Wall clock time and date at job start Tue Mar 31 2020 11:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99682 * 2 1 4 4 H 1.48499 * 109.47136 * 270.00114 * 3 2 1 5 5 H 1.48499 * 109.47548 * 29.99893 * 3 2 1 6 6 H 1.48499 * 109.47078 * 150.00403 * 3 2 1 7 7 C 1.37875 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21633 * 120.00238 * 359.72097 * 13 12 11 15 15 C 1.47169 * 119.99709 * 179.72413 * 13 12 11 16 16 C 1.36031 * 123.46615 * 0.02562 * 15 13 12 17 17 S 1.70437 * 110.83267 * 179.97438 * 16 15 13 18 18 C 1.75502 * 92.45271 * 0.02562 * 17 16 15 19 19 C 1.32830 * 110.57888 * 359.74869 * 18 17 16 20 20 Br 1.89098 * 123.46812 * 180.21666 * 19 18 17 21 21 H 0.97000 * 120.00572 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 23 23 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 24 24 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 25 25 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 26 26 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 27 27 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 28 28 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 29 29 H 1.08011 * 124.58470 * 359.96152 * 16 15 13 30 30 H 1.08004 * 124.71462 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 7 2.4325 -6.1006 -0.0024 13 6 1.9833 -7.3712 -0.0086 14 8 0.7874 -7.5936 -0.0087 15 6 2.9397 -8.4898 -0.0151 16 6 4.2897 -8.3224 -0.0148 17 16 5.0872 -9.8287 -0.0226 18 6 3.5727 -10.7155 -0.0272 19 6 2.5414 -9.8784 -0.0174 20 35 0.7376 -10.4459 -0.0125 21 1 -0.4851 0.8400 0.0004 22 1 0.6248 -2.5563 -0.8919 23 1 0.6241 -2.5575 0.8881 24 1 2.8714 -3.6047 0.8890 25 1 2.8727 -3.6038 -0.8910 26 1 0.8541 -5.0447 -0.8923 27 1 0.8534 -5.0450 0.8877 28 1 3.3862 -5.9232 -0.0026 29 1 4.7887 -7.3645 -0.0104 30 1 3.4905 -11.7924 -0.0324 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285217179.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:37 Heat of formation + Delta-G solvation = -13.680020 kcal Electronic energy + Delta-G solvation = -15532.379933 eV Core-core repulsion = 12693.260055 eV Total energy + Delta-G solvation = -2839.119878 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.82122 -37.21677 -35.38641 -33.38967 -31.84894 -30.95278 -29.46741 -26.82847 -25.00119 -23.13830 -21.14537 -20.62909 -19.03052 -18.35841 -17.13175 -16.39289 -15.38404 -15.27782 -14.66917 -14.45757 -14.21152 -13.54729 -13.37324 -13.22694 -12.87563 -12.29407 -11.84382 -11.71137 -11.66757 -11.00348 -10.91520 -10.75537 -10.62727 -10.47276 -9.88436 -9.63538 -9.30493 -9.28838 -9.12394 -8.87202 -8.63406 -8.38229 -6.02716 -4.06023 0.36076 0.80765 1.29319 1.47976 2.01050 3.29891 3.30307 3.33563 3.36624 3.39402 4.27797 4.43317 4.82553 4.91917 5.04485 5.33054 5.46127 5.49262 5.74495 5.76483 6.14611 6.44663 6.57926 6.80571 6.98091 7.62322 7.65670 7.74909 7.95819 8.33297 8.37858 9.00591 9.58229 11.08554 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.025702 B = 0.002783 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.133635 B =10058.039812 C =11121.415356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.118 3.882 12 N -0.719 5.719 13 C 0.562 3.438 14 O -0.515 6.515 15 C -0.131 4.131 16 C -0.210 4.210 17 S 0.220 5.780 18 C -0.210 4.210 19 C -0.064 4.064 20 Br 0.005 6.995 21 H 0.261 0.739 22 H 0.019 0.981 23 H 0.019 0.981 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.395 0.605 29 H 0.179 0.821 30 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.113 -25.663 -0.045 27.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.004 4.004 12 N -0.370 5.370 13 C 0.345 3.655 14 O -0.392 6.392 15 C -0.149 4.149 16 C -0.349 4.349 17 S 0.485 5.515 18 C -0.348 4.348 19 C -0.156 4.156 20 Br 0.090 6.910 21 H 0.071 0.929 22 H 0.038 0.962 23 H 0.038 0.962 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.229 0.771 29 H 0.196 0.804 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 9.909 -26.319 -0.038 28.123 hybrid contribution -0.132 1.712 -0.012 1.717 sum 9.777 -24.607 -0.050 26.478 Atomic orbital electron populations 1.69962 1.06061 1.26716 1.50483 1.25029 0.94856 0.99305 0.95264 0.86582 0.79795 0.83441 0.78097 1.20655 1.21195 1.19898 1.21196 0.92969 0.90945 1.51026 0.92669 1.19029 0.93840 0.90795 0.97721 1.21897 0.99812 0.93350 1.00833 1.21682 0.91754 0.84722 1.02261 1.46065 1.10713 1.05569 1.74653 1.17487 0.87812 0.82376 0.77797 1.90885 1.15346 1.84223 1.48709 1.20124 0.92927 0.93321 1.08560 1.25711 0.97519 1.05159 1.06512 1.83102 1.06507 0.93513 1.68376 1.25569 0.95195 1.04299 1.09763 1.21688 0.93619 0.93075 1.07177 1.96780 1.08735 1.88214 1.97310 0.92901 0.96223 0.96216 0.92736 0.92742 0.91515 0.91495 0.77118 0.80395 0.80425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.33 5.27 -26.73 -0.14 -2.48 16 11 C 0.12 2.07 5.67 -4.04 -0.02 2.05 16 12 N -0.72 -10.39 5.52 -61.46 -0.34 -10.73 16 13 C 0.56 8.71 7.79 -12.63 -0.10 8.61 16 14 O -0.52 -9.70 14.68 5.25 0.08 -9.62 16 15 C -0.13 -1.61 5.98 -104.62 -0.63 -2.24 16 16 C -0.21 -1.85 10.38 29.94 0.31 -1.54 16 17 S 0.22 1.46 23.02 -107.50 -2.47 -1.02 16 18 C -0.21 -1.76 10.97 28.87 0.32 -1.44 16 19 C -0.06 -0.75 6.39 -38.99 -0.25 -0.99 16 20 Br 0.01 0.07 31.69 -68.01 -2.16 -2.09 16 21 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 22 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 27 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.39 4.49 6.97 -40.82 -0.28 4.20 16 29 H 0.18 1.15 7.01 -52.48 -0.37 0.78 16 30 H 0.18 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 298.00 15.07 4.49 4.49 Total: -1.00 -32.51 298.00 -8.90 -41.41 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -3.15 Total: -1.89 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -1.06 Total: -10.89 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.40 Total: -36.77 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.08 Total: -9.62 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.47 Total: -1.02 kcal Atomic # 35 Polarization: 0.07 SS G_CDS: -2.16 Total: -2.09 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.51 -8.90 -41.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285217179.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.728 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds