Wall clock time and date at job start Tue Mar 31 2020 11:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38448 * 122.55360 * 2 1 4 4 C 1.33359 * 114.92788 * 179.97438 * 3 2 1 5 5 C 1.50708 * 125.19266 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.46904 * 339.99736 * 5 4 3 7 7 C 1.53003 * 109.46876 * 99.99868 * 5 4 3 8 8 N 1.46903 * 109.46830 * 219.99951 * 5 4 3 9 9 C 1.46898 * 110.99673 * 155.00071 * 8 5 4 10 10 C 1.53006 * 109.47006 * 179.97438 * 9 8 5 11 11 C 1.50698 * 109.47184 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99819 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00046 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99944 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99979 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46926 * 60.00512 * 15 13 11 17 17 H 1.48506 * 109.46961 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47227 * 300.00303 * 15 13 11 19 19 S 1.75888 * 109.61511 * 0.26081 * 4 3 2 20 20 C 1.33478 * 122.55043 * 179.97438 * 2 1 3 21 21 Br 1.89105 * 125.21008 * 0.02784 * 20 2 1 22 22 H 1.09000 * 109.46889 * 90.00163 * 1 2 3 23 23 H 1.08997 * 109.47633 * 210.00077 * 1 2 3 24 24 H 1.08999 * 109.46971 * 330.00711 * 1 2 3 25 25 H 1.07996 * 122.53728 * 359.94593 * 3 2 1 26 26 H 1.08996 * 109.46579 * 179.97438 * 7 5 4 27 27 H 1.08994 * 109.47006 * 299.99855 * 7 5 4 28 28 H 1.08998 * 109.47007 * 59.99936 * 7 5 4 29 29 H 1.00895 * 111.00497 * 31.03993 * 8 5 4 30 30 H 1.09001 * 109.47062 * 59.99745 * 9 8 5 31 31 H 1.08993 * 109.47084 * 299.99192 * 9 8 5 32 32 H 1.09001 * 109.46801 * 300.00064 * 10 9 8 33 33 H 1.09001 * 109.46998 * 59.99660 * 10 9 8 34 34 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2520 1.1670 0.0000 4 6 3.5738 0.9900 0.0005 5 6 4.5981 2.0955 0.0001 6 1 4.1368 3.0180 -0.3522 7 6 5.1280 2.3002 1.4208 8 7 5.7094 1.7328 -0.8896 9 6 6.3982 2.9313 -1.3869 10 6 7.5470 2.5142 -2.3074 11 6 8.2532 3.7437 -2.8180 12 1 7.9165 4.7244 -2.5159 13 6 9.3296 3.6164 -3.6701 14 7 9.7399 2.4221 -4.0376 15 14 10.2054 5.1404 -4.3025 16 1 10.7455 5.9129 -3.1550 17 1 11.3211 4.7355 -5.1951 18 1 9.2463 5.9841 -5.0597 19 16 3.9392 -0.7305 -0.0064 20 6 2.2252 -1.1251 0.0005 21 35 1.5095 -2.8755 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5137 25 1 1.7972 2.1465 -0.0009 26 1 5.8691 3.0994 1.4203 27 1 4.3034 2.5693 2.0808 28 1 5.5892 1.3776 1.7730 29 1 5.3882 1.1572 -1.6534 30 1 6.7952 3.4979 -0.5446 31 1 5.6940 3.5509 -1.9421 32 1 8.2511 1.8947 -1.7518 33 1 7.1503 1.9473 -3.1496 34 1 10.4969 2.3327 -4.6373 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285854688.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:47 Heat of formation + Delta-G solvation = 14.764165 kcal Electronic energy + Delta-G solvation = -15939.065069 eV Core-core repulsion = 13237.011718 eV Total energy + Delta-G solvation = -2702.053351 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.79244 -36.68514 -33.52317 -32.15622 -31.11774 -29.71437 -28.07926 -26.90234 -24.57627 -23.06486 -20.72033 -20.60912 -18.81777 -17.36349 -16.27626 -15.60741 -15.15711 -14.51744 -14.44807 -13.94059 -13.74250 -13.31073 -12.96895 -12.53962 -12.41960 -12.28073 -12.17622 -12.03404 -11.60185 -11.35740 -11.10539 -10.94684 -10.87275 -10.73930 -10.56032 -10.35229 -10.00778 -9.43886 -9.18876 -8.59103 -8.42236 -8.36920 -7.98601 -6.00909 -4.03968 0.68305 1.01149 1.73029 1.89292 2.42955 3.32566 3.37148 3.39188 4.34819 4.48188 4.70962 4.98818 5.03326 5.25359 5.34975 5.38930 5.39859 5.45330 5.69839 5.80033 5.91876 5.99935 6.09394 6.21588 6.25769 6.32521 6.40431 6.93187 7.36515 7.67073 7.74298 7.87615 8.04640 8.40510 9.02874 9.59893 11.10421 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.028275 B = 0.002762 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.043301 B =10135.070232 C =10621.571838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.057 4.057 3 C -0.145 4.145 4 C -0.153 4.153 5 C 0.147 3.853 6 H 0.061 0.939 7 C -0.135 4.135 8 N -0.686 5.686 9 C 0.066 3.934 10 C 0.026 3.974 11 C -0.524 4.524 12 H 0.054 0.946 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 S 0.200 5.800 20 C -0.232 4.232 21 Br -0.001 7.001 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.144 0.856 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.339 0.661 30 H 0.062 0.938 31 H 0.018 0.982 32 H 0.026 0.974 33 H 0.014 0.986 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.679 -9.056 10.897 25.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.073 4.073 3 C -0.176 4.176 4 C -0.273 4.273 5 C 0.036 3.964 6 H 0.079 0.921 7 C -0.193 4.193 8 N -0.319 5.319 9 C -0.062 4.062 10 C -0.012 4.012 11 C -0.562 4.562 12 H 0.072 0.928 13 C -0.143 4.143 14 N -0.531 5.531 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 S 0.466 5.534 20 C -0.428 4.428 21 Br 0.083 6.917 22 H 0.094 0.906 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.162 0.838 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.157 0.843 30 H 0.080 0.920 31 H 0.036 0.964 32 H 0.044 0.956 33 H 0.032 0.968 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.981 -10.778 11.294 24.577 hybrid contribution -1.232 2.342 -1.096 2.864 sum -20.213 -8.436 10.198 24.161 Atomic orbital electron populations 1.20657 0.89400 1.03195 1.02851 1.18806 0.97642 0.90782 1.00079 1.19857 0.92084 0.99044 1.06585 1.25030 0.97956 0.98445 1.05845 1.20131 0.88214 0.92101 0.95999 0.92143 1.21807 1.00711 1.02865 0.93927 1.60823 1.26045 1.21667 1.23327 1.22236 0.96465 0.89334 0.98122 1.19062 0.91893 0.96840 0.93359 1.21119 1.14168 0.92754 1.28199 0.92797 1.24999 0.97084 0.95884 0.96335 1.69962 1.26544 1.21896 1.34738 0.86644 0.79222 0.83230 0.78807 1.20212 1.21253 1.20288 1.84715 0.99526 0.98436 1.70772 1.26058 1.00612 0.94992 1.21136 1.96633 1.84251 1.12905 1.97930 0.90620 0.91020 0.91030 0.83836 0.91543 0.92744 0.91874 0.84296 0.91990 0.96373 0.95559 0.96792 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 9.85 36.01 0.35 -0.51 16 2 C -0.06 -0.63 5.81 -106.21 -0.62 -1.25 16 3 C -0.14 -1.66 9.83 -41.21 -0.41 -2.07 16 4 C -0.15 -1.98 5.15 -36.01 -0.19 -2.17 16 5 C 0.15 2.08 3.05 -68.86 -0.21 1.87 16 6 H 0.06 0.84 7.78 -51.93 -0.40 0.44 16 7 C -0.13 -1.76 9.40 37.16 0.35 -1.41 16 8 N -0.69 -11.94 6.10 -107.94 -0.66 -12.60 16 9 C 0.07 1.36 5.42 -3.82 -0.02 1.34 16 10 C 0.03 0.67 5.23 -27.88 -0.15 0.52 16 11 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 12 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 15 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 S 0.20 2.60 22.87 -107.50 -2.46 0.14 16 20 C -0.23 -2.77 6.95 29.07 0.20 -2.57 16 21 Br 0.00 -0.01 32.86 -68.01 -2.24 -2.24 16 22 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.07 0.58 7.26 -51.93 -0.38 0.20 16 24 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 25 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 26 H 0.07 0.90 7.45 -51.93 -0.39 0.52 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.34 5.92 8.14 -39.29 -0.32 5.60 16 30 H 0.06 1.26 7.44 -51.93 -0.39 0.87 16 31 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 320.31 15.07 4.83 4.83 Total: -1.00 -29.45 320.31 -10.69 -40.14 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -4.79 Total: -0.99 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -1.09 Total: -19.73 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.08 Total: -38.72 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -2.46 Total: 0.14 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -2.24 Total: -2.24 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.45 -10.69 -40.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285854688.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.908 kcal (2) G-P(sol) polarization free energy of solvation -29.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds