Wall clock time and date at job start Tue Mar 31 2020 11:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38133 * 120.03332 * 2 1 4 4 C 1.38244 * 120.08402 * 180.28166 * 3 2 1 5 5 C 1.38373 * 120.14181 * 359.76583 * 4 3 2 6 6 I 2.09499 * 119.96875 * 179.97438 * 5 4 3 7 7 C 1.38142 * 120.05939 * 359.97438 * 5 4 3 8 8 C 1.38893 * 120.02965 * 179.79716 * 2 1 3 9 9 N 1.39668 * 120.07193 * 359.96638 * 8 2 1 10 10 C 1.46506 * 120.00181 * 179.73200 * 9 8 2 11 11 C 1.50703 * 109.47289 * 180.02562 * 10 9 8 12 12 H 1.07994 * 119.99399 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99789 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00144 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99733 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47181 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46716 * 120.00463 * 15 13 11 18 18 H 1.48500 * 109.46999 * 240.00161 * 15 13 11 19 19 H 1.09005 * 109.47020 * 270.21276 * 1 2 3 20 20 H 1.09009 * 109.47343 * 30.20694 * 1 2 3 21 21 H 1.08991 * 109.47372 * 150.21048 * 1 2 3 22 22 H 1.08005 * 119.95791 * 359.97438 * 3 2 1 23 23 H 1.08004 * 119.93416 * 179.74532 * 4 3 2 24 24 H 1.08000 * 120.03736 * 180.02562 * 7 5 4 25 25 H 0.97001 * 120.00568 * 359.73113 * 9 8 2 26 26 H 1.09001 * 109.47060 * 300.00571 * 10 9 8 27 27 H 1.09004 * 109.47073 * 60.00060 * 10 9 8 28 28 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5808 1.1971 -0.0059 5 6 4.2767 0.0011 -0.0069 6 53 6.3716 0.0093 -0.0166 7 6 3.5913 -1.1983 -0.0015 8 6 2.2021 -1.2025 0.0043 9 7 1.5059 -2.4133 0.0093 10 6 2.2406 -3.6808 0.0078 11 6 1.2633 -4.8280 0.0134 12 1 0.2013 -4.6324 0.0171 13 6 1.7253 -6.1270 0.0125 14 7 3.0187 -6.3650 0.0075 15 14 0.5139 -7.5490 0.0201 16 1 -0.8728 -7.0179 0.0258 17 1 0.7199 -8.3811 -1.1924 18 1 0.7317 -8.3783 1.2326 19 1 -0.3633 0.0038 1.0277 20 1 -0.3634 0.8882 -0.5171 21 1 -0.3633 -0.8918 -0.5105 22 1 1.6582 2.1311 -0.0004 23 1 4.1189 2.1335 -0.0100 24 1 4.1348 -2.1316 -0.0019 25 1 0.5359 -2.4151 0.0137 26 1 2.8634 -3.7387 -0.8849 27 1 2.8714 -3.7361 0.8950 28 1 3.3436 -7.2790 0.0073 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300907937.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:06 Heat of formation + Delta-G solvation = 25.158714 kcal Electronic energy + Delta-G solvation = -12651.048302 eV Core-core repulsion = 10332.409259 eV Total energy + Delta-G solvation = -2318.639043 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 316.997 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.28577 -35.24116 -33.22729 -32.42064 -29.36843 -29.07794 -26.67182 -25.18243 -23.18847 -20.84313 -20.49648 -17.14863 -15.84596 -15.54543 -14.96889 -14.42634 -13.88652 -13.53988 -13.06844 -12.70440 -12.43810 -12.24066 -11.96143 -11.88784 -11.12979 -11.03356 -10.79802 -10.43302 -10.18360 -10.04479 -9.58102 -9.43319 -9.41975 -8.59396 -8.31233 -6.67426 -6.25170 -4.31123 1.49667 1.57383 2.00253 3.19036 3.26722 3.29721 4.13864 4.19769 4.46934 5.12126 5.13567 5.31512 5.46047 5.65440 5.84393 5.89189 6.03613 6.18411 6.28556 6.62135 6.75066 6.85977 6.97654 7.25637 7.34947 7.57441 7.88070 8.16126 8.56571 8.82194 9.35579 10.85320 Molecular weight = 317.00amu Principal moments of inertia in cm(-1) A = 0.019744 B = 0.004788 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.828511 B = 5847.004606 C = 7244.382422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.169 4.169 3 C -0.069 4.069 4 C -0.169 4.169 5 C -0.046 4.046 6 I -0.066 7.066 7 C -0.167 4.167 8 C 0.238 3.762 9 N -0.723 5.723 10 C 0.248 3.752 11 C -0.540 4.540 12 H 0.062 0.938 13 C 0.065 3.935 14 N -0.886 5.886 15 Si 0.903 3.097 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.281 1.281 19 H 0.063 0.937 20 H 0.062 0.938 21 H 0.061 0.939 22 H 0.120 0.880 23 H 0.116 0.884 24 H 0.132 0.868 25 H 0.394 0.606 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.380 15.658 -0.039 16.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.175 4.175 3 C -0.089 4.089 4 C -0.193 4.193 5 C -0.187 4.187 6 I 0.084 6.916 7 C -0.193 4.193 8 C 0.126 3.874 9 N -0.346 5.346 10 C 0.127 3.873 11 C -0.579 4.579 12 H 0.081 0.919 13 C -0.139 4.139 14 N -0.524 5.524 15 Si 0.731 3.269 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.207 1.207 19 H 0.082 0.918 20 H 0.081 0.919 21 H 0.080 0.920 22 H 0.138 0.862 23 H 0.134 0.866 24 H 0.150 0.850 25 H 0.229 0.771 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.087 15.246 -0.048 16.416 hybrid contribution -2.044 -0.930 0.011 2.245 sum 4.043 14.316 -0.037 14.876 Atomic orbital electron populations 1.20568 0.91547 1.02159 1.01717 1.19434 0.95746 0.91898 1.10383 1.20620 0.93261 0.96618 0.98440 1.20547 0.94036 0.95964 1.08709 1.23742 0.93538 0.95636 1.05785 1.96648 0.96572 1.99634 1.98771 1.20628 0.92683 0.97419 1.08587 1.17805 0.90999 0.86718 0.91919 1.45626 1.08534 1.03554 1.76909 1.19171 0.92742 0.78632 0.96742 1.21191 0.93051 0.90612 1.53020 0.91936 1.24927 0.95448 0.98952 0.94574 1.69953 1.12475 1.20926 1.49046 0.86359 0.80952 0.81818 0.77816 1.19645 1.20734 1.20725 0.91829 0.91922 0.91984 0.86244 0.86588 0.85020 0.77114 0.96048 0.96022 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 9.57 36.01 0.34 -0.99 15 2 C -0.17 -2.67 5.90 -104.42 -0.62 -3.28 15 3 C -0.07 -0.97 9.70 -39.62 -0.38 -1.36 15 4 C -0.17 -2.49 9.75 -39.53 -0.39 -2.87 15 5 C -0.05 -0.75 6.20 -39.57 -0.25 -1.00 15 6 I -0.07 -0.95 40.26 -73.02 -2.94 -3.89 15 7 C -0.17 -3.17 9.02 -39.36 -0.36 -3.52 15 8 C 0.24 4.48 6.63 -83.79 -0.56 3.92 15 9 N -0.72 -14.92 5.62 -59.80 -0.34 -15.26 15 10 C 0.25 6.20 4.67 -5.19 -0.02 6.17 15 11 C -0.54 -14.39 9.28 -34.44 -0.32 -14.71 15 12 H 0.06 1.60 7.60 -52.49 -0.40 1.20 15 13 C 0.06 1.75 5.46 -17.82 -0.10 1.66 15 14 N -0.89 -25.26 13.29 55.43 0.74 -24.52 15 15 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 15 16 H -0.27 -6.07 7.11 56.52 0.40 -5.66 15 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 19 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 20 H 0.06 0.68 8.09 -51.92 -0.42 0.26 15 21 H 0.06 0.83 6.55 -51.93 -0.34 0.49 15 22 H 0.12 1.34 8.06 -52.48 -0.42 0.91 15 23 H 0.12 1.48 8.06 -52.48 -0.42 1.06 15 24 H 0.13 2.73 6.73 -52.49 -0.35 2.37 15 25 H 0.39 7.51 6.32 -40.82 -0.26 7.25 15 26 H 0.02 0.58 7.95 -51.93 -0.41 0.17 15 27 H 0.02 0.59 7.95 -51.93 -0.41 0.18 15 28 H 0.27 7.13 8.31 -40.82 -0.34 6.79 15 LS Contribution 269.95 15.07 4.07 4.07 Total: -1.00 -27.47 269.95 -9.13 -36.59 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -3.00 Total: 3.39 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -2.64 Total: -15.99 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.40 Total: -39.78 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 53 Polarization: -0.95 SS G_CDS: -2.94 Total: -3.89 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.47 -9.13 -36.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300907937.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.754 kcal (2) G-P(sol) polarization free energy of solvation -27.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds