Wall clock time and date at job start Tue Mar 31 2020 11:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 119.99892 * 2 1 4 4 H 1.48501 * 109.47145 * 239.99822 * 3 2 1 5 5 H 1.48500 * 109.46967 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46824 * 119.99960 * 3 2 1 7 7 C 1.37881 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99681 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47041 * 179.97438 * 9 7 2 11 11 C 1.46903 * 111.00056 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47122 * 179.97438 * 11 10 9 13 13 C 1.38259 * 119.99953 * 270.28008 * 12 11 10 14 14 C 1.38220 * 120.01238 * 180.23541 * 13 12 11 15 15 C 1.38251 * 120.00620 * 359.48336 * 14 13 12 16 16 C 1.38275 * 119.99010 * 0.26296 * 15 14 13 17 17 I 2.09501 * 120.00390 * 179.97438 * 16 15 14 18 18 C 1.38206 * 119.99490 * 90.00328 * 12 11 10 19 19 H 0.97001 * 120.00453 * 0.02562 * 1 2 3 20 20 H 1.09007 * 109.47461 * 60.00144 * 9 7 2 21 21 H 1.09002 * 109.47196 * 300.00204 * 9 7 2 22 22 H 1.00896 * 111.00491 * 303.95468 * 10 9 7 23 23 H 1.09003 * 109.47382 * 60.00460 * 11 10 9 24 24 H 1.08998 * 109.47136 * 299.99917 * 11 10 9 25 25 H 1.08000 * 119.99351 * 359.97438 * 13 12 11 26 26 H 1.08002 * 119.99998 * 179.76943 * 14 13 12 27 27 H 1.07999 * 120.00432 * 180.23486 * 15 14 13 28 28 H 1.08002 * 120.00291 * 0.04002 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2056 -3.6156 -0.0018 11 6 1.5053 -4.9070 -0.0012 12 6 2.5149 -6.0259 -0.0031 13 6 2.9805 -6.5348 -1.2014 14 6 3.9028 -7.5643 -1.2035 15 6 4.3679 -8.0783 -0.0073 16 6 3.9063 -7.5659 1.1912 17 53 4.6104 -8.3450 3.0040 18 6 2.9795 -6.5394 1.1929 19 1 -0.4851 0.8400 -0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6247 -2.5570 0.8897 22 1 2.8399 -3.5483 -0.7835 23 1 0.8795 -4.9814 -0.8905 24 1 0.8815 -4.9816 0.8895 25 1 2.6204 -6.1307 -2.1359 26 1 4.2636 -7.9642 -2.1396 27 1 5.0914 -8.8801 -0.0090 28 1 2.6186 -6.1392 2.1289 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308186689.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:39 Heat of formation + Delta-G solvation = 12.441877 kcal Electronic energy + Delta-G solvation = -12308.768318 eV Core-core repulsion = 9989.577832 eV Total energy + Delta-G solvation = -2319.190486 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 316.997 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.44590 -37.14242 -34.78201 -33.26378 -32.29409 -29.17041 -28.61166 -26.00738 -23.50867 -23.22571 -21.79627 -18.66190 -17.61119 -16.88423 -16.56436 -15.94028 -15.53736 -15.16828 -14.69247 -14.11151 -13.93471 -13.85048 -13.29573 -13.14699 -12.75356 -12.61868 -12.20304 -11.87626 -11.76288 -11.35705 -11.24751 -10.85034 -10.66811 -9.85749 -9.71763 -9.14781 -8.23458 -6.34842 0.15546 0.16727 0.33921 1.41170 1.44606 1.52675 2.39313 2.65371 3.09854 3.62888 3.80976 3.97175 4.13305 4.27549 4.36001 4.51552 4.67245 4.85549 4.97972 5.06060 5.22022 5.27731 5.38152 5.57571 5.59936 5.88391 5.99698 6.39910 6.67184 6.86009 7.36005 8.87743 Molecular weight = 317.00amu Principal moments of inertia in cm(-1) A = 0.027962 B = 0.003328 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.112695 B = 8412.466930 C = 8977.539539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.209 3.791 10 N -0.684 5.684 11 C 0.097 3.903 12 C -0.080 4.080 13 C -0.101 4.101 14 C -0.109 4.109 15 C -0.090 4.090 16 C -0.109 4.109 17 I -0.041 7.041 18 C -0.079 4.079 19 H 0.266 0.734 20 H -0.035 1.035 21 H 0.001 0.999 22 H 0.336 0.664 23 H 0.036 0.964 24 H 0.066 0.934 25 H 0.137 0.863 26 H 0.162 0.838 27 H 0.148 0.852 28 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.924 -22.439 2.389 25.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.576 4.576 8 H 0.082 0.918 9 C 0.081 3.919 10 N -0.314 5.314 11 C -0.032 4.032 12 C -0.082 4.082 13 C -0.119 4.119 14 C -0.128 4.128 15 C -0.111 4.111 16 C -0.249 4.249 17 I 0.109 6.891 18 C -0.101 4.101 19 H 0.074 0.926 20 H -0.017 1.017 21 H 0.019 0.981 22 H 0.153 0.847 23 H 0.054 0.946 24 H 0.084 0.916 25 H 0.155 0.845 26 H 0.179 0.821 27 H 0.165 0.835 28 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.330 -22.856 4.355 25.879 hybrid contribution -0.885 1.484 -1.720 2.438 sum 10.445 -21.372 2.635 23.934 Atomic orbital electron populations 1.70073 1.07762 1.28128 1.51334 1.25943 0.95797 1.03348 0.94524 0.85391 0.78130 0.77650 0.79171 1.18992 1.20715 1.19451 1.21496 0.93781 0.91411 1.50880 0.91840 1.19220 0.90573 0.88640 0.93444 1.60582 1.20478 1.00908 1.49469 1.20858 0.93921 0.87712 1.00714 1.19866 0.98242 0.96402 0.93692 1.21438 0.96661 0.96256 0.97594 1.21476 0.96448 0.95951 0.98920 1.21343 0.99218 0.99743 0.90781 1.24316 1.02714 1.01472 0.96383 1.96758 1.86948 1.83820 1.21605 1.20961 0.95914 0.94859 0.98321 0.92552 1.01697 0.98116 0.84655 0.94554 0.91584 0.84472 0.82067 0.83467 0.86395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.39 13.29 21.45 0.28 -56.10 15 2 C 0.00 0.13 5.46 84.66 0.46 0.59 15 3 Si 0.97 44.32 29.54 68.60 2.03 46.34 15 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 15 5 H -0.28 -12.49 7.11 99.48 0.71 -11.79 15 6 H -0.27 -11.95 7.11 99.48 0.71 -11.25 15 7 C -0.54 -30.82 9.32 25.60 0.24 -30.58 15 8 H 0.06 3.54 7.81 -2.91 -0.02 3.52 15 9 C 0.21 11.22 5.44 85.56 0.47 11.68 15 10 N -0.68 -29.60 6.48 -521.98 -3.38 -32.98 15 11 C 0.10 3.43 5.81 85.56 0.50 3.93 15 12 C -0.08 -2.33 5.39 -19.87 -0.11 -2.44 15 13 C -0.10 -2.38 9.70 22.27 0.22 -2.16 15 14 C -0.11 -2.05 10.05 22.27 0.22 -1.83 15 15 C -0.09 -1.80 9.76 22.28 0.22 -1.58 15 16 C -0.11 -2.60 6.20 22.30 0.14 -2.46 15 17 I -0.04 -0.86 40.27 -18.82 -0.76 -1.62 15 18 C -0.08 -2.25 9.41 22.28 0.21 -2.04 15 19 H 0.27 15.08 8.31 -92.71 -0.77 14.31 15 20 H -0.03 -1.97 8.14 -2.38 -0.02 -1.99 15 21 H 0.00 0.04 8.14 -2.39 -0.02 0.02 15 22 H 0.34 13.78 8.71 -89.70 -0.78 13.00 15 23 H 0.04 1.25 8.09 -2.39 -0.02 1.23 15 24 H 0.07 2.41 8.09 -2.39 -0.02 2.40 15 25 H 0.14 2.88 8.06 -2.91 -0.02 2.86 15 26 H 0.16 1.95 8.06 -2.91 -0.02 1.93 15 27 H 0.15 2.24 8.06 -2.91 -0.02 2.22 15 28 H 0.12 3.53 8.06 -2.91 -0.02 3.51 15 Total: -1.00 -63.22 276.96 1.11 -62.11 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 0.37 Total: 9.14 kcal Atomic # 6 Polarization: -29.45 SS G_CDS: 2.56 Total: -26.89 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -3.10 Total: -89.08 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 53 Polarization: -0.86 SS G_CDS: -0.76 Total: -1.62 kcal Total: -63.22 1.11 -62.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308186689.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.549 kcal (2) G-P(sol) polarization free energy of solvation -63.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds