Wall clock time and date at job start Tue Mar 31 2020 11:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.46972 * 2 1 4 4 C 1.46497 * 119.99768 * 85.34784 * 3 2 1 5 5 C 1.50696 * 109.46980 * 90.00082 * 4 3 2 6 6 H 1.07994 * 120.00550 * 0.02562 * 5 4 3 7 7 C 1.37886 * 119.99547 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00242 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99498 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47496 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47165 * 120.00159 * 9 7 5 12 12 H 1.48504 * 109.47040 * 239.99927 * 9 7 5 13 13 C 1.34774 * 119.99801 * 265.34831 * 3 2 1 14 14 O 1.21640 * 120.00300 * 5.25030 * 13 3 2 15 15 C 1.47169 * 119.99591 * 185.25180 * 13 3 2 16 16 C 1.36030 * 123.46534 * 52.65504 * 15 13 3 17 17 S 1.70448 * 110.82963 * 179.97438 * 16 15 13 18 18 C 1.75507 * 92.45272 * 359.97438 * 17 16 15 19 19 C 1.32826 * 110.57996 * 359.75662 * 18 17 16 20 20 Br 1.89096 * 123.46771 * 180.21685 * 19 18 17 21 21 H 1.09001 * 109.47687 * 59.99880 * 1 2 3 22 22 H 1.09007 * 109.47158 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47122 * 299.99660 * 1 2 3 24 24 H 1.08996 * 109.47229 * 120.00182 * 2 1 3 25 25 H 1.09001 * 109.47122 * 240.00340 * 2 1 3 26 26 H 1.09007 * 109.47215 * 210.00133 * 4 3 2 27 27 H 1.09000 * 109.47304 * 329.99893 * 4 3 2 28 28 H 0.96998 * 119.99753 * 180.02562 * 8 7 5 29 29 H 1.07995 * 124.58601 * 359.95279 * 16 15 13 30 30 H 1.08004 * 124.70850 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1654 2.1061 1.2646 5 6 3.5510 1.8827 1.8133 6 1 4.2521 1.2631 1.2740 7 6 3.9240 2.4702 3.0037 8 7 3.0708 3.2259 3.6598 9 14 5.6418 2.1938 3.6836 10 1 6.4027 1.3116 2.7627 11 1 6.3400 3.4983 3.8099 12 1 5.5481 1.5512 5.0191 13 6 2.3321 1.9850 -1.1634 14 8 2.1205 1.4188 -2.2189 15 6 2.9310 3.3294 -1.1565 16 6 4.0363 3.6545 -0.4334 17 16 4.4506 5.2919 -0.6626 18 6 3.1070 5.5563 -1.7604 19 6 2.4093 4.4377 -1.9224 20 35 0.8862 4.3106 -3.0359 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 2.0099 3.1713 1.0930 27 1 1.4281 1.7420 1.9800 28 1 3.3334 3.6395 4.4970 29 1 4.5779 2.9681 0.2006 30 1 2.8815 6.4968 -2.2411 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285093829.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:09 Heat of formation + Delta-G solvation = -18.595414 kcal Electronic energy + Delta-G solvation = -16995.458439 eV Core-core repulsion = 14156.125413 eV Total energy + Delta-G solvation = -2839.333026 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.97671 -37.97019 -36.92060 -34.73895 -32.70554 -31.73288 -29.95341 -29.05232 -25.95058 -25.01777 -23.87916 -21.37915 -19.61639 -18.74422 -18.38957 -17.84542 -17.04687 -16.34505 -16.09792 -15.33446 -14.65116 -14.42472 -14.40459 -14.19820 -13.98758 -13.60297 -13.34827 -13.15765 -13.08934 -12.68868 -12.63374 -12.23015 -12.08862 -11.84279 -11.73514 -11.66061 -11.21768 -10.78928 -10.59412 -9.81689 -9.48576 -9.25653 -8.19689 -6.32910 -0.07583 0.16121 0.74207 0.92852 1.33080 1.39838 1.45357 1.53624 1.97295 2.31780 2.50099 3.10113 3.72908 3.93702 4.24981 4.39345 4.54342 4.55627 4.57237 4.80909 4.91110 4.97826 5.06310 5.11343 5.18008 5.32419 5.66050 5.85847 6.05358 6.52616 6.79405 7.26353 7.38771 8.86099 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.015696 B = 0.006829 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.410802 B = 4099.344518 C = 5356.813722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.110 3.890 3 N -0.593 5.593 4 C 0.256 3.744 5 C -0.538 4.538 6 H 0.058 0.942 7 C 0.031 3.969 8 N -0.911 5.911 9 Si 0.943 3.057 10 H -0.267 1.267 11 H -0.272 1.272 12 H -0.281 1.281 13 C 0.573 3.427 14 O -0.575 6.575 15 C -0.165 4.165 16 C -0.188 4.188 17 S 0.258 5.742 18 C -0.203 4.203 19 C -0.090 4.090 20 Br -0.021 7.021 21 H 0.042 0.958 22 H 0.089 0.911 23 H 0.049 0.951 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.268 0.732 29 H 0.183 0.817 30 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.535 4.931 -8.523 9.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 N -0.323 5.323 4 C 0.136 3.864 5 C -0.576 4.576 6 H 0.076 0.924 7 C -0.170 4.170 8 N -0.550 5.550 9 Si 0.768 3.232 10 H -0.191 1.191 11 H -0.198 1.198 12 H -0.207 1.207 13 C 0.360 3.640 14 O -0.458 6.458 15 C -0.182 4.182 16 C -0.326 4.326 17 S 0.523 5.477 18 C -0.341 4.341 19 C -0.182 4.182 20 Br 0.063 6.937 21 H 0.061 0.939 22 H 0.108 0.892 23 H 0.068 0.932 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.200 0.800 30 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -0.097 5.596 -8.717 10.359 hybrid contribution -0.176 -1.170 0.535 1.299 sum -0.274 4.425 -8.182 9.306 Atomic orbital electron populations 1.22009 0.94906 1.03024 1.01125 1.21444 0.95184 0.82084 1.02541 1.48191 1.62451 1.14428 1.07211 1.19040 0.96368 0.91466 0.79560 1.21556 0.98577 1.30912 1.06596 0.92399 1.25549 1.00529 0.94455 0.96498 1.70021 1.36517 1.31958 1.16459 0.85732 0.80445 0.78483 0.78560 1.19112 1.19756 1.20716 1.17799 0.77471 0.85231 0.83506 1.90679 1.56677 1.66878 1.31522 1.19855 0.99848 0.95064 1.03438 1.26303 1.01540 1.03768 1.00995 1.82651 1.25346 1.00875 1.38834 1.25826 1.00741 1.02158 1.05378 1.21600 0.98819 0.95025 1.02783 1.96602 1.34670 1.98927 1.63542 0.93897 0.89203 0.93158 0.90144 0.90946 0.96272 0.96266 0.92232 0.80016 0.77654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 10.24 71.98 0.74 -4.18 16 2 C 0.11 4.10 6.14 86.38 0.53 4.63 16 3 N -0.59 -25.86 2.46 -830.32 -2.04 -27.90 16 4 C 0.26 12.25 4.74 85.63 0.41 12.66 16 5 C -0.54 -26.29 6.43 25.60 0.16 -26.13 16 6 H 0.06 2.86 7.47 -2.91 -0.02 2.84 16 7 C 0.03 1.55 5.46 84.66 0.46 2.01 16 8 N -0.91 -47.84 13.29 21.45 0.28 -47.55 16 9 Si 0.94 38.91 29.54 68.60 2.03 40.93 16 10 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 11 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 12 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 13 C 0.57 25.53 6.98 86.59 0.60 26.13 16 14 O -0.58 -27.17 16.19 -4.16 -0.07 -27.24 16 15 C -0.17 -6.72 4.61 -19.86 -0.09 -6.82 16 16 C -0.19 -7.17 8.89 67.31 0.60 -6.58 16 17 S 0.26 7.36 23.02 -56.49 -1.30 6.06 16 18 C -0.20 -5.69 10.97 66.64 0.73 -4.96 16 19 C -0.09 -3.17 6.39 22.68 0.14 -3.02 16 20 Br -0.02 -0.69 33.08 -20.37 -0.67 -1.37 16 21 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 23 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.08 2.90 8.11 -2.39 -0.02 2.88 16 25 H 0.07 2.70 7.36 -2.39 -0.02 2.68 16 26 H 0.02 0.99 6.68 -2.38 -0.02 0.97 16 27 H 0.02 0.98 8.07 -2.39 -0.02 0.96 16 28 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 29 H 0.18 7.59 5.34 -2.91 -0.02 7.57 16 30 H 0.21 4.15 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -58.21 293.56 3.68 -54.54 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 1.16 Total: 8.78 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: 4.29 Total: -6.25 kcal Atomic # 7 Polarization: -73.70 SS G_CDS: -1.75 Total: -75.45 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.07 Total: -27.24 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.93 kcal Atomic # 16 Polarization: 7.36 SS G_CDS: -1.30 Total: 6.06 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -0.67 Total: -1.37 kcal Total: -58.21 3.68 -54.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285093829.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.940 kcal (2) G-P(sol) polarization free energy of solvation -58.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds