Wall clock time and date at job start Tue Mar 31 2020 11:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47154 * 2 1 4 4 C 1.50707 * 109.47146 * 240.00430 * 2 1 3 5 5 H 1.07998 * 119.99663 * 239.99768 * 4 2 1 6 6 C 1.37871 * 120.00027 * 59.99651 * 4 2 1 7 7 N 1.31516 * 120.00176 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99846 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47007 * 60.00181 * 8 6 4 10 10 H 1.48503 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48491 * 109.47204 * 300.00107 * 8 6 4 12 12 N 1.46897 * 109.47248 * 120.00158 * 2 1 3 13 13 C 1.46900 * 111.00208 * 274.99848 * 12 2 1 14 14 C 1.50700 * 109.47529 * 180.02562 * 13 12 2 15 15 C 1.38258 * 119.98335 * 89.99569 * 14 13 12 16 16 C 1.38209 * 120.03350 * 179.70235 * 15 14 13 17 17 C 1.38324 * 120.00565 * 0.28245 * 16 15 14 18 18 Br 1.89098 * 120.01686 * 179.97438 * 17 16 15 19 19 C 1.38416 * 119.96320 * 359.97438 * 17 16 15 20 20 Cl 1.73600 * 120.01777 * 180.02562 * 19 17 16 21 21 C 1.38211 * 119.97980 * 270.25786 * 14 13 12 22 22 H 1.09000 * 109.47154 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46732 * 299.99879 * 1 2 3 24 24 H 1.09002 * 109.47275 * 59.99697 * 1 2 3 25 25 H 0.97001 * 120.00100 * 180.02562 * 7 6 4 26 26 H 1.00901 * 111.00119 * 151.04762 * 12 2 1 27 27 H 1.09005 * 109.46810 * 59.99846 * 13 12 2 28 28 H 1.09002 * 109.47235 * 300.00543 * 13 12 2 29 29 H 1.08002 * 119.98624 * 359.97438 * 15 14 13 30 30 H 1.08005 * 120.00142 * 180.25952 * 16 15 14 31 31 H 1.07995 * 120.00630 * 0.02562 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.8258 -2.5201 -4.0078 10 1 1.8269 -0.4197 -5.2205 11 1 3.8063 -1.1208 -4.0083 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5886 -0.5216 3.5557 15 6 3.9452 -0.5732 3.8173 16 6 4.4100 -1.2501 4.9291 17 6 3.5184 -1.8814 5.7775 18 35 4.1541 -2.8082 7.2982 19 6 2.1606 -1.8342 5.5127 20 17 1.0402 -2.6254 6.5768 21 6 1.6967 -1.1566 4.3992 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 0.7088 1.1615 -3.4844 26 1 2.9173 -1.1205 1.0287 27 1 1.0871 0.6162 2.5525 28 1 2.7589 1.0462 2.1182 29 1 4.6418 -0.0806 3.1551 30 1 5.4696 -1.2865 5.1352 31 1 0.6375 -1.1199 4.1918 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308821719.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:37 Heat of formation + Delta-G solvation = -2.121556 kcal Electronic energy + Delta-G solvation = -15863.430375 eV Core-core repulsion = 13022.768003 eV Total energy + Delta-G solvation = -2840.662372 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.988 amu Computer time = 4.80 seconds Orbital eigenvalues (eV) -40.59826 -37.92030 -37.36197 -34.92496 -33.38226 -31.92490 -31.36517 -29.41186 -27.36107 -25.71269 -23.97068 -22.34717 -21.68698 -18.74086 -17.72007 -17.14970 -16.78357 -16.43666 -15.71496 -15.57459 -14.93748 -14.84310 -14.66084 -14.13888 -13.58542 -13.24187 -12.94353 -12.74759 -12.69628 -12.59333 -12.47189 -12.25521 -12.15447 -12.10737 -11.85344 -11.67301 -11.15943 -10.89735 -10.55936 -9.94237 -9.68829 -9.06521 -8.12377 -6.26321 -0.15079 0.10647 0.42255 1.04180 1.44337 1.45943 1.53294 2.36946 2.44774 3.16842 3.59067 3.61593 3.90522 4.11089 4.13748 4.25980 4.52218 4.71893 4.79990 4.84375 4.92639 5.03101 5.09699 5.22884 5.43978 5.47467 5.59764 5.67548 5.86848 6.23713 6.44685 6.75180 6.98946 7.44203 8.92896 Molecular weight = 316.99amu Principal moments of inertia in cm(-1) A = 0.029125 B = 0.002970 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.127249 B = 9424.779455 C = 9847.684088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.216 3.784 3 H -0.023 1.023 4 C -0.538 4.538 5 H 0.059 0.941 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.960 3.040 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.269 1.269 12 N -0.681 5.681 13 C 0.097 3.903 14 C -0.048 4.048 15 C -0.103 4.103 16 C -0.074 4.074 17 C -0.101 4.101 18 Br -0.029 7.029 19 C -0.022 4.022 20 Cl -0.052 7.052 21 C -0.092 4.092 22 H 0.026 0.974 23 H 0.024 0.976 24 H 0.056 0.944 25 H 0.263 0.737 26 H 0.335 0.665 27 H 0.074 0.926 28 H 0.039 0.961 29 H 0.152 0.848 30 H 0.165 0.835 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.174 -4.776 20.713 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.108 3.892 3 H -0.006 1.006 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.785 3.215 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.194 1.194 12 N -0.312 5.312 13 C -0.032 4.032 14 C -0.049 4.049 15 C -0.122 4.122 16 C -0.093 4.093 17 C -0.182 4.182 18 Br 0.057 6.943 19 C -0.051 4.051 20 Cl -0.023 7.023 21 C -0.112 4.112 22 H 0.045 0.955 23 H 0.043 0.957 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.153 0.847 27 H 0.092 0.908 28 H 0.057 0.943 29 H 0.170 0.830 30 H 0.183 0.817 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.595 -5.317 21.409 23.024 hybrid contribution 0.436 0.422 -1.459 1.580 sum 7.031 -4.894 19.951 21.712 Atomic orbital electron populations 1.21561 0.97785 0.98832 0.99177 1.18930 0.92692 0.91047 0.86544 1.00592 1.21555 1.31787 1.12746 0.91585 0.92234 1.25686 0.95153 0.95625 1.01934 1.70007 1.37381 1.24001 1.24241 0.85587 0.78823 0.78605 0.78461 1.19863 1.21063 1.19447 1.60694 1.32519 1.32964 1.04999 1.20916 1.00633 0.93194 0.88472 1.19978 0.93705 0.96313 0.94925 1.21424 0.94932 0.98678 0.97190 1.21313 1.00476 0.94901 0.92658 1.21910 0.93374 1.04906 0.98000 1.96718 1.87549 1.74737 1.35299 1.20816 0.89635 1.00008 0.94603 1.98378 1.61242 1.78575 1.64058 1.21007 1.01388 0.96508 0.92342 0.95497 0.95680 0.92485 0.92833 0.84739 0.90762 0.94260 0.83007 0.81741 0.84119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 9.19 71.98 0.66 -4.92 16 2 C 0.22 10.55 2.60 44.17 0.11 10.67 16 3 H -0.02 -1.25 7.80 -2.39 -0.02 -1.27 16 4 C -0.54 -28.68 8.59 25.60 0.22 -28.46 16 5 H 0.06 3.10 7.62 -2.91 -0.02 3.08 16 6 C 0.02 0.83 5.30 84.65 0.45 1.28 16 7 N -0.92 -51.71 11.32 21.45 0.24 -51.47 16 8 Si 0.96 42.49 29.54 68.60 2.03 44.52 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 10 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 12 N -0.68 -26.99 6.29 -499.45 -3.14 -30.14 16 13 C 0.10 3.10 5.61 85.56 0.48 3.58 16 14 C -0.05 -1.28 5.39 -19.87 -0.11 -1.39 16 15 C -0.10 -2.28 9.70 22.27 0.22 -2.06 16 16 C -0.07 -1.47 9.79 22.28 0.22 -1.25 16 17 C -0.10 -2.28 6.23 22.33 0.14 -2.14 16 18 Br -0.03 -0.57 32.53 -20.37 -0.66 -1.23 16 19 C -0.02 -0.54 6.32 22.34 0.14 -0.40 16 20 Cl -0.05 -1.20 27.75 -2.72 -0.08 -1.28 16 21 C -0.09 -2.43 9.49 22.29 0.21 -2.22 16 22 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.02 1.06 7.45 -2.39 -0.02 1.04 16 24 H 0.06 3.05 6.07 -2.39 -0.01 3.03 16 25 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 26 H 0.34 12.95 8.22 -89.69 -0.74 12.21 16 27 H 0.07 2.42 7.38 -2.38 -0.02 2.40 16 28 H 0.04 1.24 8.00 -2.39 -0.02 1.22 16 29 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 30 H 0.17 2.39 8.06 -2.91 -0.02 2.36 16 31 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -56.99 300.12 1.55 -55.45 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.41 Total: 11.45 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: 2.74 Total: -27.30 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -2.90 Total: -81.61 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -0.66 Total: -1.23 kcal Total: -56.99 1.55 -55.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308821719.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.324 kcal (2) G-P(sol) polarization free energy of solvation -56.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.81 seconds