Wall clock time and date at job start Tue Mar 31 2020 11:28:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 N 1.46506 * 109.46972 * 2 1
4 4 C 1.46497 * 119.99768 * 85.34784 * 3 2 1
5 5 C 1.50696 * 109.46980 * 90.00082 * 4 3 2
6 6 H 1.07994 * 120.00550 * 0.02562 * 5 4 3
7 7 C 1.37886 * 119.99547 * 179.97438 * 5 4 3
8 8 N 1.31513 * 120.00242 * 359.97438 * 7 5 4
9 9 Si 1.86802 * 119.99498 * 180.02562 * 7 5 4
10 10 H 1.48501 * 109.47496 * 359.97438 * 9 7 5
11 11 H 1.48503 * 109.47165 * 120.00159 * 9 7 5
12 12 H 1.48504 * 109.47040 * 239.99927 * 9 7 5
13 13 C 1.34774 * 119.99801 * 265.34831 * 3 2 1
14 14 O 1.21640 * 120.00300 * 5.25030 * 13 3 2
15 15 C 1.47169 * 119.99591 * 185.25180 * 13 3 2
16 16 C 1.36030 * 123.46534 * 52.65504 * 15 13 3
17 17 S 1.70448 * 110.82963 * 179.97438 * 16 15 13
18 18 C 1.75507 * 92.45272 * 359.97438 * 17 16 15
19 19 C 1.32826 * 110.57996 * 359.75662 * 18 17 16
20 20 Br 1.89096 * 123.46771 * 180.21685 * 19 18 17
21 21 H 1.09001 * 109.47687 * 59.99880 * 1 2 3
22 22 H 1.09007 * 109.47158 * 180.02562 * 1 2 3
23 23 H 1.09001 * 109.47122 * 299.99660 * 1 2 3
24 24 H 1.08996 * 109.47229 * 120.00182 * 2 1 3
25 25 H 1.09001 * 109.47122 * 240.00340 * 2 1 3
26 26 H 1.09007 * 109.47215 * 210.00133 * 4 3 2
27 27 H 1.09000 * 109.47304 * 329.99893 * 4 3 2
28 28 H 0.96998 * 119.99753 * 180.02562 * 8 7 5
29 29 H 1.07995 * 124.58601 * 359.95279 * 16 15 13
30 30 H 1.08004 * 124.70850 * 180.02562 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.1654 2.1061 1.2646
5 6 3.5510 1.8827 1.8133
6 1 4.2521 1.2631 1.2740
7 6 3.9240 2.4702 3.0037
8 7 3.0708 3.2259 3.6598
9 14 5.6418 2.1938 3.6836
10 1 6.4027 1.3116 2.7627
11 1 6.3400 3.4983 3.8099
12 1 5.5481 1.5512 5.0191
13 6 2.3321 1.9850 -1.1634
14 8 2.1205 1.4188 -2.2189
15 6 2.9310 3.3294 -1.1565
16 6 4.0363 3.6545 -0.4334
17 16 4.4506 5.2919 -0.6626
18 6 3.1070 5.5563 -1.7604
19 6 2.4093 4.4377 -1.9224
20 35 0.8862 4.3106 -3.0359
21 1 -0.3634 0.5138 -0.8899
22 1 -0.3634 -1.0277 0.0005
23 1 -0.3633 0.5138 0.8900
24 1 1.8933 -0.5138 0.8899
25 1 1.8933 -0.5138 -0.8900
26 1 2.0099 3.1713 1.0930
27 1 1.4281 1.7420 1.9800
28 1 3.3334 3.6395 4.4970
29 1 4.5779 2.9681 0.2006
30 1 2.8815 6.4968 -2.2411
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000285093829.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:28:09
Heat of formation + Delta-G solvation = -18.595414 kcal
Electronic energy + Delta-G solvation = -16995.458439 eV
Core-core repulsion = 14156.125413 eV
Total energy + Delta-G solvation = -2839.333026 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 316.983 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.97671 -37.97019 -36.92060 -34.73895 -32.70554 -31.73288 -29.95341 -29.05232
-25.95058 -25.01777 -23.87916 -21.37915 -19.61639 -18.74422 -18.38957 -17.84542
-17.04687 -16.34505 -16.09792 -15.33446 -14.65116 -14.42472 -14.40459 -14.19820
-13.98758 -13.60297 -13.34827 -13.15765 -13.08934 -12.68868 -12.63374 -12.23015
-12.08862 -11.84279 -11.73514 -11.66061 -11.21768 -10.78928 -10.59412 -9.81689
-9.48576 -9.25653 -8.19689 -6.32910 -0.07583 0.16121 0.74207 0.92852
1.33080 1.39838 1.45357 1.53624 1.97295 2.31780 2.50099 3.10113
3.72908 3.93702 4.24981 4.39345 4.54342 4.55627 4.57237 4.80909
4.91110 4.97826 5.06310 5.11343 5.18008 5.32419 5.66050 5.85847
6.05358 6.52616 6.79405 7.26353 7.38771 8.86099
Molecular weight = 316.98amu
Principal moments of inertia in cm(-1)
A = 0.015696 B = 0.006829 C = 0.005226
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1783.410802 B = 4099.344518 C = 5356.813722
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.110 3.890
3 N -0.593 5.593
4 C 0.256 3.744
5 C -0.538 4.538
6 H 0.058 0.942
7 C 0.031 3.969
8 N -0.911 5.911
9 Si 0.943 3.057
10 H -0.267 1.267
11 H -0.272 1.272
12 H -0.281 1.281
13 C 0.573 3.427
14 O -0.575 6.575
15 C -0.165 4.165
16 C -0.188 4.188
17 S 0.258 5.742
18 C -0.203 4.203
19 C -0.090 4.090
20 Br -0.021 7.021
21 H 0.042 0.958
22 H 0.089 0.911
23 H 0.049 0.951
24 H 0.080 0.920
25 H 0.072 0.928
26 H 0.019 0.981
27 H 0.019 0.981
28 H 0.268 0.732
29 H 0.183 0.817
30 H 0.207 0.793
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.535 4.931 -8.523 9.862
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.013 4.013
3 N -0.323 5.323
4 C 0.136 3.864
5 C -0.576 4.576
6 H 0.076 0.924
7 C -0.170 4.170
8 N -0.550 5.550
9 Si 0.768 3.232
10 H -0.191 1.191
11 H -0.198 1.198
12 H -0.207 1.207
13 C 0.360 3.640
14 O -0.458 6.458
15 C -0.182 4.182
16 C -0.326 4.326
17 S 0.523 5.477
18 C -0.341 4.341
19 C -0.182 4.182
20 Br 0.063 6.937
21 H 0.061 0.939
22 H 0.108 0.892
23 H 0.068 0.932
24 H 0.099 0.901
25 H 0.091 0.909
26 H 0.037 0.963
27 H 0.037 0.963
28 H 0.078 0.922
29 H 0.200 0.800
30 H 0.223 0.777
Dipole moment (debyes) X Y Z Total
from point charges -0.097 5.596 -8.717 10.359
hybrid contribution -0.176 -1.170 0.535 1.299
sum -0.274 4.425 -8.182 9.306
Atomic orbital electron populations
1.22009 0.94906 1.03024 1.01125 1.21444 0.95184 0.82084 1.02541
1.48191 1.62451 1.14428 1.07211 1.19040 0.96368 0.91466 0.79560
1.21556 0.98577 1.30912 1.06596 0.92399 1.25549 1.00529 0.94455
0.96498 1.70021 1.36517 1.31958 1.16459 0.85732 0.80445 0.78483
0.78560 1.19112 1.19756 1.20716 1.17799 0.77471 0.85231 0.83506
1.90679 1.56677 1.66878 1.31522 1.19855 0.99848 0.95064 1.03438
1.26303 1.01540 1.03768 1.00995 1.82651 1.25346 1.00875 1.38834
1.25826 1.00741 1.02158 1.05378 1.21600 0.98819 0.95025 1.02783
1.96602 1.34670 1.98927 1.63542 0.93897 0.89203 0.93158 0.90144
0.90946 0.96272 0.96266 0.92232 0.80016 0.77654
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.92 10.24 71.98 0.74 -4.18 16
2 C 0.11 4.10 6.14 86.38 0.53 4.63 16
3 N -0.59 -25.86 2.46 -830.32 -2.04 -27.90 16
4 C 0.26 12.25 4.74 85.63 0.41 12.66 16
5 C -0.54 -26.29 6.43 25.60 0.16 -26.13 16
6 H 0.06 2.86 7.47 -2.91 -0.02 2.84 16
7 C 0.03 1.55 5.46 84.66 0.46 2.01 16
8 N -0.91 -47.84 13.29 21.45 0.28 -47.55 16
9 Si 0.94 38.91 29.54 68.60 2.03 40.93 16
10 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16
11 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16
12 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16
13 C 0.57 25.53 6.98 86.59 0.60 26.13 16
14 O -0.58 -27.17 16.19 -4.16 -0.07 -27.24 16
15 C -0.17 -6.72 4.61 -19.86 -0.09 -6.82 16
16 C -0.19 -7.17 8.89 67.31 0.60 -6.58 16
17 S 0.26 7.36 23.02 -56.49 -1.30 6.06 16
18 C -0.20 -5.69 10.97 66.64 0.73 -4.96 16
19 C -0.09 -3.17 6.39 22.68 0.14 -3.02 16
20 Br -0.02 -0.69 33.08 -20.37 -0.67 -1.37 16
21 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16
22 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16
23 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16
24 H 0.08 2.90 8.11 -2.39 -0.02 2.88 16
25 H 0.07 2.70 7.36 -2.39 -0.02 2.68 16
26 H 0.02 0.99 6.68 -2.38 -0.02 0.97 16
27 H 0.02 0.98 8.07 -2.39 -0.02 0.96 16
28 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16
29 H 0.18 7.59 5.34 -2.91 -0.02 7.57 16
30 H 0.21 4.15 8.06 -2.91 -0.02 4.12 16
Total: -1.00 -58.21 293.56 3.68 -54.54
By element:
Atomic # 1 Polarization: 7.62 SS G_CDS: 1.16 Total: 8.78 kcal
Atomic # 6 Polarization: -10.54 SS G_CDS: 4.29 Total: -6.25 kcal
Atomic # 7 Polarization: -73.70 SS G_CDS: -1.75 Total: -75.45 kcal
Atomic # 8 Polarization: -27.17 SS G_CDS: -0.07 Total: -27.24 kcal
Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.93 kcal
Atomic # 16 Polarization: 7.36 SS G_CDS: -1.30 Total: 6.06 kcal
Atomic # 35 Polarization: -0.69 SS G_CDS: -0.67 Total: -1.37 kcal
Total: -58.21 3.68 -54.54 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000285093829.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.940 kcal
(2) G-P(sol) polarization free energy of solvation -58.213 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.272 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.536 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.595 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds