Wall clock time and date at job start Tue Mar 31 2020 11:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.46972 * 2 1 4 4 C 1.46497 * 119.99768 * 85.34784 * 3 2 1 5 5 C 1.50696 * 109.46980 * 90.00082 * 4 3 2 6 6 H 1.07994 * 120.00550 * 0.02562 * 5 4 3 7 7 C 1.37886 * 119.99547 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00242 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99498 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47496 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47165 * 120.00159 * 9 7 5 12 12 H 1.48504 * 109.47040 * 239.99927 * 9 7 5 13 13 C 1.34774 * 119.99801 * 265.34831 * 3 2 1 14 14 O 1.21640 * 120.00300 * 5.25030 * 13 3 2 15 15 C 1.47169 * 119.99591 * 185.25180 * 13 3 2 16 16 C 1.36030 * 123.46534 * 52.65504 * 15 13 3 17 17 S 1.70448 * 110.82963 * 179.97438 * 16 15 13 18 18 C 1.75507 * 92.45272 * 359.97438 * 17 16 15 19 19 C 1.32826 * 110.57996 * 359.75662 * 18 17 16 20 20 Br 1.89096 * 123.46771 * 180.21685 * 19 18 17 21 21 H 1.09001 * 109.47687 * 59.99880 * 1 2 3 22 22 H 1.09007 * 109.47158 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47122 * 299.99660 * 1 2 3 24 24 H 1.08996 * 109.47229 * 120.00182 * 2 1 3 25 25 H 1.09001 * 109.47122 * 240.00340 * 2 1 3 26 26 H 1.09007 * 109.47215 * 210.00133 * 4 3 2 27 27 H 1.09000 * 109.47304 * 329.99893 * 4 3 2 28 28 H 0.96998 * 119.99753 * 180.02562 * 8 7 5 29 29 H 1.07995 * 124.58601 * 359.95279 * 16 15 13 30 30 H 1.08004 * 124.70850 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1654 2.1061 1.2646 5 6 3.5510 1.8827 1.8133 6 1 4.2521 1.2631 1.2740 7 6 3.9240 2.4702 3.0037 8 7 3.0708 3.2259 3.6598 9 14 5.6418 2.1938 3.6836 10 1 6.4027 1.3116 2.7627 11 1 6.3400 3.4983 3.8099 12 1 5.5481 1.5512 5.0191 13 6 2.3321 1.9850 -1.1634 14 8 2.1205 1.4188 -2.2189 15 6 2.9310 3.3294 -1.1565 16 6 4.0363 3.6545 -0.4334 17 16 4.4506 5.2919 -0.6626 18 6 3.1070 5.5563 -1.7604 19 6 2.4093 4.4377 -1.9224 20 35 0.8862 4.3106 -3.0359 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 2.0099 3.1713 1.0930 27 1 1.4281 1.7420 1.9800 28 1 3.3334 3.6395 4.4970 29 1 4.5779 2.9681 0.2006 30 1 2.8815 6.4968 -2.2411 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285093829.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:10 Heat of formation + Delta-G solvation = -4.164783 kcal Electronic energy + Delta-G solvation = -16994.832679 eV Core-core repulsion = 14156.125413 eV Total energy + Delta-G solvation = -2838.707267 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -39.33486 -36.53780 -35.17171 -32.89648 -31.25499 -30.27366 -28.57062 -27.20202 -24.45430 -23.15464 -22.42774 -19.90564 -18.07281 -17.21873 -16.56611 -16.22240 -15.41883 -14.66817 -14.45720 -13.81331 -13.22089 -12.94197 -12.83130 -12.61254 -12.40961 -12.08038 -11.79410 -11.56469 -11.42795 -11.02572 -10.90353 -10.82675 -10.48384 -10.41645 -10.16594 -9.91577 -9.78308 -9.11540 -8.68224 -8.43458 -7.95876 -7.71923 -6.28962 -4.36011 1.29848 1.44855 2.13354 2.38270 2.65610 3.11486 3.21936 3.23888 3.60838 4.00952 4.24164 5.01479 5.10429 5.45832 5.70222 5.82135 5.85519 5.92535 5.97409 6.27791 6.35087 6.48040 6.58392 6.68319 6.78182 7.17897 7.53475 7.65474 7.96793 8.30113 8.68869 8.99510 9.29079 10.76733 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.015696 B = 0.006829 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.410802 B = 4099.344518 C = 5356.813722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.117 3.883 3 N -0.589 5.589 4 C 0.237 3.763 5 C -0.540 4.540 6 H 0.063 0.937 7 C 0.069 3.931 8 N -0.879 5.879 9 Si 0.886 3.114 10 H -0.270 1.270 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.578 3.422 14 O -0.555 6.555 15 C -0.142 4.142 16 C -0.160 4.160 17 S 0.189 5.811 18 C -0.223 4.223 19 C -0.059 4.059 20 Br -0.026 7.026 21 H 0.054 0.946 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.266 0.734 29 H 0.201 0.799 30 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.349 4.048 -8.348 9.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.007 4.007 3 N -0.319 5.319 4 C 0.117 3.883 5 C -0.579 4.579 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.516 5.516 9 Si 0.712 3.288 10 H -0.194 1.194 11 H -0.205 1.205 12 H -0.206 1.206 13 C 0.364 3.636 14 O -0.435 6.435 15 C -0.158 4.158 16 C -0.298 4.298 17 S 0.453 5.547 18 C -0.361 4.361 19 C -0.152 4.152 20 Br 0.058 6.942 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.218 0.782 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.914 4.722 -8.540 9.801 hybrid contribution 0.063 -0.927 0.512 1.061 sum -0.851 3.794 -8.028 8.920 Atomic orbital electron populations 1.22104 0.96775 1.01171 1.02115 1.21248 0.93614 0.83377 1.02415 1.48130 1.62353 1.13532 1.07872 1.19431 0.97122 0.92502 0.79258 1.21517 0.98480 1.31268 1.06610 0.91846 1.24945 0.97506 0.94780 0.96346 1.69928 1.34839 1.30903 1.15969 0.86624 0.84222 0.78395 0.79515 1.19440 1.20521 1.20554 1.17463 0.77806 0.84488 0.83845 1.90712 1.55624 1.66093 1.31094 1.19765 0.99017 0.95080 1.01943 1.26411 1.01473 1.01193 1.00685 1.82951 1.26626 1.04733 1.40358 1.25336 1.02138 1.01700 1.06925 1.21535 0.97438 0.94776 1.01473 1.96624 1.34866 1.98877 1.63816 0.92689 0.92455 0.92550 0.90553 0.90911 0.94368 0.94534 0.92373 0.78199 0.81274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 10.24 37.16 0.38 -2.30 16 2 C 0.12 2.17 6.14 -4.04 -0.02 2.15 16 3 N -0.59 -12.63 2.46 -176.42 -0.43 -13.06 16 4 C 0.24 5.55 4.74 -5.20 -0.02 5.52 16 5 C -0.54 -13.11 6.43 -34.44 -0.22 -13.33 16 6 H 0.06 1.55 7.47 -52.49 -0.39 1.16 16 7 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.88 -23.07 13.29 55.43 0.74 -22.33 16 9 Si 0.89 19.19 29.54 -169.99 -5.02 14.17 16 10 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 11 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 13 C 0.58 12.71 6.98 -12.64 -0.09 12.62 16 14 O -0.55 -12.95 16.19 5.24 0.08 -12.86 16 15 C -0.14 -2.89 4.61 -104.61 -0.48 -3.37 16 16 C -0.16 -3.08 8.89 29.94 0.27 -2.82 16 17 S 0.19 2.92 23.02 -107.50 -2.47 0.44 16 18 C -0.22 -3.42 10.97 28.87 0.32 -3.11 16 19 C -0.06 -1.08 6.39 -38.99 -0.25 -1.32 16 20 Br -0.03 -0.43 33.08 -68.01 -2.25 -2.68 16 21 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.08 1.38 8.11 -51.93 -0.42 0.95 16 25 H 0.07 1.35 7.36 -51.93 -0.38 0.97 16 26 H 0.04 0.96 6.68 -51.93 -0.35 0.61 16 27 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 28 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 29 H 0.20 4.14 5.34 -52.49 -0.28 3.86 16 30 H 0.17 2.06 8.06 -52.48 -0.42 1.64 16 LS Contribution 293.56 15.07 4.42 4.42 Total: -1.00 -27.34 293.56 -8.23 -35.57 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -3.07 Total: 0.68 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -0.22 Total: -4.35 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.30 Total: -35.39 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.08 Total: -12.86 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.47 Total: 0.44 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -2.25 Total: -2.68 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.34 -8.23 -35.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285093829.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.404 kcal (2) G-P(sol) polarization free energy of solvation -27.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds