Wall clock time and date at job start Tue Mar 31 2020 11:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.75489 * 124.68433 * 2 1 4 4 C 1.70452 * 92.46924 * 179.97438 * 3 2 1 5 5 Br 1.89092 * 124.60697 * 179.97438 * 4 3 2 6 6 C 1.36261 * 110.78197 * 0.22650 * 4 3 2 7 7 C 1.47008 * 123.49173 * 179.73567 * 6 4 3 8 8 O 1.21679 * 119.99995 * 90.02510 * 7 6 4 9 9 N 1.34772 * 120.00033 * 270.02513 * 7 6 4 10 10 C 1.46505 * 119.99983 * 359.97438 * 9 7 6 11 11 C 1.36978 * 120.00066 * 180.02562 * 9 7 6 12 12 H 1.07997 * 119.99984 * 322.83774 * 11 9 7 13 13 C 1.38964 * 119.99950 * 142.84163 * 11 9 7 14 14 N 1.31424 * 120.00185 * 158.29699 * 13 11 9 15 15 Si 1.86796 * 120.00111 * 338.29226 * 13 11 9 16 16 H 1.48497 * 109.47318 * 95.71580 * 15 13 11 17 17 H 1.48497 * 109.47486 * 215.72312 * 15 13 11 18 18 H 1.48499 * 109.47032 * 335.71963 * 15 13 11 19 19 C 1.32712 * 124.68109 * 179.97438 * 2 1 3 20 20 C 1.50700 * 123.44984 * 0.03023 * 19 2 1 21 21 H 1.08999 * 109.46928 * 0.02763 * 1 2 3 22 22 H 1.08996 * 109.47059 * 120.02422 * 1 2 3 23 23 H 1.09001 * 109.47284 * 240.02607 * 1 2 3 24 24 H 1.09000 * 109.46927 * 85.14722 * 10 9 7 25 25 H 1.08996 * 109.47505 * 205.14887 * 10 9 7 26 26 H 1.09002 * 109.47067 * 325.15382 * 10 9 7 27 27 H 0.96994 * 119.99997 * 179.97438 * 14 13 11 28 28 H 1.09005 * 109.46770 * 90.01991 * 20 19 2 29 29 H 1.09001 * 109.47107 * 210.01921 * 20 19 2 30 30 H 1.08998 * 109.46741 * 330.02191 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5056 1.4430 0.0000 4 6 3.9477 0.5344 0.0008 5 35 5.6860 1.2786 0.0005 6 6 3.6777 -0.8012 -0.0040 7 6 4.7185 -1.8393 -0.0103 8 8 5.1511 -2.2735 1.0408 9 7 5.1936 -2.3101 -1.1803 10 6 4.6724 -1.7878 -2.4460 11 6 6.1631 -3.2778 -1.1862 12 1 6.9456 -3.2627 -0.4420 13 6 6.1398 -4.2788 -2.1498 14 7 7.2398 -4.9365 -2.4409 15 14 4.5450 -4.6898 -3.0313 16 1 4.4898 -3.9575 -4.3219 17 1 4.4838 -6.1511 -3.2882 18 1 3.3935 -4.2876 -2.1843 19 6 2.2621 -1.0913 0.0005 20 6 1.7008 -2.4899 0.0004 21 1 -0.3633 1.0277 -0.0005 22 1 -0.3633 -0.5142 -0.8897 23 1 -0.3634 -0.5134 0.8902 24 1 5.2127 -0.8800 -2.7144 25 1 4.8045 -2.5343 -3.2291 26 1 3.6120 -1.5603 -2.3360 27 1 7.2234 -5.6354 -3.1132 28 1 1.5663 -2.8273 -1.0273 29 1 2.3910 -3.1584 0.5150 30 1 0.7392 -2.4953 0.5135 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282428896.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:39 Heat of formation + Delta-G solvation = -15.185528 kcal Electronic energy + Delta-G solvation = -17052.521416 eV Core-core repulsion = 14213.336254 eV Total energy + Delta-G solvation = -2839.185162 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.02141 -38.60849 -36.78355 -34.31912 -33.91219 -31.60406 -30.29843 -28.39297 -27.67882 -25.89740 -24.38639 -20.96915 -19.45920 -19.11783 -18.58234 -17.91745 -17.30352 -16.27006 -15.65417 -15.36210 -15.19328 -14.63691 -14.38387 -14.19562 -13.99852 -13.75025 -13.60726 -13.55042 -13.44567 -13.02061 -12.82409 -12.67329 -12.33751 -11.89161 -11.83925 -11.63643 -11.39974 -11.14539 -10.62546 -9.82080 -9.56081 -9.28832 -8.56364 -6.20213 -0.38292 -0.02492 0.60740 0.83221 1.15830 1.17058 1.28757 1.43405 1.75842 2.14722 2.66510 2.88082 3.69068 3.89101 4.01434 4.19586 4.33099 4.40079 4.55777 4.64488 4.68358 4.73611 4.84917 4.87868 5.07414 5.23690 5.43242 5.48229 5.97896 6.45126 6.82732 7.17401 7.72909 8.60295 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.015481 B = 0.007644 C = 0.005709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.211584 B = 3662.322900 C = 4903.628844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.168 4.168 3 S 0.273 5.727 4 C -0.244 4.244 5 Br 0.003 6.997 6 C -0.095 4.095 7 C 0.521 3.479 8 O -0.607 6.607 9 N -0.458 5.458 10 C 0.064 3.936 11 C -0.338 4.338 12 H 0.046 0.954 13 C 0.016 3.984 14 N -0.904 5.904 15 Si 0.946 3.054 16 H -0.241 1.241 17 H -0.284 1.284 18 H -0.250 1.250 19 C -0.107 4.107 20 C -0.092 4.092 21 H 0.090 0.910 22 H 0.096 0.904 23 H 0.093 0.907 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.283 0.717 28 H 0.078 0.922 29 H 0.035 0.965 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.282 14.975 -0.883 22.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.286 4.286 3 S 0.541 5.459 4 C -0.441 4.441 5 Br 0.087 6.913 6 C -0.116 4.116 7 C 0.309 3.691 8 O -0.492 6.492 9 N -0.178 5.178 10 C -0.078 4.078 11 C -0.466 4.466 12 H 0.064 0.936 13 C -0.187 4.187 14 N -0.540 5.540 15 Si 0.769 3.231 16 H -0.166 1.166 17 H -0.211 1.211 18 H -0.173 1.173 19 C -0.118 4.118 20 C -0.151 4.151 21 H 0.109 0.891 22 H 0.115 0.885 23 H 0.112 0.888 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.576 16.489 -0.506 23.386 hybrid contribution 0.831 -2.366 -0.112 2.510 sum -15.746 14.123 -0.618 21.161 Atomic orbital electron populations 1.20576 0.83704 1.04861 1.04752 1.24779 1.02363 0.94612 1.06887 1.82410 0.87750 1.05737 1.70020 1.26040 0.99947 0.99174 1.18970 1.96691 1.15086 1.81689 1.97786 1.20343 0.95227 0.91874 1.04173 1.18001 0.82927 0.84164 0.84010 1.90648 1.62591 1.63007 1.32932 1.43565 1.34790 1.34863 1.04608 1.22128 0.99618 0.99685 0.86366 1.18622 1.04248 1.07019 1.16676 0.93625 1.26175 1.00635 0.94564 0.97333 1.69863 1.28588 1.23817 1.31761 0.85871 0.79830 0.77819 0.79618 1.16550 1.21070 1.17328 1.19711 0.88547 0.98205 1.05380 1.20526 1.01539 0.90015 1.03035 0.89076 0.88527 0.88822 0.91661 0.91606 0.89911 0.90764 0.90307 0.94566 0.87440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 9.45 71.24 0.67 -0.30 16 2 C -0.17 -3.71 6.44 24.51 0.16 -3.56 16 3 S 0.27 6.20 22.98 -56.49 -1.30 4.90 16 4 C -0.24 -8.24 6.76 67.36 0.46 -7.79 16 5 Br 0.00 0.12 33.48 -20.37 -0.68 -0.56 16 6 C -0.09 -3.70 4.03 -19.85 -0.08 -3.78 16 7 C 0.52 26.48 5.99 86.54 0.52 27.00 16 8 O -0.61 -36.79 16.97 -4.28 -0.07 -36.86 16 9 N -0.46 -23.55 2.58 -663.07 -1.71 -25.27 16 10 C 0.06 2.62 8.79 127.77 1.12 3.75 16 11 C -0.34 -20.50 9.37 84.06 0.79 -19.71 16 12 H 0.05 3.24 7.90 -2.91 -0.02 3.22 16 13 C 0.02 0.91 5.29 84.93 0.45 1.36 16 14 N -0.90 -54.08 13.96 21.67 0.30 -53.78 16 15 Si 0.95 41.52 24.97 68.60 1.71 43.24 16 16 H -0.24 -9.24 6.69 99.48 0.67 -8.58 16 17 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.25 -10.44 7.11 99.48 0.71 -9.73 16 19 C -0.11 -3.28 5.69 -19.44 -0.11 -3.39 16 20 C -0.09 -2.64 9.68 71.24 0.69 -1.95 16 21 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 22 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.09 0.96 7.94 -2.39 -0.02 0.94 16 24 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 25 H 0.07 2.69 3.42 -2.39 -0.01 2.68 16 26 H 0.08 2.86 6.83 -2.39 -0.02 2.85 16 27 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 28 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 29 H 0.04 1.31 7.70 -2.39 -0.02 1.29 16 30 H 0.11 2.15 7.38 -2.39 -0.02 2.13 16 Total: -1.00 -76.78 289.37 4.04 -72.74 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: 1.13 Total: 3.95 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: 4.66 Total: -8.36 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -1.41 Total: -79.05 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -0.07 Total: -36.86 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.71 Total: 43.24 kcal Atomic # 16 Polarization: 6.20 SS G_CDS: -1.30 Total: 4.90 kcal Atomic # 35 Polarization: 0.12 SS G_CDS: -0.68 Total: -0.56 kcal Total: -76.78 4.04 -72.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282428896.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.554 kcal (2) G-P(sol) polarization free energy of solvation -76.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds