Wall clock time and date at job start Tue Mar 31 2020 11:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36947 * 119.99647 * 2 1 4 4 H 1.08000 * 119.99619 * 206.91443 * 3 2 1 5 5 C 1.38810 * 119.99838 * 26.91598 * 3 2 1 6 6 N 1.31615 * 120.00358 * 11.72690 * 5 3 2 7 7 Si 1.86797 * 119.99590 * 191.72431 * 5 3 2 8 8 H 1.48502 * 109.47628 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.47047 * 120.00362 * 7 5 3 10 10 H 1.48502 * 109.47171 * 239.99846 * 7 5 3 11 11 C 1.46498 * 120.00392 * 179.97438 * 2 1 3 12 12 C 1.50701 * 109.46980 * 275.92385 * 11 2 1 13 13 C 1.38244 * 120.00390 * 96.83704 * 12 11 2 14 14 C 1.38217 * 120.00716 * 179.72296 * 13 12 11 15 15 C 1.38260 * 120.01028 * 0.25347 * 14 13 12 16 16 C 1.38194 * 120.01091 * 0.02562 * 15 14 13 17 17 C 1.38271 * 120.00171 * 277.07068 * 12 11 2 18 18 I 2.09498 * 120.00933 * 0.04238 * 17 12 11 19 19 H 1.08997 * 109.47059 * 269.91510 * 1 2 3 20 20 H 1.08999 * 109.47222 * 29.91962 * 1 2 3 21 21 H 1.08997 * 109.46792 * 149.91727 * 1 2 3 22 22 H 0.97001 * 120.00032 * 180.02562 * 6 5 3 23 23 H 1.08997 * 109.47125 * 155.92066 * 11 2 1 24 24 H 1.09001 * 109.46626 * 35.92041 * 11 2 1 25 25 H 1.07997 * 119.99698 * 0.02562 * 13 12 11 26 26 H 1.07995 * 119.99316 * 180.23781 * 14 13 12 27 27 H 1.08002 * 119.99717 * 179.97438 * 15 14 13 28 28 H 1.08001 * 120.00687 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1419 1.2367 -0.4234 5 6 1.5683 2.3230 0.5442 6 7 0.4694 2.2213 1.2614 7 14 2.3457 3.9973 0.2587 8 1 3.5648 3.8415 -0.5748 9 1 1.3777 4.8797 -0.4411 10 1 2.7122 4.6021 1.5645 11 6 2.1976 -1.2687 0.0006 12 6 2.3218 -1.7763 1.4140 13 6 1.4263 -2.7145 1.8928 14 6 1.5436 -3.1844 3.1874 15 6 2.5533 -2.7125 4.0055 16 6 3.4453 -1.7705 3.5293 17 6 3.3284 -1.3003 2.2337 18 53 4.6805 0.1277 1.5114 19 1 -0.3633 -0.0015 1.0276 20 1 -0.3633 0.8907 -0.5126 21 1 -0.3633 -0.8892 -0.5151 22 1 0.0629 3.0159 1.6413 23 1 3.1917 -1.1143 -0.4188 24 1 1.6585 -1.9997 -0.6020 25 1 0.6380 -3.0838 1.2537 26 1 0.8463 -3.9201 3.5599 27 1 2.6446 -3.0795 5.0171 28 1 4.2343 -1.4022 4.1683 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306714368.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:35 Heat of formation + Delta-G solvation = 51.256647 kcal Electronic energy + Delta-G solvation = -13368.382775 eV Core-core repulsion = 11050.875423 eV Total energy + Delta-G solvation = -2317.507352 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 316.997 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.31033 -37.27002 -33.77911 -32.96700 -31.72209 -28.83095 -27.92361 -26.98231 -23.57556 -23.00281 -21.48320 -18.64683 -17.43204 -16.63047 -16.16240 -15.79439 -15.54734 -14.92969 -14.53954 -13.91379 -13.61425 -13.46090 -13.02779 -12.82898 -12.50608 -12.39051 -12.05111 -11.90429 -11.82975 -11.53475 -10.95800 -10.62010 -10.09970 -9.66644 -9.36653 -8.60470 -7.72989 -5.17542 0.37379 0.53120 0.61134 1.42703 1.47229 1.53564 2.56464 2.87455 3.47422 3.89043 4.01970 4.11048 4.23443 4.47137 4.62245 4.74723 4.87876 4.95226 5.03092 5.17568 5.34979 5.48461 5.59040 5.71153 5.72847 5.86550 6.11299 6.46208 7.27106 7.93792 8.40061 9.32616 Molecular weight = 317.00amu Principal moments of inertia in cm(-1) A = 0.017790 B = 0.011233 C = 0.008019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.565438 B = 2492.040195 C = 3490.820305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.599 5.599 3 C -0.224 4.224 4 H 0.083 0.917 5 C -0.033 4.033 6 N -0.936 5.936 7 Si 0.923 3.077 8 H -0.262 1.262 9 H -0.295 1.295 10 H -0.296 1.296 11 C 0.167 3.833 12 C -0.079 4.079 13 C -0.124 4.124 14 C -0.106 4.106 15 C -0.131 4.131 16 C -0.104 4.104 17 C -0.098 4.098 18 I -0.050 7.050 19 H -0.004 1.004 20 H 0.022 0.978 21 H 0.029 0.971 22 H 0.241 0.759 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.133 0.867 26 H 0.153 0.847 27 H 0.154 0.846 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.283 -10.746 3.063 13.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.320 5.320 3 C -0.355 4.355 4 H 0.100 0.900 5 C -0.228 4.228 6 N -0.584 5.584 7 Si 0.753 3.247 8 H -0.186 1.186 9 H -0.223 1.223 10 H -0.224 1.224 11 C 0.040 3.960 12 C -0.084 4.084 13 C -0.145 4.145 14 C -0.124 4.124 15 C -0.151 4.151 16 C -0.125 4.125 17 C -0.239 4.239 18 I 0.100 6.900 19 H 0.015 0.985 20 H 0.041 0.959 21 H 0.047 0.953 22 H 0.051 0.949 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.151 0.849 26 H 0.170 0.830 27 H 0.171 0.829 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.153 -9.590 2.562 12.846 hybrid contribution -0.750 0.604 0.574 1.121 sum 7.403 -8.986 3.136 12.058 Atomic orbital electron populations 1.20497 0.82748 0.96478 0.96892 1.44220 1.01911 1.01049 1.84836 1.19588 1.00676 0.85879 1.29314 0.89973 1.25405 0.98598 1.00439 0.98380 1.70176 1.22894 1.27316 1.38027 0.85817 0.78754 0.82871 0.77234 1.18647 1.22263 1.22373 1.20275 0.97463 0.87833 0.90380 1.21076 0.93289 0.94234 0.99840 1.21246 0.98709 0.97354 0.97175 1.21533 0.98035 0.99610 0.93260 1.21402 0.95170 0.97538 1.00996 1.21248 1.00181 0.97553 0.93527 1.24286 1.01059 1.00826 0.97744 1.96471 1.50224 1.54576 1.88685 0.98530 0.95920 0.95258 0.94940 0.91736 0.91580 0.84939 0.82969 0.82866 0.85213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.63 9.02 127.77 1.15 9.78 15 2 N -0.60 -28.91 2.90 -731.32 -2.12 -31.03 15 3 C -0.22 -11.64 7.33 84.03 0.62 -11.02 15 4 H 0.08 4.18 6.50 -2.91 -0.02 4.16 15 5 C -0.03 -1.83 5.08 84.86 0.43 -1.40 15 6 N -0.94 -55.15 10.92 21.65 0.24 -54.91 15 7 Si 0.92 45.30 29.57 68.60 2.03 47.32 15 8 H -0.26 -12.18 7.11 99.48 0.71 -11.47 15 9 H -0.30 -14.57 7.11 99.48 0.71 -13.87 15 10 H -0.30 -14.78 7.11 99.48 0.71 -14.07 15 11 C 0.17 6.68 5.37 85.63 0.46 7.14 15 12 C -0.08 -2.98 5.45 -19.85 -0.11 -3.08 15 13 C -0.12 -4.00 9.67 22.27 0.22 -3.78 15 14 C -0.11 -2.86 10.05 22.27 0.22 -2.64 15 15 C -0.13 -3.54 10.05 22.26 0.22 -3.31 15 16 C -0.10 -3.34 9.76 22.28 0.22 -3.13 15 17 C -0.10 -3.67 6.20 22.30 0.14 -3.53 15 18 I -0.05 -1.90 34.68 -18.82 -0.65 -2.55 15 19 H 0.00 -0.20 7.57 -2.39 -0.02 -0.21 15 20 H 0.02 1.18 7.23 -2.39 -0.02 1.16 15 21 H 0.03 1.19 7.95 -2.39 -0.02 1.17 15 22 H 0.24 14.09 8.31 -92.71 -0.77 13.32 15 23 H 0.06 2.57 6.56 -2.39 -0.02 2.56 15 24 H 0.07 2.34 7.87 -2.39 -0.02 2.32 15 25 H 0.13 3.78 8.06 -2.91 -0.02 3.76 15 26 H 0.15 2.98 8.06 -2.91 -0.02 2.96 15 27 H 0.15 3.01 8.06 -2.91 -0.02 2.98 15 28 H 0.13 3.73 8.06 -2.91 -0.02 3.71 15 Total: -1.00 -61.89 261.58 4.21 -57.68 By element: Atomic # 1 Polarization: -2.68 SS G_CDS: 1.15 Total: -1.53 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 3.57 Total: -14.98 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -1.88 Total: -85.94 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 53 Polarization: -1.90 SS G_CDS: -0.65 Total: -2.55 kcal Total: -61.89 4.21 -57.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306714368.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.932 kcal (2) G-P(sol) polarization free energy of solvation -61.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds