Wall clock time and date at job start Tue Mar 31 2020 12:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 C 1.50695 * 109.47112 * 184.99734 * 4 2 1 6 6 H 1.07998 * 120.00102 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00385 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99790 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00403 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47210 * 59.99646 * 9 7 5 11 11 H 1.48500 * 109.47090 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47176 * 299.99727 * 9 7 5 13 13 N 1.46902 * 109.46626 * 240.00176 * 2 1 3 14 14 C 1.46903 * 111.00170 * 306.04234 * 13 2 1 15 15 C 1.46890 * 111.00374 * 70.00094 * 13 2 1 16 16 C 1.50697 * 109.47465 * 169.99557 * 15 13 2 17 17 C 1.33402 * 125.19425 * 90.00165 * 16 15 13 18 18 C 1.38470 * 114.91332 * 180.02562 * 17 16 15 19 19 Br 1.89098 * 122.54753 * 179.97438 * 18 17 16 20 20 C 1.33429 * 114.90325 * 359.97438 * 18 17 16 21 21 S 1.75879 * 125.19953 * 269.69551 * 16 15 13 22 22 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 23 23 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 26 26 H 1.09001 * 109.47096 * 64.99934 * 4 2 1 27 27 H 0.96992 * 120.00329 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.46958 * 59.99852 * 14 13 2 29 29 H 1.08998 * 109.47182 * 180.02562 * 14 13 2 30 30 H 1.09004 * 109.47203 * 300.00492 * 14 13 2 31 31 H 1.09002 * 109.47248 * 290.00101 * 15 13 2 32 32 H 1.09002 * 109.47150 * 49.99746 * 15 13 2 33 33 H 1.08002 * 122.54513 * 0.02562 * 17 16 15 34 34 H 1.08002 * 125.19988 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3126 6 1 4.0789 -0.0855 0.5395 7 6 4.2306 -1.1936 2.3577 8 7 3.5766 -1.8378 3.2994 9 14 6.0921 -1.0612 2.4367 10 1 6.4846 0.3698 2.4971 11 1 6.5871 -1.7613 3.6491 12 1 6.6846 -1.6863 1.2269 13 7 2.0196 -0.6925 -1.1995 14 6 1.4343 -2.0355 -1.3079 15 6 1.7529 0.0972 -2.4090 16 6 2.4773 -0.5163 -3.5794 17 6 1.9766 -1.4500 -4.3900 18 6 2.8291 -1.8643 -5.3994 19 35 2.3401 -3.1779 -6.6688 20 6 4.0218 -1.2662 -5.4084 21 16 4.1094 -0.1051 -4.0901 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6055 -0.2618 2.1369 26 1 1.7517 -1.7715 1.2056 27 1 4.0609 -2.2446 4.0348 28 1 0.3490 -1.9549 -1.3693 29 1 1.8139 -2.5261 -2.2041 30 1 1.7059 -2.6221 -0.4302 31 1 0.6813 0.1053 -2.6087 32 1 2.1025 1.1188 -2.2604 33 1 0.9817 -1.8523 -4.2681 34 1 4.8109 -1.4616 -6.1194 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297832923.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:05 Heat of formation + Delta-G solvation = 20.780849 kcal Electronic energy + Delta-G solvation = -16688.100135 eV Core-core repulsion = 13986.307687 eV Total energy + Delta-G solvation = -2701.792448 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -39.91121 -38.47451 -35.06863 -33.36922 -31.72407 -30.22029 -29.19724 -28.17602 -25.82374 -24.84087 -23.03948 -20.37608 -20.15150 -18.36584 -18.18388 -17.10919 -16.61440 -16.41584 -15.55366 -15.19300 -14.70299 -14.35818 -14.09695 -14.00399 -13.74183 -13.48715 -13.28522 -13.06513 -12.79621 -12.58524 -12.42945 -12.30465 -12.16164 -11.85473 -11.73288 -11.62612 -11.21324 -11.08711 -11.03525 -10.45082 -9.73747 -9.34340 -8.92621 -8.07773 -6.12003 -0.12297 0.19013 0.76718 1.35979 1.42880 1.44517 1.45402 1.52437 2.49025 3.19468 3.32455 3.77542 4.08900 4.20948 4.25453 4.35246 4.45000 4.50965 4.60392 4.68855 4.74469 4.89606 4.99564 5.05730 5.17005 5.21612 5.26757 5.29895 5.51525 5.72327 5.92099 6.31456 6.37238 6.51587 7.01871 7.53715 9.04057 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.018144 B = 0.003813 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.873767 B = 7340.982158 C = 7891.360657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.096 3.904 3 H 0.069 0.931 4 C 0.036 3.964 5 C -0.498 4.498 6 H 0.058 0.942 7 C -0.003 4.003 8 N -0.940 5.940 9 Si 0.951 3.049 10 H -0.268 1.268 11 H -0.289 1.289 12 H -0.273 1.273 13 N -0.531 5.531 14 C 0.031 3.969 15 C 0.122 3.878 16 C -0.159 4.159 17 C -0.127 4.127 18 C -0.110 4.110 19 Br -0.029 7.029 20 C -0.191 4.191 21 S 0.160 5.840 22 H 0.057 0.943 23 H 0.069 0.931 24 H 0.053 0.947 25 H -0.007 1.007 26 H -0.003 1.003 27 H 0.258 0.742 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.151 0.849 34 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.868 1.185 -22.453 22.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.012 4.012 3 H 0.087 0.913 4 C -0.001 4.001 5 C -0.536 4.536 6 H 0.076 0.924 7 C -0.199 4.199 8 N -0.583 5.583 9 Si 0.777 3.223 10 H -0.193 1.193 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.254 5.254 14 C -0.117 4.117 15 C -0.007 4.007 16 C -0.278 4.278 17 C -0.158 4.158 18 C -0.203 4.203 19 Br 0.054 6.946 20 C -0.329 4.329 21 S 0.424 5.576 22 H 0.076 0.924 23 H 0.088 0.912 24 H 0.072 0.928 25 H 0.011 0.989 26 H 0.015 0.985 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.169 0.831 34 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -2.395 1.588 -22.192 22.377 hybrid contribution -0.807 -0.914 0.314 1.259 sum -3.201 0.673 -21.878 22.121 Atomic orbital electron populations 1.22405 0.96959 1.01860 1.02216 1.21651 0.92247 0.97257 0.90057 0.91322 1.19048 0.95126 0.94462 0.91498 1.21464 0.93322 1.32294 1.06562 0.92394 1.25806 1.02575 0.95724 0.95813 1.70079 1.37051 1.38069 1.13054 0.85710 0.81014 0.78445 0.77106 1.19346 1.21455 1.19868 1.61989 1.59582 1.02787 1.01076 1.22318 0.97051 0.90785 1.01565 1.20580 0.97555 0.96626 0.85961 1.24454 0.98297 1.03477 1.01594 1.19969 1.01940 0.98822 0.95089 1.20709 0.97068 1.02285 1.00190 1.96671 1.92731 1.51355 1.53846 1.25974 1.00842 1.02109 1.03997 1.84554 1.12762 1.37980 1.22320 0.92386 0.91218 0.92816 0.98905 0.98510 0.93363 0.94294 0.91424 0.93650 0.91461 0.89555 0.83124 0.79126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.46 8.44 71.98 0.61 -4.85 16 2 C 0.10 3.70 2.26 44.92 0.10 3.80 16 3 H 0.07 2.65 7.93 -2.39 -0.02 2.63 16 4 C 0.04 1.83 4.37 29.85 0.13 1.96 16 5 C -0.50 -27.90 8.84 25.60 0.23 -27.68 16 6 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 7 C 0.00 -0.19 5.46 84.66 0.46 0.28 16 8 N -0.94 -57.60 13.29 21.45 0.28 -57.31 16 9 Si 0.95 45.34 29.54 68.60 2.03 47.37 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 12 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 13 N -0.53 -18.87 4.42 -901.62 -3.98 -22.85 16 14 C 0.03 1.05 8.54 127.69 1.09 2.14 16 15 C 0.12 3.33 5.03 85.56 0.43 3.76 16 16 C -0.16 -4.15 5.44 24.59 0.13 -4.02 16 17 C -0.13 -3.06 8.36 21.23 0.18 -2.88 16 18 C -0.11 -2.51 6.17 21.24 0.13 -2.38 16 19 Br -0.03 -0.59 33.87 -20.37 -0.69 -1.28 16 20 C -0.19 -4.08 11.05 66.73 0.74 -3.34 16 21 S 0.16 3.90 23.33 -56.49 -1.32 2.58 16 22 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.07 1.76 6.91 -2.39 -0.02 1.74 16 24 H 0.05 1.69 6.33 -2.39 -0.02 1.67 16 25 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 26 H 0.00 -0.19 6.34 -2.39 -0.02 -0.20 16 27 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 28 H 0.04 1.15 6.21 -2.39 -0.01 1.14 16 29 H 0.07 2.14 6.07 -2.39 -0.01 2.12 16 30 H 0.04 1.86 6.37 -2.39 -0.02 1.85 16 31 H 0.07 1.60 7.06 -2.39 -0.02 1.58 16 32 H 0.09 2.29 7.93 -2.39 -0.02 2.27 16 33 H 0.15 3.33 8.05 -2.91 -0.02 3.31 16 34 H 0.19 3.13 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -62.79 309.29 1.64 -61.15 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: 1.10 Total: 3.56 kcal Atomic # 6 Polarization: -37.44 SS G_CDS: 4.23 Total: -33.21 kcal Atomic # 7 Polarization: -76.47 SS G_CDS: -3.70 Total: -80.16 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -1.32 Total: 2.58 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -0.69 Total: -1.28 kcal Total: -62.79 1.64 -61.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297832923.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.931 kcal (2) G-P(sol) polarization free energy of solvation -62.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds