.182 4.182 17 Br 0.055 6.945 18 C -0.054 4.054 19 Cl -0.024 7.024 20 C -0.113 4.113 21 H 0.072 0.928 22 H 0.011 0.989 23 H 0.010 0.990 24 H 0.044 0.956 25 H 0.080 0.920 26 H 0.158 0.842 27 H 0.104 0.896 28 H 0.076 0.924 29 H 0.176 0.824 30 H 0.181 0.819 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.157 -26.506 0.988 26.550 hybrid contribution 0.448 1.304 0.538 1.481 sum 1.605 -25.202 1.527 25.299 Atomic orbital electron populations 1.70116 1.07843 1.27695 1.51586 1.25975 0.95742 1.03397 0.94736 0.85387 0.79136 0.78732 0.77703 1.18404 1.20559 1.20410 1.21658 0.93620 0.92196 1.50611 0.91940 1.18934 0.94388 0.92373 0.95060 1.21796 0.95532 0.87812 0.99261 1.60534 1.20127 1.01443 1.50453 1.20956 0.93258 0.86315 1.02677 1.19979 0.97155 0.95573 0.92742 1.21474 0.96937 0.94814 0.98773 1.21345 0.96350 0.95184 0.96788 1.21946 1.04604 0.96674 0.94938 1.96734 1.71377 1.27172 1.99261 1.20865 1.01582 0.96128 0.86847 1.98384 1.91118 1.81767 1.31156 1.21066 0.97286 0.92985 0.99914 0.92802 0.98923 0.98966 0.95566 0.92042 0.84155 0.89649 0.92435 0.82436 0.81859 0.83889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.58 13.29 21.45 0.28 -56.29 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.97 43.71 29.54 68.60 2.03 45.73 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.54 -30.36 9.11 25.60 0.23 -30.13 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.56 5.23 29.85 0.16 1.71 16 10 C 0.08 3.32 5.62 86.30 0.49 3.81 16 11 N -0.69 -22.45 6.49 -517.92 -3.36 -25.81 16 12 C 0.10 2.30 5.81 85.55 0.50 2.79 16 13 C -0.05 -1.15 5.39 -19.87 -0.11 -1.26 16 14 C -0.10 -1.79 9.70 22.27 0.22 -1.58 16 15 C -0.08 -1.33 9.79 22.28 0.22 -1.11 16 16 C -0.10 -2.07 6.23 22.33 0.14 -1.93 16 17 Br -0.03 -0.58 32.53 -20.37 -0.66 -1.24 16 18 C -0.03 -0.57 6.32 22.34 0.14 -0.43 16 19 Cl -0.05 -1.17 27.74 -2.72 -0.08 -1.25 16 20 C -0.09 -2.10 9.48 22.29 0.21 -1.89 16 21 H 0.26 14.97 8.31 -92.70 -0.77 14.19 16 22 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 23 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 24 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.34 10.74 8.72 -89.69 -0.78 9.96 16 27 H 0.09 1.99 8.08 -2.39 -0.02 1.97 16 28 H 0.06 1.21 8.08 -2.39 -0.02 1.19 16 29 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 30 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 31 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -63.13 306.74 1.22 -61.91 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 0.36 Total: 6.55 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 2.65 Total: -29.59 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -3.08 Total: -82.11 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.25 kcal Atomic # 35 Polarization: -0.58 SS G_CDS: -0.66 Total: -1.24 kcal Total: -63.13 1.22 -61.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276953607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.974 kcal (2) G-P(sol) polarization free energy of solvation -63.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds