Wall clock time and date at job start Tue Mar 31 2020 11:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31377 * 1 3 3 Si 1.86801 * 119.99654 * 2 1 4 4 H 1.48502 * 109.46942 * 269.99800 * 3 2 1 5 5 H 1.48499 * 109.47618 * 30.00402 * 3 2 1 6 6 H 1.48499 * 109.46925 * 150.00707 * 3 2 1 7 7 C 1.39026 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99859 * 160.11010 * 7 2 1 9 9 N 1.36896 * 120.00055 * 340.10802 * 7 2 1 10 10 C 1.34777 * 120.00172 * 318.01310 * 9 7 2 11 11 O 1.21615 * 119.99596 * 3.58915 * 10 9 7 12 12 C 1.47541 * 120.00197 * 183.59273 * 10 9 7 13 13 C 1.39768 * 120.12822 * 314.38711 * 12 10 9 14 14 C 1.37858 * 119.87080 * 180.02562 * 13 12 10 15 15 Cl 1.73602 * 119.93173 * 180.02562 * 14 13 12 16 16 C 1.38838 * 120.13827 * 0.27370 * 14 13 12 17 17 F 1.35097 * 119.86554 * 179.70231 * 16 14 13 18 18 C 1.38547 * 120.26219 * 359.45060 * 16 14 13 19 19 C 1.38028 * 120.12810 * 0.54892 * 18 16 14 20 20 Cl 1.73592 * 120.07316 * 179.74822 * 19 18 16 21 21 C 1.46498 * 119.99846 * 138.01006 * 9 7 2 22 22 C 1.53000 * 117.50187 * 3.63877 * 21 9 7 23 23 C 1.53001 * 60.00064 * 252.51090 * 22 21 9 24 24 H 0.97004 * 120.00599 * 5.04953 * 1 2 3 25 25 H 1.07997 * 120.06350 * 0.02562 * 13 12 10 26 26 H 1.08007 * 119.93664 * 180.27575 * 18 16 14 27 27 H 1.08998 * 115.54873 * 149.34350 * 21 9 7 28 28 H 1.09009 * 117.49717 * 359.97438 * 22 21 9 29 29 H 1.08998 * 117.50088 * 145.01650 * 22 21 9 30 30 H 1.09004 * 117.49507 * 252.50820 * 23 22 21 31 31 H 1.08997 * 117.50324 * 107.49211 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4952 2.0464 -1.4001 5 1 1.4452 2.6527 0.7001 6 1 3.5453 1.4402 0.6999 7 6 2.0089 -1.2040 -0.0005 8 1 3.0406 -1.2317 -0.3188 9 7 1.3857 -2.3544 0.4023 10 6 0.5800 -2.3415 1.4827 11 8 0.3549 -1.2955 2.0609 12 6 -0.0287 -3.5964 1.9641 13 6 -0.6191 -4.4822 1.0584 14 6 -1.1867 -5.6530 1.5141 15 17 -1.9199 -6.7548 0.3905 16 6 -1.1779 -5.9503 2.8702 17 9 -1.7411 -7.0964 3.3113 18 6 -0.5892 -5.0790 3.7722 19 6 -0.0176 -3.9037 3.3281 20 17 0.7138 -2.8099 4.4603 21 6 1.5944 -3.5994 -0.3410 22 6 2.5857 -3.5690 -1.5060 23 6 1.0833 -3.6561 -1.7820 24 1 -0.4851 0.8368 -0.0739 25 1 -0.6305 -4.2500 0.0038 26 1 -0.5814 -5.3177 4.8256 27 1 1.5388 -4.5142 0.2491 28 1 3.0823 -2.6224 -1.7197 29 1 3.1826 -4.4638 -1.6825 30 1 0.6918 -4.6083 -2.1401 31 1 0.5918 -2.7670 -2.1770 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293981493.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:29 Heat of formation + Delta-G solvation = -29.913119 kcal Electronic energy + Delta-G solvation = -22168.659592 eV Core-core repulsion = 18417.759468 eV Total energy + Delta-G solvation = -3750.900124 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 317.013 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.17046 -41.21043 -39.42885 -38.00497 -37.58942 -37.27830 -34.76340 -33.15202 -32.14462 -31.48414 -27.23473 -24.95718 -24.26771 -23.19944 -22.71257 -21.46717 -19.33696 -18.75947 -17.99953 -17.90376 -17.06206 -16.86858 -16.62259 -16.10164 -15.61018 -15.36244 -15.29058 -14.82483 -14.61074 -14.26662 -14.23077 -13.72410 -13.52876 -13.08052 -12.92741 -12.73890 -12.68840 -12.22100 -12.17743 -12.03137 -12.02143 -11.90538 -11.57723 -11.25240 -10.74768 -10.27368 -10.04702 -9.73363 -8.97268 -8.21602 -5.95532 -0.54398 -0.28205 0.72267 0.98734 1.38607 1.46524 1.53064 1.83264 2.31069 2.51501 2.78672 2.92494 3.09867 3.32386 3.42214 3.68140 3.86546 4.09845 4.11815 4.27203 4.29191 4.38455 4.57479 4.61414 4.84352 4.91474 5.03828 5.25418 5.31295 5.46345 5.54619 6.18392 6.97329 7.14655 7.62601 8.28109 8.85749 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.015338 B = 0.005790 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.137009 B = 4834.899924 C = 6050.617681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.027 3.973 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.354 4.354 8 H 0.088 0.912 9 N -0.423 5.423 10 C 0.495 3.505 11 O -0.551 6.551 12 C -0.104 4.104 13 C -0.048 4.048 14 C -0.070 4.070 15 Cl -0.030 7.030 16 C 0.130 3.870 17 F -0.114 7.114 18 C -0.125 4.125 19 C 0.014 3.986 20 Cl -0.040 7.040 21 C 0.038 3.962 22 C -0.163 4.163 23 C -0.185 4.185 24 H 0.260 0.740 25 H 0.157 0.843 26 H 0.186 0.814 27 H 0.126 0.874 28 H 0.086 0.914 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.534 -14.338 2.021 14.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.181 4.181 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.482 4.482 8 H 0.106 0.894 9 N -0.142 5.142 10 C 0.284 3.716 11 O -0.431 6.431 12 C -0.109 4.109 13 C -0.068 4.068 14 C -0.098 4.098 15 Cl 0.000 7.000 16 C 0.109 3.891 17 F -0.093 7.093 18 C -0.144 4.144 19 C -0.014 4.014 20 Cl -0.010 7.010 21 C -0.066 4.066 22 C -0.200 4.200 23 C -0.223 4.223 24 H 0.070 0.930 25 H 0.174 0.826 26 H 0.204 0.796 27 H 0.144 0.856 28 H 0.105 0.895 29 H 0.142 0.858 30 H 0.139 0.861 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.813 -13.710 2.387 13.940 hybrid contribution 0.006 1.068 -0.043 1.069 sum -0.807 -12.642 2.344 12.883 Atomic orbital electron populations 1.69940 1.07991 1.27786 1.43004 1.25973 0.95356 1.02312 0.94441 0.85367 0.78514 0.78683 0.78301 1.19037 1.22159 1.19186 1.19205 0.95857 0.85048 1.48041 0.89449 1.42845 1.42285 1.07235 1.21815 1.17906 0.84343 0.87321 0.82056 1.90657 1.61733 1.32647 1.58025 1.20264 1.01297 0.96602 0.92741 1.21233 0.94249 0.90207 1.01097 1.20859 1.04067 0.94977 0.89939 1.98388 1.80771 1.60840 1.60040 1.17124 0.97679 0.84340 0.89965 1.91569 1.82171 1.45915 1.89603 1.20996 0.99468 0.91728 1.02236 1.20776 0.98512 0.92560 0.89592 1.98404 1.80656 1.62924 1.59034 1.22143 1.06937 0.89227 0.88328 1.23188 0.92486 1.03777 1.00547 1.23254 0.97419 1.02805 0.98853 0.93036 0.82587 0.79649 0.85639 0.89531 0.85825 0.86076 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.89 11.52 21.68 0.25 -49.64 16 2 C 0.03 1.50 4.33 84.95 0.37 1.86 16 3 Si 0.97 44.26 29.60 68.60 2.03 46.29 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.35 -18.57 8.20 84.09 0.69 -17.88 16 8 H 0.09 4.39 6.86 -2.91 -0.02 4.37 16 9 N -0.42 -20.23 2.85 -616.69 -1.76 -21.99 16 10 C 0.50 24.49 6.23 86.70 0.54 25.03 16 11 O -0.55 -31.87 13.03 -4.08 -0.05 -31.92 16 12 C -0.10 -4.04 5.11 -20.07 -0.10 -4.15 16 13 C -0.05 -1.57 7.40 22.55 0.17 -1.40 16 14 C -0.07 -1.92 6.32 22.32 0.14 -1.78 16 15 Cl -0.03 -0.69 28.60 -2.72 -0.08 -0.77 16 16 C 0.13 3.29 7.28 22.49 0.16 3.46 16 17 F -0.11 -2.66 16.82 44.97 0.76 -1.90 16 18 C -0.12 -3.21 9.79 22.29 0.22 -3.00 16 19 C 0.01 0.47 6.34 22.60 0.14 0.62 16 20 Cl -0.04 -1.42 27.03 -2.72 -0.07 -1.50 16 21 C 0.04 1.40 4.44 44.99 0.20 1.60 16 22 C -0.16 -5.12 9.80 30.59 0.30 -4.82 16 23 C -0.18 -6.02 9.50 30.60 0.29 -5.73 16 24 H 0.26 14.79 8.32 -92.70 -0.77 14.02 16 25 H 0.16 5.16 5.95 -2.91 -0.02 5.15 16 26 H 0.19 3.54 8.06 -2.91 -0.02 3.51 16 27 H 0.13 4.02 6.28 -2.39 -0.01 4.00 16 28 H 0.09 3.11 6.51 -2.38 -0.02 3.09 16 29 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 30 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 31 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -65.35 301.91 5.40 -59.96 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 1.20 Total: 7.66 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 3.12 Total: -6.18 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: -1.51 Total: -71.63 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.05 Total: -31.92 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.76 Total: -1.90 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 17 Polarization: -2.12 SS G_CDS: -0.15 Total: -2.27 kcal Total: -65.35 5.40 -59.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293981493.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.043 kcal (2) G-P(sol) polarization free energy of solvation -65.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds