Wall clock time and date at job start Tue Mar 31 2020 11:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36947 * 119.99647 * 2 1 4 4 H 1.08000 * 119.99619 * 206.91443 * 3 2 1 5 5 C 1.38810 * 119.99838 * 26.91598 * 3 2 1 6 6 N 1.31615 * 120.00358 * 11.72690 * 5 3 2 7 7 Si 1.86797 * 119.99590 * 191.72431 * 5 3 2 8 8 H 1.48502 * 109.47628 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.47047 * 120.00362 * 7 5 3 10 10 H 1.48502 * 109.47171 * 239.99846 * 7 5 3 11 11 C 1.46498 * 120.00392 * 179.97438 * 2 1 3 12 12 C 1.50701 * 109.46980 * 275.92385 * 11 2 1 13 13 C 1.38244 * 120.00390 * 96.83704 * 12 11 2 14 14 C 1.38217 * 120.00716 * 179.72296 * 13 12 11 15 15 C 1.38260 * 120.01028 * 0.25347 * 14 13 12 16 16 C 1.38194 * 120.01091 * 0.02562 * 15 14 13 17 17 C 1.38271 * 120.00171 * 277.07068 * 12 11 2 18 18 I 2.09498 * 120.00933 * 0.04238 * 17 12 11 19 19 H 1.08997 * 109.47059 * 269.91510 * 1 2 3 20 20 H 1.08999 * 109.47222 * 29.91962 * 1 2 3 21 21 H 1.08997 * 109.46792 * 149.91727 * 1 2 3 22 22 H 0.97001 * 120.00032 * 180.02562 * 6 5 3 23 23 H 1.08997 * 109.47125 * 155.92066 * 11 2 1 24 24 H 1.09001 * 109.46626 * 35.92041 * 11 2 1 25 25 H 1.07997 * 119.99698 * 0.02562 * 13 12 11 26 26 H 1.07995 * 119.99316 * 180.23781 * 14 13 12 27 27 H 1.08002 * 119.99717 * 179.97438 * 15 14 13 28 28 H 1.08001 * 120.00687 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1419 1.2367 -0.4234 5 6 1.5683 2.3230 0.5442 6 7 0.4694 2.2213 1.2614 7 14 2.3457 3.9973 0.2587 8 1 3.5648 3.8415 -0.5748 9 1 1.3777 4.8797 -0.4411 10 1 2.7122 4.6021 1.5645 11 6 2.1976 -1.2687 0.0006 12 6 2.3218 -1.7763 1.4140 13 6 1.4263 -2.7145 1.8928 14 6 1.5436 -3.1844 3.1874 15 6 2.5533 -2.7125 4.0055 16 6 3.4453 -1.7705 3.5293 17 6 3.3284 -1.3003 2.2337 18 53 4.6805 0.1277 1.5114 19 1 -0.3633 -0.0015 1.0276 20 1 -0.3633 0.8907 -0.5126 21 1 -0.3633 -0.8892 -0.5151 22 1 0.0629 3.0159 1.6413 23 1 3.1917 -1.1143 -0.4188 24 1 1.6585 -1.9997 -0.6020 25 1 0.6380 -3.0838 1.2537 26 1 0.8463 -3.9201 3.5599 27 1 2.6446 -3.0795 5.0171 28 1 4.2343 -1.4022 4.1683 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306714368.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:36 Heat of formation + Delta-G solvation = 66.317792 kcal Electronic energy + Delta-G solvation = -13367.729675 eV Core-core repulsion = 11050.875423 eV Total energy + Delta-G solvation = -2316.854251 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 316.997 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -38.92819 -35.48344 -32.07591 -31.51626 -30.05801 -27.37437 -26.10773 -25.22285 -21.87942 -21.60146 -19.96905 -16.68313 -16.06575 -14.80820 -14.70785 -14.39884 -13.67486 -13.14446 -12.96604 -12.54737 -12.18352 -11.75456 -11.21534 -10.90789 -10.76717 -10.60175 -10.34569 -10.21183 -10.07314 -9.85936 -9.49688 -8.83978 -8.36253 -8.31256 -7.91469 -6.65191 -5.68705 -3.11875 1.72056 1.86856 2.03515 3.40579 3.48886 3.49835 4.19143 4.58287 5.30143 5.34574 5.42715 5.57250 5.71361 5.82070 5.96648 6.13050 6.34768 6.45285 6.61858 6.75114 6.80422 6.89336 7.12511 7.34305 7.41120 7.71065 7.94106 8.45746 9.28129 9.88119 10.38660 11.37515 Molecular weight = 317.00amu Principal moments of inertia in cm(-1) A = 0.017790 B = 0.011233 C = 0.008019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.565438 B = 2492.040195 C = 3490.820305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.582 5.582 3 C -0.241 4.241 4 H 0.081 0.919 5 C 0.013 3.987 6 N -0.903 5.903 7 Si 0.886 3.114 8 H -0.274 1.274 9 H -0.290 1.290 10 H -0.288 1.288 11 C 0.166 3.834 12 C -0.052 4.052 13 C -0.117 4.117 14 C -0.109 4.109 15 C -0.141 4.141 16 C -0.091 4.091 17 C -0.078 4.078 18 I -0.038 7.038 19 H 0.024 0.976 20 H 0.049 0.951 21 H -0.004 1.004 22 H 0.250 0.750 23 H 0.066 0.934 24 H 0.046 0.954 25 H 0.118 0.882 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.018 -8.868 2.352 11.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.302 5.302 3 C -0.371 4.371 4 H 0.098 0.902 5 C -0.186 4.186 6 N -0.547 5.547 7 Si 0.716 3.284 8 H -0.199 1.199 9 H -0.217 1.217 10 H -0.215 1.215 11 C 0.039 3.961 12 C -0.059 4.059 13 C -0.138 4.138 14 C -0.128 4.128 15 C -0.162 4.162 16 C -0.112 4.112 17 C -0.220 4.220 18 I 0.112 6.888 19 H 0.042 0.958 20 H 0.068 0.932 21 H 0.015 0.985 22 H 0.061 0.939 23 H 0.085 0.915 24 H 0.064 0.936 25 H 0.136 0.864 26 H 0.134 0.866 27 H 0.135 0.865 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.848 -7.677 1.861 11.135 hybrid contribution -0.717 0.240 0.765 1.075 sum 7.131 -7.437 2.626 10.633 Atomic orbital electron populations 1.20780 0.82488 0.96350 0.98591 1.44125 1.01782 1.00122 1.84209 1.19435 1.01235 0.85126 1.31342 0.90183 1.24980 0.97875 0.98324 0.97415 1.70046 1.21288 1.27586 1.35803 0.86430 0.79045 0.85195 0.77724 1.19885 1.21733 1.21528 1.20251 0.97792 0.89041 0.89063 1.21189 0.91773 0.92177 1.00767 1.20962 0.99131 0.97876 0.95861 1.21092 0.97781 0.99698 0.94227 1.20912 0.96550 0.99233 0.99468 1.20959 0.99155 0.96998 0.94119 1.24125 1.00760 1.00470 0.96626 1.96506 1.49892 1.53916 1.88468 0.95763 0.93206 0.98525 0.93942 0.91537 0.93562 0.86382 0.86633 0.86503 0.86481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.94 9.02 59.85 0.54 4.48 15 2 N -0.58 -14.24 2.90 -182.50 -0.53 -14.77 15 3 C -0.24 -6.30 7.33 -15.06 -0.11 -6.41 15 4 H 0.08 2.06 6.50 -52.49 -0.34 1.72 15 5 C 0.01 0.35 5.08 -17.43 -0.09 0.26 15 6 N -0.90 -26.09 10.92 55.49 0.61 -25.49 15 7 Si 0.89 21.96 29.57 -169.99 -5.03 16.93 15 8 H -0.27 -6.58 7.11 56.52 0.40 -6.18 15 9 H -0.29 -7.24 7.11 56.52 0.40 -6.83 15 10 H -0.29 -7.26 7.11 56.52 0.40 -6.85 15 11 C 0.17 3.44 5.37 -5.19 -0.03 3.41 15 12 C -0.05 -1.04 5.45 -104.61 -0.57 -1.61 15 13 C -0.12 -2.06 9.67 -39.59 -0.38 -2.44 15 14 C -0.11 -1.70 10.05 -39.58 -0.40 -2.10 15 15 C -0.14 -2.19 10.05 -39.59 -0.40 -2.59 15 16 C -0.09 -1.58 9.76 -39.57 -0.39 -1.96 15 17 C -0.08 -1.53 6.20 -39.54 -0.25 -1.78 15 18 I -0.04 -0.74 34.68 -73.02 -2.53 -3.27 15 19 H 0.02 0.64 7.57 -51.93 -0.39 0.25 15 20 H 0.05 1.29 7.23 -51.93 -0.38 0.92 15 21 H 0.00 -0.08 7.95 -51.93 -0.41 -0.49 15 22 H 0.25 7.11 8.31 -40.82 -0.34 6.77 15 23 H 0.07 1.36 6.56 -51.93 -0.34 1.02 15 24 H 0.05 0.87 7.87 -51.93 -0.41 0.46 15 25 H 0.12 1.87 8.06 -52.49 -0.42 1.45 15 26 H 0.12 1.45 8.06 -52.49 -0.42 1.02 15 27 H 0.12 1.46 8.06 -52.49 -0.42 1.03 15 28 H 0.12 1.82 8.06 -52.49 -0.42 1.39 15 LS Contribution 261.58 15.07 3.94 3.94 Total: -1.00 -29.00 261.58 -8.70 -37.70 By element: Atomic # 1 Polarization: -1.22 SS G_CDS: -3.10 Total: -4.32 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -2.07 Total: -10.73 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.08 Total: -40.26 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Atomic # 53 Polarization: -0.74 SS G_CDS: -2.53 Total: -3.27 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.00 -8.70 -37.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306714368.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.018 kcal (2) G-P(sol) polarization free energy of solvation -28.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds