Wall clock time and date at job start Tue Mar 31 2020 11:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99955 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99841 * 3 2 1 5 5 H 1.48505 * 109.47256 * 29.99975 * 3 2 1 6 6 H 1.48499 * 109.47218 * 149.99981 * 3 2 1 7 7 C 1.37875 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99985 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00239 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47500 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47168 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00363 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99864 * 179.72721 * 13 11 10 15 15 C 1.50698 * 109.47082 * 180.02562 * 14 13 11 16 16 S 1.75891 * 125.20116 * 270.02423 * 15 14 13 17 17 C 1.75878 * 90.98131 * 179.97438 * 16 15 14 18 18 C 1.33397 * 109.60563 * 359.97438 * 17 16 15 19 19 C 1.33434 * 125.20489 * 89.71398 * 15 14 13 20 20 Br 1.89095 * 122.54776 * 0.04275 * 19 15 14 21 21 H 0.97000 * 120.00297 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46737 * 59.99926 * 9 7 2 23 23 H 1.09002 * 109.46890 * 300.00037 * 9 7 2 24 24 H 1.08998 * 109.46837 * 60.00023 * 10 9 7 25 25 H 1.09002 * 109.46926 * 299.99827 * 10 9 7 26 26 H 0.97000 * 119.99339 * 0.02562 * 13 11 10 27 27 H 1.09007 * 109.47196 * 299.99538 * 14 13 11 28 28 H 1.09006 * 109.47678 * 59.99732 * 14 13 11 29 29 H 1.07999 * 125.19910 * 179.97438 * 17 16 15 30 30 H 1.07997 * 122.54849 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0001 11 6 5.5285 -2.6365 0.0001 12 8 6.1350 -1.5862 -0.0004 13 7 6.2024 -3.8038 0.0008 14 6 7.6674 -3.8037 -0.0052 15 6 8.1697 -5.2245 -0.0038 16 16 8.5131 -6.1771 1.4344 17 6 8.9935 -7.5508 0.4467 18 6 8.8758 -7.2367 -0.8444 19 6 8.4166 -5.9542 -1.0933 20 35 8.1637 -5.2861 -2.8441 21 1 -0.4850 0.8400 0.0004 22 1 3.8751 -0.6796 0.8895 23 1 3.8745 -0.6808 -0.8905 24 1 3.6579 -3.1506 -0.8896 25 1 3.6586 -3.1502 0.8904 26 1 5.7174 -4.6438 0.0008 27 1 8.0271 -3.2925 -0.8983 28 1 8.0344 -3.2873 0.8818 29 1 9.3321 -8.5031 0.8273 30 1 9.1175 -7.9309 -1.6356 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292301459.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:52 Heat of formation + Delta-G solvation = -33.196310 kcal Electronic energy + Delta-G solvation = -15663.502448 eV Core-core repulsion = 12823.536280 eV Total energy + Delta-G solvation = -2839.966168 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.78834 -39.16108 -36.01176 -35.49219 -33.38043 -32.36913 -31.14308 -28.30732 -26.51667 -24.13701 -23.00357 -21.30873 -20.17003 -19.29653 -18.53839 -17.51838 -17.02621 -16.66388 -16.29886 -16.20321 -15.11559 -14.93858 -14.60310 -14.39895 -14.17053 -13.84261 -13.53576 -13.38328 -13.00905 -12.83714 -12.10509 -11.96071 -11.90094 -11.78871 -11.75801 -11.39190 -11.25948 -10.92878 -10.77212 -10.17059 -9.84355 -9.45469 -8.30545 -6.33377 -0.34820 0.04802 0.73240 1.18359 1.34292 1.35459 1.36134 1.51175 1.66568 2.32226 2.36010 3.05288 3.41201 3.90752 4.01142 4.20287 4.40015 4.45447 4.52280 4.57559 4.77261 4.99012 5.00810 5.13326 5.27654 5.40079 5.45960 5.62029 6.24357 6.50368 6.73029 7.24733 7.31999 8.85164 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.022534 B = 0.003366 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.295996 B = 8315.507313 C = 8940.242025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.938 3.062 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.260 1.260 7 C -0.529 4.529 8 H 0.050 0.950 9 C 0.005 3.995 10 C -0.116 4.116 11 C 0.520 3.480 12 O -0.581 6.581 13 N -0.714 5.714 14 C 0.188 3.812 15 C -0.196 4.196 16 S 0.179 5.821 17 C -0.185 4.185 18 C -0.134 4.134 19 C -0.089 4.089 20 Br -0.034 7.034 21 H 0.267 0.733 22 H 0.012 0.988 23 H 0.009 0.991 24 H 0.102 0.898 25 H 0.104 0.896 26 H 0.414 0.586 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.206 0.794 30 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.604 -20.540 -1.156 31.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.184 4.184 3 Si 0.763 3.237 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.185 1.185 7 C -0.567 4.567 8 H 0.068 0.932 9 C -0.033 4.033 10 C -0.156 4.156 11 C 0.308 3.692 12 O -0.461 6.461 13 N -0.368 5.368 14 C 0.063 3.937 15 C -0.316 4.316 16 S 0.443 5.557 17 C -0.322 4.322 18 C -0.164 4.164 19 C -0.184 4.184 20 Br 0.050 6.950 21 H 0.076 0.924 22 H 0.030 0.970 23 H 0.027 0.973 24 H 0.120 0.880 25 H 0.122 0.878 26 H 0.250 0.750 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.223 0.777 30 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 23.731 -19.192 -0.222 30.521 hybrid contribution -0.147 0.159 -1.273 1.291 sum 23.584 -19.034 -1.494 30.343 Atomic orbital electron populations 1.70023 1.07791 1.28083 1.52567 1.25799 0.95486 1.02847 0.94281 0.85832 0.79285 0.79500 0.79123 1.19450 1.20359 1.18456 1.21432 0.91259 0.93712 1.50261 0.93170 1.19227 0.93915 0.93699 0.96464 1.21497 0.88942 1.00008 1.05116 1.21170 0.90963 0.82991 0.74030 1.90649 1.71268 1.33063 1.51083 1.45919 1.06118 1.08875 1.75860 1.19620 0.80662 0.90013 1.03387 1.24389 1.09810 1.00401 0.97028 1.84565 1.61520 1.03606 1.05986 1.26130 1.06300 1.03966 0.95780 1.20145 1.03231 0.94724 0.98322 1.21036 1.08386 0.97435 0.91507 1.96785 1.96132 1.86954 1.15101 0.92393 0.96993 0.97295 0.88012 0.87786 0.74958 0.90339 0.90351 0.77748 0.81636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.39 13.96 21.45 0.30 -59.09 16 2 C 0.01 0.81 5.47 84.65 0.46 1.27 16 3 Si 0.94 47.00 27.47 68.60 1.88 48.88 16 4 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.26 -12.93 6.54 99.48 0.65 -12.28 16 7 C -0.53 -30.63 9.66 25.60 0.25 -30.38 16 8 H 0.05 3.06 7.99 -2.91 -0.02 3.03 16 9 C 0.00 0.25 3.33 29.85 0.10 0.35 16 10 C -0.12 -4.38 5.64 29.85 0.17 -4.21 16 11 C 0.52 18.36 7.83 87.65 0.69 19.05 16 12 O -0.58 -25.44 15.98 -3.04 -0.05 -25.49 16 13 N -0.71 -18.36 5.55 -466.78 -2.59 -20.95 16 14 C 0.19 4.42 5.81 85.63 0.50 4.92 16 15 C -0.20 -3.57 5.88 24.60 0.14 -3.43 16 16 S 0.18 2.36 23.33 -56.49 -1.32 1.04 16 17 C -0.19 -1.77 11.23 66.72 0.75 -1.03 16 18 C -0.13 -1.70 10.04 21.23 0.21 -1.49 16 19 C -0.09 -1.55 6.17 21.24 0.13 -1.42 16 20 Br -0.03 -0.67 32.71 -20.37 -0.67 -1.34 16 21 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 22 H 0.01 0.61 7.15 -2.39 -0.02 0.59 16 23 H 0.01 0.45 7.53 -2.39 -0.02 0.43 16 24 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 25 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 26 H 0.41 8.52 8.46 -92.71 -0.78 7.73 16 27 H 0.08 2.06 7.32 -2.38 -0.02 2.04 16 28 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.21 0.63 8.06 -2.91 -0.02 0.60 16 30 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -72.13 298.11 1.29 -70.84 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: 0.33 Total: 2.47 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: 3.40 Total: -16.37 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -2.29 Total: -80.04 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.05 Total: -25.49 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 1.88 Total: 48.88 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -1.32 Total: 1.04 kcal Atomic # 35 Polarization: -0.67 SS G_CDS: -0.67 Total: -1.34 kcal Total: -72.13 1.29 -70.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292301459.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.647 kcal (2) G-P(sol) polarization free energy of solvation -72.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds