Wall clock time and date at job start Tue Mar 31 2020 11:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99955 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99841 * 3 2 1 5 5 H 1.48505 * 109.47256 * 29.99975 * 3 2 1 6 6 H 1.48499 * 109.47218 * 149.99981 * 3 2 1 7 7 C 1.37875 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99985 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00239 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47500 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47168 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00363 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99864 * 179.72721 * 13 11 10 15 15 C 1.50698 * 109.47082 * 180.02562 * 14 13 11 16 16 S 1.75891 * 125.20116 * 270.02423 * 15 14 13 17 17 C 1.75878 * 90.98131 * 179.97438 * 16 15 14 18 18 C 1.33397 * 109.60563 * 359.97438 * 17 16 15 19 19 C 1.33434 * 125.20489 * 89.71398 * 15 14 13 20 20 Br 1.89095 * 122.54776 * 0.04275 * 19 15 14 21 21 H 0.97000 * 120.00297 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46737 * 59.99926 * 9 7 2 23 23 H 1.09002 * 109.46890 * 300.00037 * 9 7 2 24 24 H 1.08998 * 109.46837 * 60.00023 * 10 9 7 25 25 H 1.09002 * 109.46926 * 299.99827 * 10 9 7 26 26 H 0.97000 * 119.99339 * 0.02562 * 13 11 10 27 27 H 1.09007 * 109.47196 * 299.99538 * 14 13 11 28 28 H 1.09006 * 109.47678 * 59.99732 * 14 13 11 29 29 H 1.07999 * 125.19910 * 179.97438 * 17 16 15 30 30 H 1.07997 * 122.54849 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0001 11 6 5.5285 -2.6365 0.0001 12 8 6.1350 -1.5862 -0.0004 13 7 6.2024 -3.8038 0.0008 14 6 7.6674 -3.8037 -0.0052 15 6 8.1697 -5.2245 -0.0038 16 16 8.5131 -6.1771 1.4344 17 6 8.9935 -7.5508 0.4467 18 6 8.8758 -7.2367 -0.8444 19 6 8.4166 -5.9542 -1.0933 20 35 8.1637 -5.2861 -2.8441 21 1 -0.4850 0.8400 0.0004 22 1 3.8751 -0.6796 0.8895 23 1 3.8745 -0.6808 -0.8905 24 1 3.6579 -3.1506 -0.8896 25 1 3.6586 -3.1502 0.8904 26 1 5.7174 -4.6438 0.0008 27 1 8.0271 -3.2925 -0.8983 28 1 8.0344 -3.2873 0.8818 29 1 9.3321 -8.5031 0.8273 30 1 9.1175 -7.9309 -1.6356 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292301459.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:53 Heat of formation + Delta-G solvation = -10.952391 kcal Electronic energy + Delta-G solvation = -15662.537879 eV Core-core repulsion = 12823.536280 eV Total energy + Delta-G solvation = -2839.001599 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.44969 -38.37124 -34.80366 -33.46432 -31.73027 -31.28765 -30.13392 -26.79848 -25.28347 -23.31986 -21.23379 -19.86270 -19.43310 -17.93951 -17.05821 -16.12211 -15.95785 -15.44550 -15.21349 -14.09908 -14.00191 -13.82064 -13.29514 -13.10319 -12.81443 -12.61576 -12.51299 -11.98932 -11.40712 -11.27022 -11.06300 -10.94393 -10.48296 -10.15577 -10.03632 -9.78796 -9.52833 -9.17516 -9.01132 -8.94940 -8.80680 -8.49127 -6.01469 -4.00160 0.32653 0.74043 1.31790 1.88653 1.98604 3.10508 3.39405 3.45785 3.52523 3.56841 4.20304 4.52474 4.61778 4.78049 5.23255 5.32344 5.34086 5.40982 5.57237 5.64319 5.76089 6.09082 6.11382 6.49109 6.70303 7.37953 7.45034 7.71337 7.80690 8.50823 8.62567 9.01645 9.61599 11.11377 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.022534 B = 0.003366 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.295996 B = 8315.507313 C = 8940.242025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.121 4.121 11 C 0.513 3.487 12 O -0.538 6.538 13 N -0.736 5.736 14 C 0.185 3.815 15 C -0.171 4.171 16 S 0.162 5.838 17 C -0.206 4.206 18 C -0.119 4.119 19 C -0.092 4.092 20 Br -0.018 7.018 21 H 0.263 0.737 22 H 0.024 0.976 23 H 0.019 0.981 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.401 0.599 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.174 0.826 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.918 -18.981 -1.610 29.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.161 4.161 11 C 0.302 3.698 12 O -0.414 6.414 13 N -0.391 5.391 14 C 0.060 3.940 15 C -0.292 4.292 16 S 0.426 5.574 17 C -0.343 4.343 18 C -0.150 4.150 19 C -0.185 4.185 20 Br 0.066 6.934 21 H 0.073 0.927 22 H 0.042 0.958 23 H 0.038 0.962 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.235 0.765 27 H 0.109 0.891 28 H 0.099 0.901 29 H 0.191 0.809 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 22.035 -17.577 -0.678 28.194 hybrid contribution 0.358 -0.163 -1.164 1.228 sum 22.392 -17.739 -1.841 28.627 Atomic orbital electron populations 1.69912 1.06297 1.26954 1.51116 1.24969 0.94705 0.99225 0.94342 0.86798 0.80618 0.83393 0.78754 1.20240 1.21461 1.18517 1.21113 0.89276 0.94567 1.51290 0.90930 1.19375 0.96411 0.90163 0.97694 1.21672 0.87606 1.03339 1.03459 1.21574 0.91580 0.82475 0.74156 1.90662 1.70724 1.31342 1.48631 1.46186 1.05155 1.09684 1.78031 1.19690 0.82113 0.88222 1.04007 1.24635 1.07789 1.01146 0.95597 1.84575 1.62078 1.03615 1.07122 1.25717 1.08539 1.03498 0.96543 1.19980 1.02549 0.95232 0.97241 1.20863 1.08618 0.96659 0.92384 1.96792 1.96100 1.86629 1.13924 0.92732 0.95796 0.96234 0.89483 0.89525 0.76534 0.89148 0.90145 0.80909 0.83241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 22.69 27.47 -169.99 -4.67 18.02 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 6 H -0.26 -6.71 6.54 56.52 0.37 -6.34 16 7 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16 8 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 9 C 0.00 0.04 3.33 -27.88 -0.09 -0.06 16 10 C -0.12 -2.34 5.64 -27.89 -0.16 -2.50 16 11 C 0.51 9.28 7.83 -10.98 -0.09 9.19 16 12 O -0.54 -11.81 15.98 5.56 0.09 -11.72 16 13 N -0.74 -9.93 5.55 -61.47 -0.34 -10.27 16 14 C 0.19 2.26 5.81 -5.20 -0.03 2.23 16 15 C -0.17 -1.71 5.88 -35.99 -0.21 -1.92 16 16 S 0.16 1.28 23.33 -107.50 -2.51 -1.22 16 17 C -0.21 -1.37 11.23 29.04 0.33 -1.04 16 18 C -0.12 -0.93 10.04 -41.19 -0.41 -1.34 16 19 C -0.09 -0.88 6.17 -41.17 -0.25 -1.14 16 20 Br -0.02 -0.19 32.71 -68.01 -2.22 -2.42 16 21 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 22 H 0.02 0.62 7.15 -51.93 -0.37 0.25 16 23 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 24 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 25 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 26 H 0.40 4.51 8.46 -40.82 -0.35 4.16 16 27 H 0.09 1.20 7.32 -51.93 -0.38 0.82 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 30 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 298.11 15.07 4.49 4.49 Total: -1.00 -33.44 298.11 -8.93 -42.36 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -3.19 Total: -1.88 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -1.35 Total: -10.01 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.43 Total: -37.63 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.67 Total: 18.02 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.51 Total: -1.22 kcal Atomic # 35 Polarization: -0.19 SS G_CDS: -2.22 Total: -2.42 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.44 -8.93 -42.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292301459.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.409 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds