Wall clock time and date at job start Tue Mar 31 2020 11:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 119.99892 * 2 1 4 4 H 1.48501 * 109.47145 * 239.99822 * 3 2 1 5 5 H 1.48500 * 109.46967 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46824 * 119.99960 * 3 2 1 7 7 C 1.37881 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99681 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47041 * 179.97438 * 9 7 2 11 11 C 1.46903 * 111.00056 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47122 * 179.97438 * 11 10 9 13 13 C 1.38259 * 119.99953 * 270.28008 * 12 11 10 14 14 C 1.38220 * 120.01238 * 180.23541 * 13 12 11 15 15 C 1.38251 * 120.00620 * 359.48336 * 14 13 12 16 16 C 1.38275 * 119.99010 * 0.26296 * 15 14 13 17 17 I 2.09501 * 120.00390 * 179.97438 * 16 15 14 18 18 C 1.38206 * 119.99490 * 90.00328 * 12 11 10 19 19 H 0.97001 * 120.00453 * 0.02562 * 1 2 3 20 20 H 1.09007 * 109.47461 * 60.00144 * 9 7 2 21 21 H 1.09002 * 109.47196 * 300.00204 * 9 7 2 22 22 H 1.00896 * 111.00491 * 303.95468 * 10 9 7 23 23 H 1.09003 * 109.47382 * 60.00460 * 11 10 9 24 24 H 1.08998 * 109.47136 * 299.99917 * 11 10 9 25 25 H 1.08000 * 119.99351 * 359.97438 * 13 12 11 26 26 H 1.08002 * 119.99998 * 179.76943 * 14 13 12 27 27 H 1.07999 * 120.00432 * 180.23486 * 15 14 13 28 28 H 1.08002 * 120.00291 * 0.04002 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2056 -3.6156 -0.0018 11 6 1.5053 -4.9070 -0.0012 12 6 2.5149 -6.0259 -0.0031 13 6 2.9805 -6.5348 -1.2014 14 6 3.9028 -7.5643 -1.2035 15 6 4.3679 -8.0783 -0.0073 16 6 3.9063 -7.5659 1.1912 17 53 4.6104 -8.3450 3.0040 18 6 2.9795 -6.5394 1.1929 19 1 -0.4851 0.8400 -0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6247 -2.5570 0.8897 22 1 2.8399 -3.5483 -0.7835 23 1 0.8795 -4.9814 -0.8905 24 1 0.8815 -4.9816 0.8895 25 1 2.6204 -6.1307 -2.1359 26 1 4.2636 -7.9642 -2.1396 27 1 5.0914 -8.8801 -0.0090 28 1 2.6186 -6.1392 2.1289 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308186689.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:40 Heat of formation + Delta-G solvation = 29.881936 kcal Electronic energy + Delta-G solvation = -12308.012060 eV Core-core repulsion = 9989.577832 eV Total energy + Delta-G solvation = -2318.434229 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 316.997 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.41466 -35.48469 -32.90007 -32.11412 -30.96934 -27.95193 -27.02106 -24.39104 -22.24433 -21.53984 -20.62413 -16.85891 -16.30584 -15.47945 -14.91210 -14.54553 -14.13109 -13.61611 -13.27492 -13.00805 -12.65857 -12.32529 -11.64398 -11.37994 -11.01195 -10.83745 -10.70720 -10.61595 -10.34093 -9.98380 -9.90988 -9.26112 -8.83419 -8.70570 -8.49936 -7.37396 -6.05763 -4.08051 1.11947 1.15427 1.34342 3.32613 3.36396 3.39735 3.66400 4.41669 4.78588 4.86949 5.07474 5.30080 5.31066 5.39910 5.48768 5.60958 5.88860 5.99771 6.15882 6.24292 6.34284 6.65460 6.86627 7.17540 7.35669 7.73862 8.07750 8.31744 8.54006 9.00558 9.56955 11.05230 Molecular weight = 317.00amu Principal moments of inertia in cm(-1) A = 0.027962 B = 0.003328 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.112695 B = 8412.466930 C = 8977.539539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.684 5.684 11 C 0.093 3.907 12 C -0.062 4.062 13 C -0.098 4.098 14 C -0.118 4.118 15 C -0.096 4.096 16 C -0.099 4.099 17 I -0.055 7.055 18 C -0.065 4.065 19 H 0.262 0.738 20 H -0.012 1.012 21 H 0.029 0.971 22 H 0.330 0.670 23 H 0.032 0.968 24 H 0.075 0.925 25 H 0.126 0.874 26 H 0.127 0.873 27 H 0.124 0.876 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.124 -21.714 3.101 23.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.314 5.314 11 C -0.037 4.037 12 C -0.064 4.064 13 C -0.117 4.117 14 C -0.137 4.137 15 C -0.117 4.117 16 C -0.239 4.239 17 I 0.095 6.905 18 C -0.086 4.086 19 H 0.072 0.928 20 H 0.005 0.995 21 H 0.047 0.953 22 H 0.147 0.853 23 H 0.050 0.950 24 H 0.094 0.906 25 H 0.144 0.856 26 H 0.145 0.855 27 H 0.142 0.858 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.519 -22.106 5.071 24.597 hybrid contribution -0.335 1.378 -1.961 2.420 sum 9.184 -20.728 3.111 22.884 Atomic orbital electron populations 1.69945 1.06085 1.26977 1.50710 1.24987 0.94888 0.99383 0.95261 0.86529 0.79422 0.82573 0.78702 1.20247 1.21311 1.20101 1.21130 0.93511 0.90157 1.50638 0.91976 1.19584 0.90542 0.87190 0.95911 1.60740 1.21134 1.00452 1.49093 1.20915 0.93194 0.88583 1.00995 1.20115 0.97570 0.96323 0.92378 1.21255 0.96486 0.95866 0.98072 1.21111 0.97842 0.97221 0.97565 1.20986 0.99586 0.99811 0.91276 1.24153 1.02994 1.01772 0.95002 1.96760 1.87342 1.84311 1.22105 1.21017 0.94889 0.93800 0.98923 0.92804 0.99473 0.95272 0.85328 0.95003 0.90640 0.85600 0.85494 0.85817 0.85173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 13.29 55.43 0.74 -25.98 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 3 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 15 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 7 C -0.52 -14.59 9.32 -34.44 -0.32 -14.91 15 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 15 9 C 0.19 5.04 5.44 -4.98 -0.03 5.01 15 10 N -0.68 -14.49 6.48 -116.34 -0.75 -15.25 15 11 C 0.09 1.60 5.81 -4.97 -0.03 1.57 15 12 C -0.06 -0.91 5.39 -104.62 -0.56 -1.47 15 13 C -0.10 -1.25 9.70 -39.58 -0.38 -1.63 15 14 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 15 15 C -0.10 -1.09 9.76 -39.56 -0.39 -1.48 15 16 C -0.10 -1.26 6.20 -39.54 -0.25 -1.50 15 17 I -0.06 -0.62 40.27 -73.02 -2.94 -3.56 15 18 C -0.07 -0.93 9.41 -39.57 -0.37 -1.31 15 19 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 20 H -0.01 -0.34 8.14 -51.93 -0.42 -0.76 15 21 H 0.03 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.33 6.73 8.71 -39.29 -0.34 6.38 15 23 H 0.03 0.54 8.09 -51.93 -0.42 0.12 15 24 H 0.08 1.31 8.09 -51.93 -0.42 0.89 15 25 H 0.13 1.45 8.06 -52.49 -0.42 1.02 15 26 H 0.13 1.07 8.06 -52.49 -0.42 0.64 15 27 H 0.12 1.18 8.06 -52.49 -0.42 0.75 15 28 H 0.13 1.89 8.06 -52.49 -0.42 1.47 15 LS Contribution 276.96 15.07 4.17 4.17 Total: -1.00 -29.43 276.96 -9.89 -39.33 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -3.26 Total: 0.54 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -2.82 Total: -15.91 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: -0.02 Total: -41.23 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 53 Polarization: -0.62 SS G_CDS: -2.94 Total: -3.56 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.43 -9.89 -39.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308186689.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.207 kcal (2) G-P(sol) polarization free energy of solvation -29.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds