Wall clock time and date at job start Tue Mar 31 2020 11:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38133 * 120.03332 * 2 1 4 4 C 1.38244 * 120.08402 * 180.28166 * 3 2 1 5 5 C 1.38373 * 120.14181 * 359.76583 * 4 3 2 6 6 I 2.09499 * 119.96875 * 179.97438 * 5 4 3 7 7 C 1.38142 * 120.05939 * 359.97438 * 5 4 3 8 8 C 1.38893 * 120.02965 * 179.79716 * 2 1 3 9 9 N 1.39668 * 120.07193 * 359.96638 * 8 2 1 10 10 C 1.46506 * 120.00181 * 179.73200 * 9 8 2 11 11 C 1.50703 * 109.47289 * 180.02562 * 10 9 8 12 12 H 1.07994 * 119.99399 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99789 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00144 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99733 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47181 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46716 * 120.00463 * 15 13 11 18 18 H 1.48500 * 109.46999 * 240.00161 * 15 13 11 19 19 H 1.09005 * 109.47020 * 270.21276 * 1 2 3 20 20 H 1.09009 * 109.47343 * 30.20694 * 1 2 3 21 21 H 1.08991 * 109.47372 * 150.21048 * 1 2 3 22 22 H 1.08005 * 119.95791 * 359.97438 * 3 2 1 23 23 H 1.08004 * 119.93416 * 179.74532 * 4 3 2 24 24 H 1.08000 * 120.03736 * 180.02562 * 7 5 4 25 25 H 0.97001 * 120.00568 * 359.73113 * 9 8 2 26 26 H 1.09001 * 109.47060 * 300.00571 * 10 9 8 27 27 H 1.09004 * 109.47073 * 60.00060 * 10 9 8 28 28 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5808 1.1971 -0.0059 5 6 4.2767 0.0011 -0.0069 6 53 6.3716 0.0093 -0.0166 7 6 3.5913 -1.1983 -0.0015 8 6 2.2021 -1.2025 0.0043 9 7 1.5059 -2.4133 0.0093 10 6 2.2406 -3.6808 0.0078 11 6 1.2633 -4.8280 0.0134 12 1 0.2013 -4.6324 0.0171 13 6 1.7253 -6.1270 0.0125 14 7 3.0187 -6.3650 0.0075 15 14 0.5139 -7.5490 0.0201 16 1 -0.8728 -7.0179 0.0258 17 1 0.7199 -8.3811 -1.1924 18 1 0.7317 -8.3783 1.2326 19 1 -0.3633 0.0038 1.0277 20 1 -0.3634 0.8882 -0.5171 21 1 -0.3633 -0.8918 -0.5105 22 1 1.6582 2.1311 -0.0004 23 1 4.1189 2.1335 -0.0100 24 1 4.1348 -2.1316 -0.0019 25 1 0.5359 -2.4151 0.0137 26 1 2.8634 -3.7387 -0.8849 27 1 2.8714 -3.7361 0.8950 28 1 3.3436 -7.2790 0.0073 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300907937.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:06 Heat of formation + Delta-G solvation = 10.226855 kcal Electronic energy + Delta-G solvation = -12651.695796 eV Core-core repulsion = 10332.409259 eV Total energy + Delta-G solvation = -2319.286537 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 316.997 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.61628 -36.85076 -34.86825 -33.99190 -30.87584 -30.33568 -28.43309 -26.42696 -24.99510 -22.33889 -21.84085 -18.95924 -17.37325 -17.19046 -16.51477 -15.98632 -15.33406 -14.90379 -14.64060 -14.26746 -14.05751 -13.60206 -13.21592 -13.17367 -12.84994 -12.81740 -12.29847 -12.02160 -11.63655 -11.47434 -11.41259 -10.87244 -10.79628 -10.54103 -9.56963 -8.32409 -8.19130 -6.46806 0.23334 0.28677 0.69437 1.40013 1.40047 1.53390 2.32292 2.83021 2.86484 3.03175 3.95461 4.11530 4.28981 4.48205 4.63766 4.80483 4.86860 4.89326 5.02363 5.21651 5.25375 5.35432 5.46700 5.50292 5.60503 5.83229 6.00308 6.41949 6.70000 7.11057 7.27145 8.79539 Molecular weight = 317.00amu Principal moments of inertia in cm(-1) A = 0.019744 B = 0.004788 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.828511 B = 5847.004606 C = 7244.382422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.161 4.161 3 C -0.063 4.063 4 C -0.156 4.156 5 C -0.060 4.060 6 I -0.048 7.048 7 C -0.191 4.191 8 C 0.206 3.794 9 N -0.730 5.730 10 C 0.272 3.728 11 C -0.556 4.556 12 H 0.072 0.928 13 C 0.009 3.991 14 N -0.926 5.926 15 Si 0.977 3.023 16 H -0.259 1.259 17 H -0.277 1.277 18 H -0.277 1.277 19 H 0.074 0.926 20 H 0.092 0.908 21 H 0.053 0.947 22 H 0.163 0.837 23 H 0.143 0.857 24 H 0.099 0.901 25 H 0.400 0.600 26 H -0.012 1.012 27 H -0.011 1.011 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.805 17.536 -0.037 17.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.167 4.167 3 C -0.083 4.083 4 C -0.179 4.179 5 C -0.201 4.201 6 I 0.102 6.898 7 C -0.217 4.217 8 C 0.097 3.903 9 N -0.357 5.357 10 C 0.149 3.851 11 C -0.594 4.594 12 H 0.090 0.910 13 C -0.191 4.191 14 N -0.565 5.565 15 Si 0.801 3.199 16 H -0.183 1.183 17 H -0.203 1.203 18 H -0.203 1.203 19 H 0.093 0.907 20 H 0.111 0.889 21 H 0.072 0.928 22 H 0.181 0.819 23 H 0.161 0.839 24 H 0.117 0.883 25 H 0.237 0.763 26 H 0.006 0.994 27 H 0.006 0.994 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.509 17.183 -0.046 17.765 hybrid contribution -1.463 -1.341 0.010 1.985 sum 3.046 15.841 -0.036 16.132 Atomic orbital electron populations 1.20650 0.89327 1.03232 1.02749 1.19836 0.97455 0.91078 1.08290 1.21118 0.93145 0.97578 0.96427 1.20977 0.94686 0.96119 1.06074 1.23961 0.94860 0.95444 1.05882 1.96624 0.94851 1.99595 1.98760 1.20509 0.93156 0.97242 1.10776 1.18109 0.91172 0.87134 0.93839 1.45197 1.08477 1.02809 1.79195 1.18549 0.92112 0.80791 0.93617 1.21586 0.93724 0.91381 1.52734 0.90976 1.25924 0.97267 1.01946 0.93915 1.70093 1.14633 1.21692 1.50034 0.85216 0.78874 0.77969 0.77833 1.18274 1.20302 1.20290 0.90729 0.88919 0.92816 0.81943 0.83893 0.88323 0.76339 0.99398 0.99361 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.37 9.57 71.24 0.68 -1.69 15 2 C -0.16 -4.77 5.90 -19.73 -0.12 -4.89 15 3 C -0.06 -1.54 9.70 22.25 0.22 -1.32 15 4 C -0.16 -4.15 9.75 22.30 0.22 -3.93 15 5 C -0.06 -1.96 6.20 22.28 0.14 -1.82 15 6 I -0.05 -1.36 40.26 -18.82 -0.76 -2.12 15 7 C -0.19 -7.53 9.02 22.41 0.20 -7.32 15 8 C 0.21 7.89 6.63 38.21 0.25 8.14 15 9 N -0.73 -31.27 5.62 -343.12 -1.93 -33.20 15 10 C 0.27 14.45 4.67 85.63 0.40 14.85 15 11 C -0.56 -30.45 9.28 25.60 0.24 -30.21 15 12 H 0.07 3.71 7.60 -2.91 -0.02 3.69 15 13 C 0.01 0.52 5.46 84.65 0.46 0.98 15 14 N -0.93 -54.64 13.29 21.45 0.28 -54.35 15 15 Si 0.98 42.57 29.54 68.60 2.03 44.60 15 16 H -0.26 -10.64 7.11 99.48 0.71 -9.94 15 17 H -0.28 -11.83 7.11 99.48 0.71 -11.13 15 18 H -0.28 -11.83 7.11 99.48 0.71 -11.12 15 19 H 0.07 1.59 8.14 -2.38 -0.02 1.57 15 20 H 0.09 1.59 8.09 -2.38 -0.02 1.57 15 21 H 0.05 1.34 6.55 -2.39 -0.02 1.33 15 22 H 0.16 2.66 8.06 -2.91 -0.02 2.63 15 23 H 0.14 3.06 8.06 -2.91 -0.02 3.04 15 24 H 0.10 4.47 6.73 -2.91 -0.02 4.45 15 25 H 0.40 15.54 6.32 -92.71 -0.59 14.96 15 26 H -0.01 -0.69 7.95 -2.39 -0.02 -0.71 15 27 H -0.01 -0.66 7.95 -2.38 -0.02 -0.68 15 28 H 0.27 14.82 8.31 -92.71 -0.77 14.05 15 Total: -1.00 -61.47 269.95 2.90 -58.57 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.58 Total: 13.71 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 2.69 Total: -27.20 kcal Atomic # 7 Polarization: -85.91 SS G_CDS: -1.64 Total: -87.56 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 53 Polarization: -1.36 SS G_CDS: -0.76 Total: -2.12 kcal Total: -61.47 2.90 -58.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300907937.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.800 kcal (2) G-P(sol) polarization free energy of solvation -61.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds