Wall clock time and date at job start Tue Mar 31 2020 11:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47154 * 2 1 4 4 C 1.50707 * 109.47146 * 240.00430 * 2 1 3 5 5 H 1.07998 * 119.99663 * 239.99768 * 4 2 1 6 6 C 1.37871 * 120.00027 * 59.99651 * 4 2 1 7 7 N 1.31516 * 120.00176 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99846 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47007 * 60.00181 * 8 6 4 10 10 H 1.48503 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48491 * 109.47204 * 300.00107 * 8 6 4 12 12 N 1.46897 * 109.47248 * 120.00158 * 2 1 3 13 13 C 1.46900 * 111.00208 * 274.99848 * 12 2 1 14 14 C 1.50700 * 109.47529 * 180.02562 * 13 12 2 15 15 C 1.38258 * 119.98335 * 89.99569 * 14 13 12 16 16 C 1.38209 * 120.03350 * 179.70235 * 15 14 13 17 17 C 1.38324 * 120.00565 * 0.28245 * 16 15 14 18 18 Br 1.89098 * 120.01686 * 179.97438 * 17 16 15 19 19 C 1.38416 * 119.96320 * 359.97438 * 17 16 15 20 20 Cl 1.73600 * 120.01777 * 180.02562 * 19 17 16 21 21 C 1.38211 * 119.97980 * 270.25786 * 14 13 12 22 22 H 1.09000 * 109.47154 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46732 * 299.99879 * 1 2 3 24 24 H 1.09002 * 109.47275 * 59.99697 * 1 2 3 25 25 H 0.97001 * 120.00100 * 180.02562 * 7 6 4 26 26 H 1.00901 * 111.00119 * 151.04762 * 12 2 1 27 27 H 1.09005 * 109.46810 * 59.99846 * 13 12 2 28 28 H 1.09002 * 109.47235 * 300.00543 * 13 12 2 29 29 H 1.08002 * 119.98624 * 359.97438 * 15 14 13 30 30 H 1.08005 * 120.00142 * 180.25952 * 16 15 14 31 31 H 1.07995 * 120.00630 * 0.02562 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.8258 -2.5201 -4.0078 10 1 1.8269 -0.4197 -5.2205 11 1 3.8063 -1.1208 -4.0083 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5886 -0.5216 3.5557 15 6 3.9452 -0.5732 3.8173 16 6 4.4100 -1.2501 4.9291 17 6 3.5184 -1.8814 5.7775 18 35 4.1541 -2.8082 7.2982 19 6 2.1606 -1.8342 5.5127 20 17 1.0402 -2.6254 6.5768 21 6 1.6967 -1.1566 4.3992 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 0.7088 1.1615 -3.4844 26 1 2.9173 -1.1205 1.0287 27 1 1.0871 0.6162 2.5525 28 1 2.7589 1.0462 2.1182 29 1 4.6418 -0.0806 3.1551 30 1 5.4696 -1.2865 5.1352 31 1 0.6375 -1.1199 4.1918 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308821719.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:40 Heat of formation + Delta-G solvation = 12.222456 kcal Electronic energy + Delta-G solvation = -15862.808372 eV Core-core repulsion = 13022.768003 eV Total energy + Delta-G solvation = -2840.040369 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.988 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.57847 -36.72874 -35.92436 -33.34880 -31.96248 -30.95653 -30.04511 -27.91083 -25.41925 -24.27760 -22.99851 -21.18805 -19.86048 -17.17838 -16.34787 -15.98438 -15.47476 -14.92867 -14.27184 -14.10167 -13.81578 -13.52707 -13.34175 -12.57611 -12.12840 -11.73496 -11.67996 -11.53756 -11.28802 -11.12875 -10.93360 -10.80397 -10.75417 -10.36499 -10.25953 -10.19305 -10.02012 -8.99030 -8.91483 -8.67155 -8.51962 -7.41492 -6.08397 -4.15440 0.85692 1.07731 1.36105 2.01910 3.27834 3.32667 3.35062 3.40105 4.35773 4.55547 4.76538 5.02823 5.15392 5.22786 5.27039 5.44044 5.59929 5.79938 5.93657 6.02701 6.09225 6.48894 6.59025 6.80173 7.05835 7.14047 7.39781 7.71143 7.80749 8.19143 8.26761 8.54872 8.93544 9.50912 10.97827 Molecular weight = 316.99amu Principal moments of inertia in cm(-1) A = 0.029125 B = 0.002970 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.127249 B = 9424.779455 C = 9847.684088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.212 3.788 3 H 0.003 0.997 4 C -0.521 4.521 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.681 5.681 13 C 0.091 3.909 14 C -0.036 4.036 15 C -0.107 4.107 16 C -0.081 4.081 17 C -0.096 4.096 18 Br -0.042 7.042 19 C -0.013 4.013 20 Cl -0.055 7.055 21 C -0.086 4.086 22 H 0.032 0.968 23 H 0.004 0.996 24 H 0.081 0.919 25 H 0.262 0.738 26 H 0.333 0.667 27 H 0.078 0.922 28 H 0.036 0.964 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.911 -4.015 19.987 21.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 H 0.021 0.979 4 C -0.560 4.560 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.313 5.313 13 C -0.038 4.038 14 C -0.037 4.037 15 C -0.126 4.126 16 C -0.100 4.100 17 C -0.177 4.177 18 Br 0.043 6.957 19 C -0.041 4.041 20 Cl -0.026 7.026 21 C -0.105 4.105 22 H 0.051 0.949 23 H 0.023 0.977 24 H 0.100 0.900 25 H 0.072 0.928 26 H 0.150 0.850 27 H 0.097 0.903 28 H 0.054 0.946 29 H 0.155 0.845 30 H 0.156 0.844 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.325 -4.548 20.659 21.813 hybrid contribution 0.811 0.195 -1.347 1.584 sum 6.136 -4.353 19.312 20.726 Atomic orbital electron populations 1.21729 0.97735 0.99470 0.99438 1.19145 0.92728 0.92383 0.85281 0.97940 1.21199 1.31749 1.12633 0.90376 0.92216 1.24907 0.94965 0.94956 0.99055 1.69881 1.36445 1.22796 1.23693 0.86571 0.79078 0.79824 0.82001 1.20141 1.21263 1.20302 1.60832 1.32305 1.32537 1.05612 1.20989 1.00513 0.93416 0.88867 1.20221 0.92740 0.95297 0.95490 1.21246 0.95546 0.99037 0.96790 1.21030 0.99297 0.96123 0.93597 1.21674 0.93450 1.05085 0.97451 1.96700 1.87851 1.75043 1.36064 1.20764 0.89082 0.99740 0.94555 1.98379 1.61259 1.78685 1.64290 1.21007 1.01409 0.96188 0.91940 0.94862 0.97680 0.89997 0.92786 0.84985 0.90345 0.94558 0.84541 0.84370 0.83876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.19 37.16 0.34 -2.67 16 2 C 0.21 5.13 2.60 -68.86 -0.18 4.95 16 3 H 0.00 0.08 7.80 -51.93 -0.40 -0.33 16 4 C -0.52 -13.86 8.59 -34.44 -0.30 -14.15 16 5 H 0.06 1.57 7.62 -52.49 -0.40 1.17 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.82 11.32 55.43 0.63 -24.19 16 8 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.68 -13.63 6.29 -109.22 -0.69 -14.32 16 13 C 0.09 1.49 5.61 -4.98 -0.03 1.46 16 14 C -0.04 -0.50 5.39 -104.62 -0.56 -1.07 16 15 C -0.11 -1.30 9.70 -39.58 -0.38 -1.68 16 16 C -0.08 -0.91 9.79 -39.56 -0.39 -1.30 16 17 C -0.10 -1.18 6.23 -39.48 -0.25 -1.43 16 18 Br -0.04 -0.46 32.53 -68.01 -2.21 -2.67 16 19 C -0.01 -0.16 6.32 -39.47 -0.25 -0.41 16 20 Cl -0.06 -0.68 27.75 -51.86 -1.44 -2.11 16 21 C -0.09 -1.16 9.49 -39.55 -0.38 -1.54 16 22 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 24 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 25 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 26 H 0.33 6.53 8.22 -39.29 -0.32 6.21 16 27 H 0.08 1.29 7.38 -51.93 -0.38 0.90 16 28 H 0.04 0.58 8.00 -51.93 -0.42 0.17 16 29 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 31 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 300.12 15.07 4.52 4.52 Total: -1.00 -27.19 300.12 -10.13 -37.31 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -3.45 Total: 1.88 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -2.46 Total: -16.23 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: -0.06 Total: -38.51 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.44 Total: -2.11 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -2.21 Total: -2.67 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.19 -10.13 -37.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308821719.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.537 kcal (2) G-P(sol) polarization free energy of solvation -27.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds