Wall clock time and date at job start Tue Mar 31 2020 11:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42911 * 114.00031 * 2 1 4 4 C 1.52997 * 109.47160 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47034 * 65.00014 * 4 3 2 6 6 C 1.36970 * 120.00065 * 264.60116 * 5 4 3 7 7 H 1.08001 * 119.99473 * 126.80573 * 6 5 4 8 8 C 1.38969 * 120.00132 * 306.80320 * 6 5 4 9 9 N 1.31420 * 120.00117 * 4.20422 * 8 6 5 10 10 Si 1.86802 * 120.00115 * 184.19776 * 8 6 5 11 11 H 1.48501 * 109.46973 * 89.99878 * 10 8 6 12 12 H 1.48493 * 109.47157 * 210.00306 * 10 8 6 13 13 H 1.48503 * 109.47033 * 330.00500 * 10 8 6 14 14 C 1.34780 * 119.99681 * 84.60597 * 5 4 3 15 15 O 1.21653 * 119.99903 * 3.69508 * 14 5 4 16 16 C 1.47168 * 119.99620 * 183.96826 * 14 5 4 17 17 C 1.47077 * 127.21147 * 352.33655 * 16 14 5 18 18 C 1.34131 * 105.97940 * 179.86630 * 17 16 14 19 19 O 1.34271 * 109.18243 * 0.40441 * 18 17 16 20 20 C 1.33700 * 110.91674 * 359.72699 * 19 18 17 21 21 Br 1.89103 * 125.82980 * 180.02562 * 20 19 18 22 22 H 1.08997 * 109.46999 * 59.99320 * 1 2 3 23 23 H 1.08999 * 109.46819 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46719 * 299.99504 * 1 2 3 25 25 H 1.08997 * 109.46751 * 60.00363 * 3 2 1 26 26 H 1.08997 * 109.46771 * 300.00676 * 3 2 1 27 27 H 1.09002 * 109.47064 * 305.00132 * 4 3 2 28 28 H 1.08997 * 109.47210 * 184.99933 * 4 3 2 29 29 H 0.96991 * 119.99953 * 179.97438 * 9 8 6 30 30 H 1.08000 * 127.00963 * 0.02562 * 17 16 14 31 31 H 1.07997 * 125.40397 * 180.09290 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.2033 -0.7851 -1.3055 7 1 3.7195 -1.3851 -2.0621 8 6 5.0567 -1.3823 -0.3856 9 7 5.5805 -0.6678 0.5850 10 14 5.4593 -3.2009 -0.5287 11 1 6.6610 -3.3760 -1.3834 12 1 5.7274 -3.7562 0.8221 13 1 4.3096 -3.9159 -1.1387 14 6 4.1567 1.3220 -2.3528 15 8 4.0200 2.5292 -2.2892 16 6 4.5140 0.6881 -3.6320 17 6 4.8640 -0.7223 -3.8586 18 6 5.1090 -0.8354 -5.1725 19 8 4.9506 0.3636 -5.7557 20 6 4.5958 1.2882 -4.8574 21 35 4.2632 3.1140 -5.2203 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6887 1.8464 0.8900 26 1 1.6885 1.8464 -0.8899 27 1 3.8515 0.5683 0.8409 28 1 3.9785 2.1766 0.0889 29 1 6.1759 -1.0847 1.2273 30 1 4.9114 -1.5074 -3.1185 31 1 5.3938 -1.7453 -5.6798 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316487007.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:59 Heat of formation + Delta-G solvation = -53.625294 kcal Electronic energy + Delta-G solvation = -19423.116355 eV Core-core repulsion = 16139.511449 eV Total energy + Delta-G solvation = -3283.604906 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 317.010 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -43.38155 -40.33134 -38.50383 -36.58275 -33.94760 -33.50749 -32.92260 -30.84823 -29.63562 -27.31453 -26.72406 -24.79858 -23.06217 -21.88122 -20.85465 -19.56062 -17.78648 -17.47688 -17.28174 -17.11764 -16.79317 -16.25150 -16.01625 -15.74726 -15.20725 -14.90616 -14.30600 -13.91256 -13.60509 -13.46241 -13.27899 -12.96818 -12.74712 -12.53935 -12.28143 -12.21760 -12.04007 -11.76593 -11.55592 -10.79546 -10.62235 -10.54305 -10.36184 -9.58370 -9.17944 -8.19033 -6.09489 -0.13306 0.23985 1.29893 1.50421 1.51131 1.61183 2.32800 2.50250 2.61623 2.90398 3.05879 3.18011 4.03495 4.13041 4.27283 4.42339 4.51689 4.54905 4.58066 4.64233 4.72822 4.82266 4.94907 5.03041 5.38488 5.53379 5.56754 5.93745 6.16587 6.42568 6.47034 7.17510 7.58911 8.03413 8.84214 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.014408 B = 0.006564 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.962612 B = 4264.609512 C = 5399.286581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.064 3.936 4 C 0.119 3.881 5 N -0.430 5.430 6 C -0.330 4.330 7 H 0.096 0.904 8 C 0.006 3.994 9 N -0.902 5.902 10 Si 0.972 3.028 11 H -0.263 1.263 12 H -0.288 1.288 13 H -0.253 1.253 14 C 0.522 3.478 15 O -0.610 6.610 16 C -0.169 4.169 17 C -0.192 4.192 18 C -0.018 4.018 19 O -0.166 6.166 20 C -0.004 4.004 21 Br 0.072 6.928 22 H 0.036 0.964 23 H 0.095 0.905 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.030 0.970 27 H 0.094 0.906 28 H 0.056 0.944 29 H 0.269 0.731 30 H 0.181 0.819 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.878 -0.711 -9.020 9.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.014 4.014 4 C -0.004 4.004 5 N -0.148 5.148 6 C -0.458 4.458 7 H 0.113 0.887 8 C -0.196 4.196 9 N -0.539 5.539 10 Si 0.795 3.205 11 H -0.188 1.188 12 H -0.214 1.214 13 H -0.177 1.177 14 C 0.313 3.687 15 O -0.498 6.498 16 C -0.177 4.177 17 C -0.211 4.211 18 C -0.085 4.085 19 O -0.063 6.063 20 C -0.134 4.134 21 Br 0.156 6.844 22 H 0.055 0.945 23 H 0.113 0.887 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.048 0.952 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.198 0.802 31 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -3.812 0.411 -9.207 9.973 hybrid contribution 0.127 -0.728 0.709 1.024 sum -3.685 -0.318 -8.498 9.268 Atomic orbital electron populations 1.22882 0.80670 1.03379 1.00144 1.88057 1.20427 1.27790 1.95302 1.22837 0.94592 0.84586 0.99368 1.21403 0.91067 0.97774 0.90177 1.43220 1.56575 1.07628 1.07337 1.19650 1.25735 0.82534 1.17834 0.88663 1.26369 0.94690 1.03655 0.94904 1.69889 1.30745 1.38402 1.14883 0.85258 0.79553 0.77791 0.77943 1.18758 1.21368 1.17693 1.17896 0.80253 0.85770 0.84825 1.90631 1.58142 1.14415 1.86585 1.21492 1.07342 0.95812 0.93013 1.23964 1.04113 0.95703 0.97337 1.25054 1.03454 0.87163 0.92849 1.83771 1.67928 1.17419 1.37203 1.23954 1.09784 0.90719 0.88975 1.96753 1.94085 0.97912 1.95635 0.94499 0.88655 0.92966 0.91490 0.95221 0.88783 0.92558 0.92132 0.80161 0.72054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.40 -16.63 10.43 -148.98 -1.55 -18.18 16 3 C 0.06 2.67 6.24 71.98 0.45 3.12 16 4 C 0.12 5.86 5.26 86.38 0.45 6.31 16 5 N -0.43 -22.18 2.42 -639.51 -1.55 -23.73 16 6 C -0.33 -16.43 6.28 84.07 0.53 -15.90 16 7 H 0.10 4.57 5.70 -2.91 -0.02 4.55 16 8 C 0.01 0.30 5.34 84.93 0.45 0.75 16 9 N -0.90 -48.00 11.35 21.67 0.25 -47.75 16 10 Si 0.97 38.03 29.04 68.60 1.99 40.03 16 11 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 12 H -0.29 -11.50 7.11 99.48 0.71 -10.79 16 13 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 14 C 0.52 26.83 7.58 86.59 0.66 27.48 16 15 O -0.61 -32.60 15.03 -4.20 -0.06 -32.66 16 16 C -0.17 -7.60 6.16 -18.98 -0.12 -7.72 16 17 C -0.19 -7.25 9.20 23.65 0.22 -7.03 16 18 C -0.02 -0.53 12.03 66.88 0.80 0.28 16 19 O -0.17 -5.53 10.53 3.50 0.04 -5.50 16 20 C 0.00 -0.15 7.86 67.46 0.53 0.38 16 21 Br 0.07 2.56 32.46 -20.37 -0.66 1.90 16 22 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 24 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.09 4.97 5.94 -2.39 -0.01 4.95 16 28 H 0.06 2.83 7.54 -2.39 -0.02 2.82 16 29 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 30 H 0.18 6.97 4.59 -2.91 -0.01 6.96 16 31 H 0.26 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -64.73 290.38 4.84 -59.89 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 1.17 Total: 16.31 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 5.23 Total: 9.69 kcal Atomic # 7 Polarization: -70.18 SS G_CDS: -1.30 Total: -71.48 kcal Atomic # 8 Polarization: -54.76 SS G_CDS: -1.58 Total: -56.34 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 1.99 Total: 40.03 kcal Atomic # 35 Polarization: 2.56 SS G_CDS: -0.66 Total: 1.90 kcal Total: -64.73 4.84 -59.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316487007.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.267 kcal (2) G-P(sol) polarization free energy of solvation -64.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds