Wall clock time and date at job start Tue Mar 31 2020 11:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33780 * 124.50438 * 2 1 4 4 C 1.37578 * 115.09904 * 179.72927 * 3 2 1 5 5 Br 1.89096 * 123.37487 * 180.33023 * 4 3 2 6 6 C 1.36754 * 113.24950 * 0.49089 * 4 3 2 7 7 C 1.46477 * 125.45889 * 179.79813 * 6 4 3 8 8 O 1.21712 * 120.00243 * 359.72536 * 7 6 4 9 9 N 1.34783 * 120.00160 * 179.72004 * 7 6 4 10 10 C 1.46494 * 120.00384 * 179.72909 * 9 7 6 11 11 H 1.09004 * 109.46687 * 35.27357 * 10 9 7 12 12 C 1.52998 * 109.46982 * 275.27567 * 10 9 7 13 13 C 1.50690 * 109.47448 * 155.27429 * 10 9 7 14 14 H 1.08010 * 120.00077 * 35.00619 * 13 10 9 15 15 C 1.37875 * 120.00575 * 214.99957 * 13 10 9 16 16 N 1.31507 * 120.00838 * 184.91339 * 15 13 10 17 17 Si 1.86802 * 119.99561 * 4.92029 * 15 13 10 18 18 H 1.48497 * 109.47562 * 84.83087 * 17 15 13 19 19 H 1.48500 * 109.47279 * 204.83188 * 17 15 13 20 20 H 1.48498 * 109.47101 * 324.82952 * 17 15 13 21 21 S 1.70610 * 124.50780 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.46782 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46790 * 300.02454 * 1 2 3 24 24 H 1.08999 * 109.47123 * 60.02111 * 1 2 3 25 25 H 1.08004 * 122.44921 * 0.02562 * 3 2 1 26 26 H 0.97000 * 119.99420 * 0.02562 * 9 7 6 27 27 H 1.09010 * 109.47030 * 55.03496 * 12 10 9 28 28 H 1.09003 * 109.47583 * 175.03207 * 12 10 9 29 29 H 1.08995 * 109.47327 * 295.03794 * 12 10 9 30 30 H 0.97002 * 120.01001 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2649 1.1025 0.0000 4 6 3.6221 0.8776 0.0059 5 35 4.9064 2.2655 0.0163 6 6 3.9494 -0.4502 -0.0001 7 6 5.3112 -0.9897 -0.0002 8 8 6.2652 -0.2339 0.0003 9 7 5.5078 -2.3231 -0.0007 10 6 6.8697 -2.8627 -0.0068 11 1 7.5192 -2.2163 0.5835 12 6 7.3860 -2.9277 -1.4455 13 6 6.8641 -4.2473 0.5879 14 1 6.0207 -4.9019 0.4244 15 6 7.9357 -4.6787 1.3407 16 7 7.9753 -5.9181 1.7785 17 14 9.3312 -3.5025 1.7388 18 1 8.9814 -2.7093 2.9445 19 1 10.5720 -4.2761 1.9981 20 1 9.5497 -2.5869 0.5903 21 16 2.4736 -1.4059 -0.0006 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5142 0.8898 24 1 -0.3633 0.5135 -0.8902 25 1 1.8420 2.0963 0.0004 26 1 4.7474 -2.9254 -0.0013 27 1 7.3075 -1.9421 -1.9046 28 1 8.4287 -3.2454 -1.4435 29 1 6.7898 -3.6417 -2.0137 30 1 8.7290 -6.2216 2.3084 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334576354.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:57 Heat of formation + Delta-G solvation = -27.595493 kcal Electronic energy + Delta-G solvation = -16262.436618 eV Core-core repulsion = 13422.713320 eV Total energy + Delta-G solvation = -2839.723298 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.77396 -38.95655 -36.70931 -34.43319 -33.53484 -32.01350 -31.00590 -28.25808 -27.34238 -24.29645 -23.40678 -21.63520 -20.57435 -19.32123 -18.48407 -17.49825 -16.88817 -16.27487 -16.11242 -15.48634 -14.99378 -14.76988 -14.53928 -14.31164 -14.05566 -13.70648 -13.52187 -13.15739 -13.04092 -12.85147 -12.76837 -12.45824 -12.05869 -11.88503 -11.66375 -11.50107 -11.26092 -10.85746 -10.50576 -10.01195 -9.65199 -9.52364 -8.40319 -6.46925 -0.71916 0.01612 0.63133 1.08461 1.14356 1.28988 1.33801 1.44210 2.12301 2.25804 2.29872 3.01753 3.71574 3.94918 4.03595 4.37084 4.44003 4.70203 4.75938 4.78211 4.80301 4.90376 5.01619 5.07342 5.24587 5.32379 5.43168 5.64917 6.08531 6.56431 6.75279 7.16675 7.29557 8.74418 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.017592 B = 0.005204 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.266372 B = 5379.464879 C = 6567.762876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.177 4.177 3 C -0.149 4.149 4 C -0.041 4.041 5 Br -0.015 7.015 6 C -0.280 4.280 7 C 0.565 3.435 8 O -0.556 6.556 9 N -0.699 5.699 10 C 0.236 3.764 11 H 0.034 0.966 12 C -0.141 4.141 13 C -0.528 4.528 14 H 0.058 0.942 15 C 0.038 3.962 16 N -0.926 5.926 17 Si 0.923 3.077 18 H -0.275 1.275 19 H -0.275 1.275 20 H -0.255 1.255 21 S 0.278 5.722 22 H 0.083 0.917 23 H 0.098 0.902 24 H 0.100 0.900 25 H 0.173 0.827 26 H 0.399 0.601 27 H 0.037 0.963 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.041 15.086 -4.505 23.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.298 4.298 3 C -0.179 4.179 4 C -0.138 4.138 5 Br 0.070 6.930 6 C -0.403 4.403 7 C 0.351 3.649 8 O -0.437 6.437 9 N -0.348 5.348 10 C 0.133 3.867 11 H 0.052 0.948 12 C -0.200 4.200 13 C -0.566 4.566 14 H 0.077 0.923 15 C -0.163 4.163 16 N -0.565 5.565 17 Si 0.748 3.252 18 H -0.201 1.201 19 H -0.201 1.201 20 H -0.180 1.180 21 S 0.546 5.454 22 H 0.102 0.898 23 H 0.117 0.883 24 H 0.118 0.882 25 H 0.191 0.809 26 H 0.234 0.766 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.074 14.400 -4.398 22.024 hybrid contribution 0.810 1.107 0.421 1.434 sum -15.264 15.507 -3.977 22.119 Atomic orbital electron populations 1.20607 0.83789 1.04769 1.05168 1.24733 1.03544 0.96563 1.04964 1.19840 0.89057 1.01933 1.07027 1.21528 0.95322 0.91716 1.05199 1.96699 1.56230 1.43029 1.97058 1.24571 0.98928 0.97776 1.19063 1.17362 0.87409 0.82935 0.77181 1.90827 1.42770 1.58271 1.51847 1.46324 1.10514 1.05256 1.72755 1.18945 0.80443 0.92780 0.94524 0.94841 1.22113 1.00822 0.99606 0.97436 1.21141 1.05436 0.97617 1.32394 0.92342 1.25543 1.00082 0.96134 0.94532 1.69958 1.32646 1.17125 1.36733 0.86108 0.79699 0.79659 0.79732 1.20113 1.20067 1.17957 1.83087 0.90716 1.06287 1.65346 0.89797 0.88343 0.88172 0.80916 0.76612 0.94406 0.93021 0.92289 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 10.33 71.24 0.74 -0.03 16 2 C -0.18 -3.11 6.28 24.67 0.15 -2.96 16 3 C -0.15 -3.12 9.88 21.10 0.21 -2.91 16 4 C -0.04 -1.19 6.29 21.77 0.14 -1.06 16 5 Br -0.02 -0.47 31.69 -20.37 -0.65 -1.11 16 6 C -0.28 -9.03 6.45 24.07 0.16 -8.88 16 7 C 0.57 23.06 7.74 86.39 0.67 23.73 16 8 O -0.56 -25.97 14.38 -4.39 -0.06 -26.04 16 9 N -0.70 -29.14 5.07 -450.28 -2.28 -31.42 16 10 C 0.24 11.36 2.22 44.24 0.10 11.46 16 11 H 0.03 1.76 4.73 -2.39 -0.01 1.74 16 12 C -0.14 -6.15 9.46 71.98 0.68 -5.47 16 13 C -0.53 -28.58 9.05 25.60 0.23 -28.35 16 14 H 0.06 3.35 8.06 -2.91 -0.02 3.32 16 15 C 0.04 2.14 5.47 84.66 0.46 2.60 16 16 N -0.93 -54.87 13.96 21.45 0.30 -54.57 16 17 Si 0.92 44.75 26.99 68.60 1.85 46.61 16 18 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 20 H -0.26 -12.13 6.82 99.48 0.68 -11.45 16 21 S 0.28 6.23 22.08 -56.49 -1.25 4.99 16 22 H 0.08 0.60 8.11 -2.39 -0.02 0.59 16 23 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 26 H 0.40 14.78 7.70 -92.71 -0.71 14.06 16 27 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -67.39 294.04 1.88 -65.50 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 0.43 Total: 7.90 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 3.53 Total: -11.86 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -1.98 Total: -85.99 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.06 Total: -26.04 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.85 Total: 46.61 kcal Atomic # 16 Polarization: 6.23 SS G_CDS: -1.25 Total: 4.99 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -0.65 Total: -1.11 kcal Total: -67.39 1.88 -65.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334576354.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.909 kcal (2) G-P(sol) polarization free energy of solvation -67.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds