Wall clock time and date at job start Tue Mar 31 2020 11:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33777 * 122.44796 * 2 1 4 4 S 1.70616 * 110.98767 * 179.97438 * 3 2 1 5 5 C 1.75833 * 91.57908 * 0.02562 * 4 3 2 6 6 C 1.46473 * 125.45893 * 180.02562 * 5 4 3 7 7 O 1.21723 * 119.99895 * 170.41001 * 6 5 4 8 8 N 1.34774 * 120.00393 * 350.42068 * 6 5 4 9 9 C 1.46504 * 119.99884 * 0.33126 * 8 6 5 10 10 C 1.46497 * 120.00242 * 180.33732 * 8 6 5 11 11 C 1.50704 * 109.47179 * 89.99631 * 10 8 6 12 12 H 1.08001 * 120.00013 * 0.02562 * 11 10 8 13 13 C 1.37881 * 119.99894 * 179.97438 * 11 10 8 14 14 N 1.31515 * 119.99885 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99912 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47144 * 60.00089 * 15 13 11 17 17 H 1.48496 * 109.46884 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46726 * 300.00171 * 15 13 11 19 19 C 1.36761 * 109.07681 * 0.02562 * 5 4 3 20 20 Br 1.89098 * 123.36939 * 180.02562 * 19 5 4 21 21 H 1.09006 * 109.46772 * 270.01534 * 1 2 3 22 22 H 1.08997 * 109.47275 * 30.01367 * 1 2 3 23 23 H 1.08994 * 109.47046 * 150.02170 * 1 2 3 24 24 H 1.07996 * 124.50868 * 0.02562 * 3 2 1 25 25 H 1.09000 * 109.46913 * 83.48987 * 9 8 6 26 26 H 1.08998 * 109.47338 * 203.48930 * 9 8 6 27 27 H 1.08997 * 109.47081 * 323.49368 * 9 8 6 28 28 H 1.09002 * 109.47035 * 209.99501 * 10 8 6 29 29 H 1.08995 * 109.47093 * 329.99470 * 10 8 6 30 30 H 0.96997 * 119.99862 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2248 1.1289 0.0000 4 16 3.8970 0.7899 0.0007 5 6 3.5952 -0.9423 0.0002 6 6 4.6248 -1.9842 0.0010 7 8 4.3130 -3.1477 0.1762 8 7 5.9172 -1.6546 -0.1920 9 6 6.2934 -0.2533 -0.3954 10 6 6.9461 -2.6975 -0.1985 11 6 7.1297 -3.2132 -1.6026 12 1 6.5394 -2.8046 -2.4095 13 6 8.0521 -4.2058 -1.8573 14 7 8.7713 -4.7030 -0.8749 15 14 8.2803 -4.8445 -3.5979 16 1 8.7001 -3.7289 -4.4834 17 1 9.3231 -5.9017 -3.6044 18 1 6.9985 -5.4110 -4.0892 19 6 2.2452 -1.1609 -0.0010 20 35 1.4708 -2.8860 -0.0012 21 1 -0.3633 0.0003 1.0277 22 1 -0.3634 0.8898 -0.5140 23 1 -0.3633 -0.8901 -0.5135 24 1 1.8021 2.1227 0.0004 25 1 6.3963 0.2392 0.5715 26 1 7.2419 -0.2057 -0.9303 27 1 5.5217 0.2490 -0.9786 28 1 7.8871 -2.2818 0.1619 29 1 6.6377 -3.5161 0.4517 30 1 9.4199 -5.4016 -1.0540 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277209520.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:17 Heat of formation + Delta-G solvation = -12.179840 kcal Electronic energy + Delta-G solvation = -16489.658980 eV Core-core repulsion = 13650.604154 eV Total energy + Delta-G solvation = -2839.054826 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.79072 -39.14302 -36.64915 -34.79080 -32.63538 -31.54220 -30.01327 -28.26964 -27.65334 -25.85561 -23.82891 -20.86265 -19.84539 -18.84426 -18.68412 -17.25270 -17.01138 -16.46526 -16.40186 -15.36936 -15.05996 -14.47297 -14.31877 -14.19071 -14.02277 -13.69405 -13.44058 -13.21548 -13.10892 -12.87919 -12.87515 -12.57450 -12.22782 -11.80730 -11.74640 -11.48712 -11.31955 -10.63888 -10.43035 -9.87003 -9.51293 -9.19632 -8.22620 -6.37083 -0.63862 0.07201 0.86499 1.13695 1.19768 1.36818 1.41258 1.48342 2.07891 2.28329 2.41167 3.07401 3.55655 3.98745 4.05814 4.14526 4.47744 4.51535 4.60104 4.77748 4.82062 4.87632 4.99010 5.20566 5.25683 5.35600 5.50196 5.77777 6.04080 6.57667 6.70703 7.21888 7.37164 8.84306 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.019027 B = 0.005283 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.228901 B = 5298.950963 C = 6237.465118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.115 4.115 3 C -0.249 4.249 4 S 0.332 5.668 5 C -0.279 4.279 6 C 0.557 3.443 7 O -0.557 6.557 8 N -0.602 5.602 9 C 0.061 3.939 10 C 0.263 3.737 11 C -0.544 4.544 12 H 0.051 0.949 13 C 0.012 3.988 14 N -0.926 5.926 15 Si 0.964 3.036 16 H -0.259 1.259 17 H -0.277 1.277 18 H -0.281 1.281 19 C -0.052 4.052 20 Br -0.022 7.022 21 H 0.081 0.919 22 H 0.095 0.905 23 H 0.062 0.938 24 H 0.211 0.789 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.034 0.966 29 H 0.003 0.997 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.997 16.857 1.733 22.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.127 4.127 3 C -0.387 4.387 4 S 0.602 5.398 5 C -0.402 4.402 6 C 0.345 3.655 7 O -0.437 6.437 8 N -0.334 5.334 9 C -0.083 4.083 10 C 0.143 3.857 11 C -0.583 4.583 12 H 0.069 0.931 13 C -0.187 4.187 14 N -0.565 5.565 15 Si 0.789 3.211 16 H -0.183 1.183 17 H -0.202 1.202 18 H -0.207 1.207 19 C -0.149 4.149 20 Br 0.063 6.937 21 H 0.100 0.900 22 H 0.114 0.886 23 H 0.081 0.919 24 H 0.228 0.772 25 H 0.105 0.895 26 H 0.115 0.885 27 H 0.099 0.901 28 H 0.052 0.948 29 H 0.021 0.979 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.973 16.434 1.880 21.654 hybrid contribution -0.768 -1.489 -0.681 1.809 sum -14.741 14.945 1.199 21.026 Atomic orbital electron populations 1.20672 0.87349 1.04003 1.03548 1.18641 0.99348 0.89362 1.05324 1.26141 1.01769 1.03954 1.06839 1.83162 1.00962 0.91783 1.63902 1.24649 0.96437 1.00942 1.18176 1.17416 0.82415 0.87588 0.78082 1.90840 1.81173 1.20573 1.51118 1.48020 1.06454 1.09658 1.69224 1.22188 1.02811 0.80168 1.03102 1.18838 0.85108 0.85599 0.96178 1.21630 1.21059 1.21255 0.94332 0.93072 1.25791 0.95158 0.96083 1.01682 1.70031 1.24736 1.28223 1.33532 0.85518 0.77612 0.78507 0.79488 1.18298 1.20196 1.20692 1.21477 0.93041 0.93695 1.06711 1.96664 1.80720 1.19236 1.97095 0.90037 0.88638 0.91905 0.77239 0.89500 0.88477 0.90071 0.94844 0.97911 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.67 9.81 71.24 0.70 -0.98 16 2 C -0.11 -2.66 5.78 -21.04 -0.12 -2.78 16 3 C -0.25 -4.38 10.67 66.81 0.71 -3.67 16 4 S 0.33 6.93 17.91 -56.49 -1.01 5.92 16 5 C -0.28 -9.62 6.22 24.07 0.15 -9.47 16 6 C 0.56 25.23 7.62 86.39 0.66 25.88 16 7 O -0.56 -30.14 14.37 -4.42 -0.06 -30.20 16 8 N -0.60 -26.42 2.86 -856.11 -2.45 -28.87 16 9 C 0.06 1.84 8.92 127.77 1.14 2.98 16 10 C 0.26 14.27 5.13 85.63 0.44 14.71 16 11 C -0.54 -31.55 9.39 25.60 0.24 -31.31 16 12 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 13 C 0.01 0.71 5.46 84.66 0.46 1.17 16 14 N -0.93 -55.90 13.29 21.45 0.28 -55.62 16 15 Si 0.96 45.17 29.54 68.60 2.03 47.20 16 16 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 18 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 19 C -0.05 -1.68 6.28 21.76 0.14 -1.54 16 20 Br -0.02 -0.78 30.46 -20.37 -0.62 -1.40 16 21 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 22 H 0.09 1.11 8.12 -2.39 -0.02 1.09 16 23 H 0.06 1.22 7.19 -2.39 -0.02 1.20 16 24 H 0.21 1.89 8.06 -2.91 -0.02 1.87 16 25 H 0.09 2.06 7.76 -2.39 -0.02 2.04 16 26 H 0.10 2.88 8.02 -2.39 -0.02 2.86 16 27 H 0.08 2.06 4.64 -20.47 -0.09 1.97 16 28 H 0.03 1.79 8.07 -2.39 -0.02 1.77 16 29 H 0.00 0.17 7.41 -2.39 -0.02 0.16 16 30 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -75.17 288.56 3.76 -71.41 By element: Atomic # 1 Polarization: -4.53 SS G_CDS: 1.08 Total: -3.45 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 4.52 Total: -5.00 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -2.16 Total: -84.49 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.06 Total: -30.20 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: 6.93 SS G_CDS: -1.01 Total: 5.92 kcal Atomic # 35 Polarization: -0.78 SS G_CDS: -0.62 Total: -1.40 kcal Total: -75.17 3.76 -71.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277209520.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.230 kcal (2) G-P(sol) polarization free energy of solvation -75.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds