Wall clock time and date at job start Tue Mar 31 2020 11:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33777 * 122.44796 * 2 1 4 4 S 1.70616 * 110.98767 * 179.97438 * 3 2 1 5 5 C 1.75833 * 91.57908 * 0.02562 * 4 3 2 6 6 C 1.46473 * 125.45893 * 180.02562 * 5 4 3 7 7 O 1.21723 * 119.99895 * 170.41001 * 6 5 4 8 8 N 1.34774 * 120.00393 * 350.42068 * 6 5 4 9 9 C 1.46504 * 119.99884 * 0.33126 * 8 6 5 10 10 C 1.46497 * 120.00242 * 180.33732 * 8 6 5 11 11 C 1.50704 * 109.47179 * 89.99631 * 10 8 6 12 12 H 1.08001 * 120.00013 * 0.02562 * 11 10 8 13 13 C 1.37881 * 119.99894 * 179.97438 * 11 10 8 14 14 N 1.31515 * 119.99885 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99912 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47144 * 60.00089 * 15 13 11 17 17 H 1.48496 * 109.46884 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46726 * 300.00171 * 15 13 11 19 19 C 1.36761 * 109.07681 * 0.02562 * 5 4 3 20 20 Br 1.89098 * 123.36939 * 180.02562 * 19 5 4 21 21 H 1.09006 * 109.46772 * 270.01534 * 1 2 3 22 22 H 1.08997 * 109.47275 * 30.01367 * 1 2 3 23 23 H 1.08994 * 109.47046 * 150.02170 * 1 2 3 24 24 H 1.07996 * 124.50868 * 0.02562 * 3 2 1 25 25 H 1.09000 * 109.46913 * 83.48987 * 9 8 6 26 26 H 1.08998 * 109.47338 * 203.48930 * 9 8 6 27 27 H 1.08997 * 109.47081 * 323.49368 * 9 8 6 28 28 H 1.09002 * 109.47035 * 209.99501 * 10 8 6 29 29 H 1.08995 * 109.47093 * 329.99470 * 10 8 6 30 30 H 0.96997 * 119.99862 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2248 1.1289 0.0000 4 16 3.8970 0.7899 0.0007 5 6 3.5952 -0.9423 0.0002 6 6 4.6248 -1.9842 0.0010 7 8 4.3130 -3.1477 0.1762 8 7 5.9172 -1.6546 -0.1920 9 6 6.2934 -0.2533 -0.3954 10 6 6.9461 -2.6975 -0.1985 11 6 7.1297 -3.2132 -1.6026 12 1 6.5394 -2.8046 -2.4095 13 6 8.0521 -4.2058 -1.8573 14 7 8.7713 -4.7030 -0.8749 15 14 8.2803 -4.8445 -3.5979 16 1 8.7001 -3.7289 -4.4834 17 1 9.3231 -5.9017 -3.6044 18 1 6.9985 -5.4110 -4.0892 19 6 2.2452 -1.1609 -0.0010 20 35 1.4708 -2.8860 -0.0012 21 1 -0.3633 0.0003 1.0277 22 1 -0.3634 0.8898 -0.5140 23 1 -0.3633 -0.8901 -0.5135 24 1 1.8021 2.1227 0.0004 25 1 6.3963 0.2392 0.5715 26 1 7.2419 -0.2057 -0.9303 27 1 5.5217 0.2490 -0.9786 28 1 7.8871 -2.2818 0.1619 29 1 6.6377 -3.5161 0.4517 30 1 9.4199 -5.4016 -1.0540 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277209520.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:19 Heat of formation + Delta-G solvation = 8.786457 kcal Electronic energy + Delta-G solvation = -16488.749813 eV Core-core repulsion = 13650.604154 eV Total energy + Delta-G solvation = -2838.145659 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.26762 -37.94352 -34.90958 -32.70720 -31.44701 -30.29660 -28.37405 -27.12327 -26.12939 -24.20234 -22.22450 -19.46382 -18.70124 -17.48500 -16.55882 -15.82782 -15.50952 -14.92587 -14.67680 -14.01601 -13.84518 -13.32906 -12.92034 -12.67937 -12.53772 -12.26121 -12.11267 -12.01687 -11.94370 -11.26783 -10.97281 -10.67847 -10.59326 -10.35875 -10.20384 -9.93783 -9.69117 -8.86598 -8.63618 -8.44752 -8.28990 -7.70098 -6.05968 -4.11006 0.54476 1.21514 1.87847 2.25973 2.33484 3.32035 3.36637 3.39709 3.66839 3.85407 4.43866 4.78646 4.95922 5.12720 5.28780 5.32694 5.38352 5.53166 5.62108 5.67712 5.75329 6.03274 6.15485 6.21333 6.96777 7.37333 7.44127 7.89593 8.18840 8.24611 8.82757 8.97696 9.54047 11.02075 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.019027 B = 0.005283 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.228901 B = 5298.950963 C = 6237.465118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.095 4.095 3 C -0.278 4.278 4 S 0.258 5.742 5 C -0.219 4.219 6 C 0.565 3.435 7 O -0.501 6.501 8 N -0.593 5.593 9 C 0.068 3.932 10 C 0.248 3.752 11 C -0.529 4.529 12 H 0.057 0.943 13 C 0.063 3.937 14 N -0.894 5.894 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.051 4.051 20 Br 0.001 6.999 21 H 0.072 0.928 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.166 0.834 25 H 0.056 0.944 26 H 0.095 0.905 27 H 0.061 0.939 28 H 0.036 0.964 29 H 0.048 0.952 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.134 13.540 2.706 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.108 4.108 3 C -0.415 4.415 4 S 0.527 5.473 5 C -0.342 4.342 6 C 0.350 3.650 7 O -0.377 6.377 8 N -0.325 5.325 9 C -0.078 4.078 10 C 0.130 3.870 11 C -0.568 4.568 12 H 0.076 0.924 13 C -0.139 4.139 14 N -0.533 5.533 15 Si 0.726 3.274 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.146 4.146 20 Br 0.086 6.914 21 H 0.090 0.910 22 H 0.086 0.914 23 H 0.091 0.909 24 H 0.184 0.816 25 H 0.074 0.926 26 H 0.114 0.886 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.122 13.056 2.855 18.729 hybrid contribution -0.984 -0.604 -1.038 1.553 sum -14.106 12.452 1.817 18.903 Atomic orbital electron populations 1.20611 0.89394 1.03112 1.02637 1.18413 0.97802 0.90258 1.04356 1.25605 1.02495 1.02617 1.10805 1.83653 1.00562 0.97014 1.66108 1.25001 0.97341 0.98392 1.13511 1.16823 0.81788 0.87041 0.79392 1.90897 1.80182 1.17914 1.48739 1.48068 1.07097 1.08261 1.69082 1.21878 1.01993 0.83055 1.00893 1.19376 0.84235 0.85376 0.98061 1.21377 1.21077 1.20713 0.93607 0.92427 1.24914 0.95540 0.96003 0.97449 1.69917 1.24206 1.27740 1.31411 0.86554 0.77916 0.78566 0.84392 1.20229 1.21136 1.20113 1.21127 0.92868 0.93491 1.07096 1.96703 1.80672 1.16963 1.97107 0.90970 0.91382 0.90892 0.81646 0.92615 0.88624 0.92162 0.94594 0.93366 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 9.81 36.01 0.35 -0.65 16 2 C -0.09 -1.25 5.78 -106.43 -0.62 -1.86 16 3 C -0.28 -3.14 10.67 29.17 0.31 -2.83 16 4 S 0.26 3.17 17.91 -107.50 -1.93 1.25 16 5 C -0.22 -3.85 6.22 -36.80 -0.23 -4.07 16 6 C 0.57 12.39 7.62 -12.95 -0.10 12.29 16 7 O -0.50 -12.77 14.37 5.17 0.07 -12.69 16 8 N -0.59 -12.73 2.86 -184.59 -0.53 -13.26 16 9 C 0.07 1.07 8.92 59.85 0.53 1.60 16 10 C 0.25 6.42 5.13 -5.19 -0.03 6.40 16 11 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 12 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 13 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 14 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 15 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C -0.05 -0.83 6.28 -40.36 -0.25 -1.09 16 20 Br 0.00 0.01 30.46 -68.01 -2.07 -2.06 16 21 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 23 H 0.07 0.77 7.19 -51.93 -0.37 0.40 16 24 H 0.17 1.36 8.06 -52.49 -0.42 0.93 16 25 H 0.06 0.73 7.76 -51.93 -0.40 0.33 16 26 H 0.10 1.48 8.02 -51.93 -0.42 1.06 16 27 H 0.06 0.85 4.64 -23.49 -0.11 0.74 16 28 H 0.04 0.92 8.07 -51.93 -0.42 0.51 16 29 H 0.05 1.40 7.41 -51.93 -0.39 1.02 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 288.56 15.07 4.35 4.35 Total: -1.00 -32.50 288.56 -7.75 -40.25 By element: Atomic # 1 Polarization: -2.37 SS G_CDS: -2.92 Total: -5.29 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -0.45 Total: -3.75 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.21 Total: -38.87 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.07 Total: -12.69 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.93 Total: 1.25 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -2.07 Total: -2.06 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.50 -7.75 -40.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277209520.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.038 kcal (2) G-P(sol) polarization free energy of solvation -32.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds