Wall clock time and date at job start Tue Mar 31 2020 11:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42911 * 114.00031 * 2 1 4 4 C 1.52997 * 109.47160 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47034 * 65.00014 * 4 3 2 6 6 C 1.36970 * 120.00065 * 264.60116 * 5 4 3 7 7 H 1.08001 * 119.99473 * 126.80573 * 6 5 4 8 8 C 1.38969 * 120.00132 * 306.80320 * 6 5 4 9 9 N 1.31420 * 120.00117 * 4.20422 * 8 6 5 10 10 Si 1.86802 * 120.00115 * 184.19776 * 8 6 5 11 11 H 1.48501 * 109.46973 * 89.99878 * 10 8 6 12 12 H 1.48493 * 109.47157 * 210.00306 * 10 8 6 13 13 H 1.48503 * 109.47033 * 330.00500 * 10 8 6 14 14 C 1.34780 * 119.99681 * 84.60597 * 5 4 3 15 15 O 1.21653 * 119.99903 * 3.69508 * 14 5 4 16 16 C 1.47168 * 119.99620 * 183.96826 * 14 5 4 17 17 C 1.47077 * 127.21147 * 352.33655 * 16 14 5 18 18 C 1.34131 * 105.97940 * 179.86630 * 17 16 14 19 19 O 1.34271 * 109.18243 * 0.40441 * 18 17 16 20 20 C 1.33700 * 110.91674 * 359.72699 * 19 18 17 21 21 Br 1.89103 * 125.82980 * 180.02562 * 20 19 18 22 22 H 1.08997 * 109.46999 * 59.99320 * 1 2 3 23 23 H 1.08999 * 109.46819 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46719 * 299.99504 * 1 2 3 25 25 H 1.08997 * 109.46751 * 60.00363 * 3 2 1 26 26 H 1.08997 * 109.46771 * 300.00676 * 3 2 1 27 27 H 1.09002 * 109.47064 * 305.00132 * 4 3 2 28 28 H 1.08997 * 109.47210 * 184.99933 * 4 3 2 29 29 H 0.96991 * 119.99953 * 179.97438 * 9 8 6 30 30 H 1.08000 * 127.00963 * 0.02562 * 17 16 14 31 31 H 1.07997 * 125.40397 * 180.09290 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.2033 -0.7851 -1.3055 7 1 3.7195 -1.3851 -2.0621 8 6 5.0567 -1.3823 -0.3856 9 7 5.5805 -0.6678 0.5850 10 14 5.4593 -3.2009 -0.5287 11 1 6.6610 -3.3760 -1.3834 12 1 5.7274 -3.7562 0.8221 13 1 4.3096 -3.9159 -1.1387 14 6 4.1567 1.3220 -2.3528 15 8 4.0200 2.5292 -2.2892 16 6 4.5140 0.6881 -3.6320 17 6 4.8640 -0.7223 -3.8586 18 6 5.1090 -0.8354 -5.1725 19 8 4.9506 0.3636 -5.7557 20 6 4.5958 1.2882 -4.8574 21 35 4.2632 3.1140 -5.2203 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6887 1.8464 0.8900 26 1 1.6885 1.8464 -0.8899 27 1 3.8515 0.5683 0.8409 28 1 3.9785 2.1766 0.0889 29 1 6.1759 -1.0847 1.2273 30 1 4.9114 -1.5074 -3.1185 31 1 5.3938 -1.7453 -5.6798 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316487007.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:01 Heat of formation + Delta-G solvation = -34.691121 kcal Electronic energy + Delta-G solvation = -19422.295308 eV Core-core repulsion = 16139.511449 eV Total energy + Delta-G solvation = -3282.783859 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 317.010 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -41.90198 -38.49722 -36.89686 -34.71138 -32.39159 -31.63677 -31.43351 -29.16140 -28.12527 -25.84710 -24.92398 -23.10955 -21.44942 -20.28976 -19.08730 -17.95223 -16.06919 -15.86002 -15.73815 -15.46230 -15.16432 -14.60616 -14.34012 -14.13485 -13.68607 -13.20718 -12.57342 -12.32767 -12.07098 -11.86964 -11.59384 -11.23196 -11.07830 -10.97252 -10.77710 -10.56060 -10.38946 -10.06775 -10.04967 -9.09009 -9.00344 -8.90630 -8.52151 -8.07996 -7.30113 -6.32678 -4.17359 1.35507 1.82056 2.77938 3.12152 3.19820 3.21026 3.90006 4.06673 4.43419 4.50953 4.73352 5.00861 5.42461 5.66638 5.72569 5.77873 5.98933 6.00955 6.07488 6.14880 6.32549 6.35693 6.49132 6.78400 7.02315 7.29453 7.40508 7.47940 7.86424 8.10187 8.36829 9.06827 9.47633 9.91966 10.69993 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.014408 B = 0.006564 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.962612 B = 4264.609512 C = 5399.286581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.051 3.949 4 C 0.120 3.880 5 N -0.419 5.419 6 C -0.326 4.326 7 H 0.091 0.909 8 C 0.050 3.950 9 N -0.866 5.866 10 Si 0.907 3.093 11 H -0.274 1.274 12 H -0.281 1.281 13 H -0.266 1.266 14 C 0.536 3.464 15 O -0.587 6.587 16 C -0.131 4.131 17 C -0.160 4.160 18 C -0.059 4.059 19 O -0.175 6.175 20 C 0.001 3.999 21 Br 0.059 6.941 22 H 0.031 0.969 23 H 0.077 0.923 24 H 0.030 0.970 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.113 0.887 28 H 0.070 0.930 29 H 0.270 0.730 30 H 0.187 0.813 31 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.561 1.023 -7.542 8.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.027 4.027 4 C -0.003 4.003 5 N -0.137 5.137 6 C -0.455 4.455 7 H 0.108 0.892 8 C -0.156 4.156 9 N -0.502 5.502 10 Si 0.733 3.267 11 H -0.199 1.199 12 H -0.207 1.207 13 H -0.190 1.190 14 C 0.326 3.674 15 O -0.473 6.473 16 C -0.138 4.138 17 C -0.180 4.180 18 C -0.126 4.126 19 O -0.073 6.073 20 C -0.129 4.129 21 Br 0.142 6.858 22 H 0.049 0.951 23 H 0.096 0.904 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.131 0.869 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.204 0.796 31 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -3.477 2.148 -7.713 8.729 hybrid contribution 0.070 -1.296 0.279 1.328 sum -3.407 0.852 -7.434 8.221 Atomic orbital electron populations 1.22638 0.83463 1.01694 0.98821 1.88127 1.17340 1.27835 1.95045 1.23081 0.96715 0.84247 0.98654 1.21488 0.88787 0.99140 0.90920 1.42992 1.56475 1.07185 1.07035 1.19427 1.25647 0.82619 1.17778 0.89159 1.25561 0.95054 0.99440 0.95517 1.69745 1.29907 1.36572 1.14011 0.86255 0.79170 0.83058 0.78265 1.19950 1.20654 1.19037 1.17427 0.80476 0.85752 0.83789 1.90680 1.57032 1.13601 1.85978 1.21472 1.05056 0.93834 0.93439 1.24051 1.01362 0.96985 0.95584 1.24108 1.07769 0.86711 0.94009 1.83716 1.68703 1.17059 1.37795 1.23834 1.10177 0.89697 0.89186 1.96759 1.94165 0.98972 1.95870 0.95052 0.90448 0.95158 0.94235 0.94148 0.86891 0.91151 0.91985 0.79584 0.77792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.61 16 2 O -0.37 -7.72 10.43 -35.23 -0.37 -8.08 16 3 C 0.05 1.05 6.24 37.16 0.23 1.28 16 4 C 0.12 2.85 5.26 -4.04 -0.02 2.83 16 5 N -0.42 -10.54 2.42 -116.12 -0.28 -10.83 16 6 C -0.33 -8.07 6.28 -14.99 -0.09 -8.17 16 7 H 0.09 2.17 5.70 -52.49 -0.30 1.87 16 8 C 0.05 1.24 5.34 -17.46 -0.09 1.15 16 9 N -0.87 -22.54 11.35 55.50 0.63 -21.91 16 10 Si 0.91 18.80 29.04 -169.99 -4.94 13.86 16 11 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 12 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 13 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 14 C 0.54 13.46 7.58 -12.63 -0.10 13.36 16 15 O -0.59 -15.24 15.03 5.23 0.08 -15.16 16 16 C -0.13 -2.94 6.16 -103.25 -0.64 -3.58 16 17 C -0.16 -3.16 9.20 -37.44 -0.34 -3.50 16 18 C -0.06 -0.95 12.03 29.29 0.35 -0.60 16 19 O -0.17 -3.16 10.53 7.38 0.08 -3.08 16 20 C 0.00 0.02 7.86 30.17 0.24 0.26 16 21 Br 0.06 1.05 32.46 -68.01 -2.21 -1.16 16 22 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.11 2.87 5.94 -51.93 -0.31 2.56 16 28 H 0.07 1.68 7.54 -51.93 -0.39 1.29 16 29 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 30 H 0.19 3.72 4.59 -52.49 -0.24 3.48 16 31 H 0.21 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 290.38 15.07 4.38 4.38 Total: -1.00 -29.26 290.38 -4.89 -34.15 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -2.91 Total: 3.19 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 0.65 Total: 4.64 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.35 Total: -32.74 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.21 Total: -26.33 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -4.94 Total: 13.86 kcal Atomic # 35 Polarization: 1.05 SS G_CDS: -2.21 Total: -1.16 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.26 -4.89 -34.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316487007.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.538 kcal (2) G-P(sol) polarization free energy of solvation -29.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds