Wall clock time and date at job start Tue Mar 31 2020 11:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 119.99601 * 2 1 4 4 H 1.48508 * 109.46744 * 270.00013 * 3 2 1 5 5 H 1.48501 * 109.47447 * 30.00012 * 3 2 1 6 6 H 1.48499 * 109.46902 * 150.00353 * 3 2 1 7 7 C 1.37871 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.50700 * 109.46769 * 179.72341 * 14 13 11 16 16 C 1.33396 * 125.20053 * 90.00447 * 15 14 13 17 17 C 1.38467 * 114.91633 * 179.97438 * 16 15 14 18 18 Br 1.89098 * 122.54827 * 179.97438 * 17 16 15 19 19 C 1.33433 * 114.90224 * 359.97438 * 17 16 15 20 20 S 1.75881 * 109.59717 * 359.73768 * 19 17 16 21 21 H 0.96991 * 119.99897 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 23 23 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 24 24 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 25 25 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 26 26 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 27 27 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 28 28 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 29 29 H 1.08003 * 122.53785 * 0.02562 * 16 15 14 30 30 H 1.08005 * 125.19579 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1659 -6.1344 -0.0008 14 6 1.4334 -7.4031 -0.0075 15 6 2.4128 -8.5484 -0.0124 16 6 2.9117 -9.1382 1.0751 17 6 3.7968 -10.1728 0.8235 18 35 4.6317 -11.1564 2.2060 19 6 4.0160 -10.4230 -0.4687 20 16 3.0656 -9.3179 -1.4530 21 1 -0.4849 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8898 24 1 2.8721 -3.6043 0.8894 25 1 2.8721 -3.6043 -0.8905 26 1 3.1359 -6.1343 -0.0004 27 1 0.8061 -7.4652 0.8818 28 1 0.8074 -7.4565 -0.8982 29 1 2.6446 -8.8325 2.0759 30 1 4.6727 -11.1903 -0.8516 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292370716.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:43 Heat of formation + Delta-G solvation = -37.248682 kcal Electronic energy + Delta-G solvation = -15357.342273 eV Core-core repulsion = 12517.200381 eV Total energy + Delta-G solvation = -2840.141892 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.74740 -39.15260 -36.03992 -35.51107 -33.16244 -32.34387 -30.72707 -28.22745 -26.81844 -24.04867 -23.14867 -21.29006 -20.30286 -18.97029 -18.43952 -17.39143 -17.07182 -16.62953 -16.41742 -16.22247 -14.97996 -14.81745 -14.52054 -14.14303 -14.11333 -13.86459 -13.58857 -13.21618 -12.94349 -12.78485 -12.46800 -11.95870 -11.90267 -11.76901 -11.62958 -11.29501 -11.25941 -10.84904 -10.55846 -10.15627 -9.87958 -9.45383 -8.16987 -6.30824 -0.32482 0.10006 0.57032 1.24248 1.27294 1.43227 1.45731 1.56695 1.69726 2.34033 2.48023 3.16139 3.46559 3.99026 4.05889 4.16911 4.29733 4.50870 4.57494 4.62712 4.78739 4.95316 5.05769 5.09360 5.35648 5.52028 5.65244 5.87062 6.19027 6.55185 6.87841 7.30192 7.39498 8.95662 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.028050 B = 0.002365 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.970048 B =11838.449252 C =12276.470559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.973 3.027 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.255 1.255 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.041 3.959 10 C -0.119 4.119 11 C 0.515 3.485 12 O -0.585 6.585 13 N -0.717 5.717 14 C 0.193 3.807 15 C -0.204 4.204 16 C -0.098 4.098 17 C -0.120 4.120 18 Br -0.027 7.027 19 C -0.171 4.171 20 S 0.185 5.815 21 H 0.263 0.737 22 H -0.017 1.017 23 H -0.017 1.017 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.415 0.585 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.153 0.847 30 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.934 -28.053 0.789 31.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.179 1.179 7 C -0.581 4.581 8 H 0.094 0.906 9 C 0.004 3.996 10 C -0.159 4.159 11 C 0.303 3.697 12 O -0.465 6.465 13 N -0.371 5.371 14 C 0.069 3.931 15 C -0.323 4.323 16 C -0.130 4.130 17 C -0.212 4.212 18 Br 0.056 6.944 19 C -0.310 4.310 20 S 0.449 5.551 21 H 0.071 0.929 22 H 0.002 0.998 23 H 0.002 0.998 24 H 0.123 0.877 25 H 0.123 0.877 26 H 0.252 0.748 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.171 0.829 30 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 13.039 -28.113 -0.270 30.991 hybrid contribution 0.176 0.859 1.272 1.545 sum 13.215 -27.254 1.002 30.305 Atomic orbital electron populations 1.70177 1.08283 1.27787 1.51546 1.26131 0.95721 1.03922 0.94692 0.85331 0.78683 0.77783 0.78507 1.19720 1.21241 1.17913 1.21725 0.94012 0.91650 1.50675 0.90614 1.18696 0.93729 0.92397 0.94806 1.21642 0.99341 0.89963 1.04947 1.21321 0.87795 0.86500 0.74038 1.90670 1.16546 1.88287 1.50963 1.45999 1.10971 1.04139 1.75990 1.19551 0.91422 0.78917 1.03259 1.24282 1.06786 1.04158 0.97039 1.20090 0.97004 0.95344 1.00555 1.20739 1.04867 1.02009 0.93600 1.96742 1.78956 1.71541 1.47146 1.26137 1.04916 1.04945 0.94983 1.84567 1.37648 1.26050 1.06801 0.92872 0.99816 0.99849 0.87726 0.87663 0.74763 0.90072 0.90888 0.82931 0.78513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.48 13.29 21.45 0.28 -59.20 16 2 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 3 Si 0.97 44.19 29.54 68.60 2.03 46.21 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.54 -30.76 9.11 25.60 0.23 -30.52 16 8 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 9 C 0.04 2.29 4.26 29.85 0.13 2.41 16 10 C -0.12 -4.68 5.64 29.85 0.17 -4.51 16 11 C 0.51 19.27 7.83 87.66 0.69 19.96 16 12 O -0.59 -27.98 15.98 -3.04 -0.05 -28.03 16 13 N -0.72 -18.51 5.55 -466.79 -2.59 -21.10 16 14 C 0.19 4.44 6.16 85.63 0.53 4.96 16 15 C -0.20 -3.58 5.88 24.59 0.14 -3.44 16 16 C -0.10 -1.64 9.91 21.23 0.21 -1.43 16 17 C -0.12 -1.83 6.17 21.24 0.13 -1.70 16 18 Br -0.03 -0.40 33.87 -20.37 -0.69 -1.09 16 19 C -0.17 -2.13 11.05 66.73 0.74 -1.39 16 20 S 0.19 2.58 23.33 -56.49 -1.32 1.26 16 21 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 22 H -0.02 -1.04 8.10 -2.39 -0.02 -1.06 16 23 H -0.02 -1.06 8.10 -2.38 -0.02 -1.08 16 24 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 25 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 26 H 0.42 8.19 8.46 -92.71 -0.78 7.41 16 27 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 30 H 0.20 1.50 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -73.69 303.73 1.47 -72.21 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: 0.38 Total: 5.34 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: 3.43 Total: -15.62 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -2.30 Total: -80.29 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.05 Total: -28.03 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -1.32 Total: 1.26 kcal Atomic # 35 Polarization: -0.40 SS G_CDS: -0.69 Total: -1.09 kcal Total: -73.69 1.47 -72.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292370716.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.964 kcal (2) G-P(sol) polarization free energy of solvation -73.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds