Wall clock time and date at job start Tue Mar 31 2020 11:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47444 * 2 1 4 4 C 1.36899 * 119.99998 * 260.62411 * 3 2 1 5 5 H 1.08002 * 120.00037 * 194.44196 * 4 3 2 6 6 C 1.38991 * 119.99911 * 14.43728 * 4 3 2 7 7 N 1.31411 * 120.00228 * 22.38513 * 6 4 3 8 8 Si 1.86798 * 120.00148 * 202.37947 * 6 4 3 9 9 H 1.48498 * 109.46943 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47093 * 120.00224 * 8 6 4 11 11 H 1.48492 * 109.47458 * 240.00518 * 8 6 4 12 12 C 1.34777 * 119.99984 * 80.61658 * 3 2 1 13 13 O 1.21763 * 119.99813 * 183.06726 * 12 3 2 14 14 C 1.46354 * 120.00186 * 3.07077 * 12 3 2 15 15 S 1.75829 * 125.46114 * 351.46772 * 14 12 3 16 16 C 1.70612 * 91.58373 * 180.02562 * 15 14 12 17 17 C 1.33817 * 111.00135 * 0.02562 * 16 15 14 18 18 C 1.50702 * 122.44380 * 180.02562 * 17 16 15 19 19 C 1.36881 * 125.46739 * 171.49315 * 14 12 3 20 20 Br 1.89101 * 123.38218 * 359.97438 * 19 14 12 21 21 H 1.08997 * 109.47249 * 300.00235 * 1 2 3 22 22 H 1.09007 * 109.47247 * 60.00262 * 1 2 3 23 23 H 1.08996 * 109.47410 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47249 * 239.99765 * 2 1 3 25 25 H 1.08997 * 109.46917 * 120.00205 * 2 1 3 26 26 H 0.96999 * 119.99891 * 179.97438 * 7 6 4 27 27 H 1.07998 * 124.49962 * 179.97438 * 16 15 14 28 28 H 1.08998 * 109.47053 * 269.97816 * 18 17 16 29 29 H 1.09012 * 109.46935 * 29.97623 * 18 17 16 30 30 H 1.09001 * 109.46968 * 149.97153 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4287 1.9621 -1.1697 5 1 2.9995 2.8787 -1.1463 6 6 2.1107 1.3723 -2.3875 7 7 1.0898 0.5493 -2.4723 8 14 3.1346 1.7496 -3.9036 9 1 4.2191 2.6985 -3.5449 10 1 3.7294 0.4926 -4.4246 11 1 2.2696 2.3573 -4.9465 12 6 2.0636 2.0799 1.1516 13 8 2.4165 3.2453 1.1431 14 6 1.6887 1.4381 2.4123 15 16 0.9614 -0.1551 2.5690 16 6 0.9072 -0.0151 4.2686 17 6 1.4073 1.1596 4.6692 18 6 1.4842 1.5523 6.1222 19 6 1.8474 1.9818 3.6584 20 35 2.5959 3.6920 3.9597 21 1 -0.3633 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 0.8678 0.1380 -3.3223 27 1 0.5199 -0.7736 4.9327 28 1 0.5673 2.0674 6.4084 29 1 1.6050 0.6583 6.7342 30 1 2.3362 2.2148 6.2748 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277491940.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:12 Heat of formation + Delta-G solvation = 4.616831 kcal Electronic energy + Delta-G solvation = -17025.684767 eV Core-core repulsion = 14187.358300 eV Total energy + Delta-G solvation = -2838.326467 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -40.61725 -39.08150 -36.96933 -34.02545 -32.41118 -31.47453 -31.22709 -28.43206 -27.11500 -24.80959 -23.96978 -21.28652 -19.73226 -19.02482 -18.67650 -17.18958 -16.68939 -16.10966 -15.94453 -15.55657 -14.96371 -14.87299 -14.11084 -14.04570 -13.81673 -13.41249 -13.20225 -13.12468 -12.85848 -12.77377 -12.67997 -12.22064 -12.17592 -12.06344 -11.48254 -11.30747 -11.14089 -10.94536 -10.10676 -9.82707 -9.57751 -9.00182 -8.40242 -5.89597 -0.46444 0.23337 1.06082 1.27498 1.33048 1.42792 1.44490 1.57145 2.25147 2.32605 2.93182 3.07879 3.81225 4.13024 4.16083 4.29933 4.60311 4.66696 4.68747 4.75949 4.84713 4.97111 5.06598 5.30374 5.34122 5.40374 5.43583 5.85240 6.02385 6.46672 7.11356 7.34472 7.96667 8.58183 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.021591 B = 0.006053 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.524712 B = 4624.584562 C = 5778.312773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.108 3.892 3 N -0.436 5.436 4 C -0.340 4.340 5 H 0.076 0.924 6 C 0.008 3.992 7 N -0.863 5.863 8 Si 0.986 3.014 9 H -0.279 1.279 10 H -0.262 1.262 11 H -0.275 1.275 12 C 0.478 3.522 13 O -0.603 6.603 14 C -0.250 4.250 15 S 0.313 5.687 16 C -0.281 4.281 17 C -0.109 4.109 18 C -0.094 4.094 19 C -0.075 4.075 20 Br -0.025 7.025 21 H 0.040 0.960 22 H 0.071 0.929 23 H 0.083 0.917 24 H 0.097 0.903 25 H 0.064 0.936 26 H 0.279 0.721 27 H 0.202 0.798 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.936 -6.147 12.486 14.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.016 4.016 3 N -0.153 5.153 4 C -0.468 4.468 5 H 0.094 0.906 6 C -0.196 4.196 7 N -0.500 5.500 8 Si 0.810 3.190 9 H -0.204 1.204 10 H -0.187 1.187 11 H -0.200 1.200 12 C 0.268 3.732 13 O -0.490 6.490 14 C -0.373 4.373 15 S 0.583 5.417 16 C -0.418 4.418 17 C -0.122 4.122 18 C -0.153 4.153 19 C -0.171 4.171 20 Br 0.060 6.940 21 H 0.058 0.942 22 H 0.089 0.911 23 H 0.102 0.898 24 H 0.115 0.885 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.219 0.781 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.045 -6.254 11.430 13.188 hybrid contribution 0.703 1.240 0.036 1.426 sum -1.342 -5.014 11.466 12.586 Atomic orbital electron populations 1.22222 0.94457 1.02730 1.01509 1.21824 0.96309 0.82514 1.00962 1.43929 1.53634 1.11725 1.06024 1.19670 1.32973 1.10564 0.83562 0.90629 1.25957 0.96217 0.96607 1.00838 1.70091 1.22402 1.29751 1.27742 0.84996 0.78268 0.78597 0.77165 1.20384 1.18661 1.20018 1.17202 0.86070 0.86474 0.83419 1.90683 1.54814 1.17172 1.86372 1.24785 1.12785 1.02781 0.96937 1.83743 1.52511 1.08991 0.96458 1.26171 1.07977 1.02248 1.05420 1.18608 1.02485 0.93723 0.97374 1.20640 1.02963 1.02910 0.88740 1.21325 1.06796 0.95190 0.93817 1.96541 1.82506 1.19477 1.95494 0.94168 0.91065 0.89796 0.88451 0.91868 0.91045 0.78067 0.90319 0.88906 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.78 8.40 71.98 0.60 -5.17 16 2 C 0.11 4.61 4.83 86.38 0.42 5.02 16 3 N -0.44 -22.61 2.65 -640.40 -1.70 -24.31 16 4 C -0.34 -18.97 9.36 84.08 0.79 -18.18 16 5 H 0.08 4.61 7.37 -2.91 -0.02 4.59 16 6 C 0.01 0.41 4.88 84.94 0.41 0.82 16 7 N -0.86 -41.60 8.71 21.67 0.19 -41.41 16 8 Si 0.99 40.50 29.61 68.60 2.03 42.53 16 9 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 10 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 11 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 12 C 0.48 25.06 7.48 86.35 0.65 25.71 16 13 O -0.60 -35.52 14.42 -4.55 -0.07 -35.58 16 14 C -0.25 -10.55 6.07 24.06 0.15 -10.40 16 15 S 0.31 9.48 15.22 -56.49 -0.86 8.62 16 16 C -0.28 -7.08 10.67 66.81 0.71 -6.36 16 17 C -0.11 -3.24 5.78 -21.04 -0.12 -3.36 16 18 C -0.09 -2.07 9.81 71.24 0.70 -1.38 16 19 C -0.07 -2.88 6.28 21.78 0.14 -2.74 16 20 Br -0.02 -0.96 30.45 -20.37 -0.62 -1.58 16 21 H 0.04 1.50 5.80 -10.00 -0.06 1.44 16 22 H 0.07 3.22 6.26 -2.38 -0.01 3.21 16 23 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 24 H 0.10 4.38 5.98 -2.39 -0.01 4.37 16 25 H 0.06 2.36 4.58 -20.93 -0.10 2.27 16 26 H 0.28 12.42 8.31 -92.71 -0.77 11.65 16 27 H 0.20 3.35 8.06 -2.91 -0.02 3.33 16 28 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.09 1.51 8.12 -2.38 -0.02 1.50 16 30 H 0.06 1.50 7.19 -2.39 -0.02 1.48 16 Total: -1.00 -65.17 273.89 4.47 -60.70 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: 1.05 Total: 7.06 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: 4.44 Total: -16.04 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: -1.51 Total: -65.72 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -0.07 Total: -35.58 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 16 Polarization: 9.48 SS G_CDS: -0.86 Total: 8.62 kcal Atomic # 35 Polarization: -0.96 SS G_CDS: -0.62 Total: -1.58 kcal Total: -65.17 4.47 -60.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277491940.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.320 kcal (2) G-P(sol) polarization free energy of solvation -65.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds