Wall clock time and date at job start Tue Mar 31 2020 11:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99908 * 2 1 4 4 H 1.48499 * 109.47279 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47539 * 119.99978 * 3 2 1 6 6 H 1.48501 * 109.47023 * 239.99768 * 3 2 1 7 7 C 1.37875 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00099 * 14.37415 * 7 2 1 9 9 C 1.50704 * 119.99930 * 194.36598 * 7 2 1 10 10 O 1.42894 * 112.93849 * 65.60231 * 9 7 2 11 11 C 1.53939 * 113.73563 * 294.03550 * 9 7 2 12 12 N 1.48191 * 86.10040 * 221.95692 * 11 9 7 13 13 C 1.46901 * 111.06779 * 137.51768 * 12 11 9 14 14 C 1.50702 * 109.46700 * 90.56710 * 13 12 11 15 15 C 1.33359 * 125.19155 * 90.00313 * 14 13 12 16 16 C 1.38458 * 114.92873 * 179.97438 * 15 14 13 17 17 C 1.33482 * 114.89281 * 359.97438 * 16 15 14 18 18 Br 1.89102 * 125.20810 * 179.97438 * 17 16 15 19 19 S 1.75884 * 125.19229 * 269.68924 * 14 13 12 20 20 C 1.47962 * 90.79927 * 24.59877 * 12 11 9 21 21 H 0.96997 * 119.99760 * 174.86596 * 1 2 3 22 22 H 0.96707 * 114.00278 * 305.72643 * 10 9 7 23 23 H 1.09000 * 113.75435 * 336.23704 * 11 9 7 24 24 H 1.08991 * 113.75916 * 107.59925 * 11 9 7 25 25 H 1.08997 * 109.47354 * 210.56515 * 13 12 11 26 26 H 1.08996 * 109.47349 * 330.57028 * 13 12 11 27 27 H 1.08001 * 122.53960 * 0.02562 * 15 14 13 28 28 H 1.07997 * 122.55379 * 180.02562 * 16 15 14 29 29 H 1.08999 * 113.75796 * 221.08032 * 20 12 11 30 30 H 1.09006 * 113.85766 * 89.73095 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 1.4899 -2.1148 -0.2312 9 6 3.4762 -1.2143 0.3244 10 8 3.7552 -0.8306 1.6723 11 6 4.3501 -0.4940 -0.7184 12 7 5.2901 -1.6295 -0.5662 13 6 5.8069 -2.0656 -1.8703 14 6 7.0734 -1.3123 -2.1860 15 6 8.3041 -1.7052 -1.8554 16 6 9.3167 -0.8486 -2.2526 17 6 8.9070 0.2405 -2.9067 18 35 10.0381 1.5993 -3.5776 19 16 7.1545 0.2156 -3.0536 20 6 4.1889 -2.5071 -0.1119 21 1 -0.4849 -0.8367 -0.0752 22 1 3.3824 0.0259 1.9226 23 1 3.8934 -0.4314 -1.7061 24 1 4.7509 0.4588 -0.3726 25 1 6.0183 -3.1344 -1.8384 26 1 5.0632 -1.8651 -2.6414 27 1 8.4966 -2.6228 -1.3191 28 1 10.3587 -1.0468 -2.0494 29 1 4.4612 -3.1598 0.7175 30 1 3.6839 -3.0355 -0.9206 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334615082.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:42 Heat of formation + Delta-G solvation = 29.736927 kcal Electronic energy + Delta-G solvation = -16460.042698 eV Core-core repulsion = 13622.805520 eV Total energy + Delta-G solvation = -2837.237178 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.50160 -37.84168 -34.75839 -32.56095 -32.29079 -30.46133 -27.47081 -25.67261 -25.31565 -23.44651 -21.65070 -19.18351 -19.09504 -17.94056 -17.13612 -15.72542 -15.60553 -15.20366 -14.86155 -13.81956 -13.62841 -13.34259 -13.33266 -12.92512 -12.55706 -12.37670 -12.10495 -11.58834 -11.33483 -11.03722 -10.92543 -10.75417 -10.57463 -10.41362 -10.30281 -9.76012 -9.37702 -8.93949 -8.68893 -8.54332 -8.40502 -8.08799 -6.66875 -4.40665 0.74224 1.00912 1.71768 1.89089 2.59122 3.15975 3.26351 3.41308 4.24022 4.46857 4.75700 4.95633 5.19136 5.25735 5.36685 5.47822 5.58938 5.73231 5.77616 5.88686 6.06737 6.12949 6.31235 6.33720 6.46131 6.78837 6.90824 7.55667 7.67521 8.12278 8.62291 8.84618 9.34450 10.68339 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.024645 B = 0.003905 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.844099 B = 7168.902296 C = 7865.319765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.036 3.964 3 Si 1.041 2.959 4 H -0.281 1.281 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.620 4.620 8 H 0.065 0.935 9 C 0.207 3.793 10 O -0.564 6.564 11 C -0.038 4.038 12 N -0.469 5.469 13 C 0.080 3.920 14 C -0.129 4.129 15 C -0.138 4.138 16 C -0.084 4.084 17 C -0.218 4.218 18 Br -0.003 7.003 19 S 0.157 5.843 20 C 0.026 3.974 21 H 0.272 0.728 22 H 0.364 0.636 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.147 0.853 28 H 0.145 0.855 29 H 0.081 0.919 30 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.428 0.820 -8.437 21.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.171 4.171 3 Si 0.869 3.131 4 H -0.207 1.207 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.658 4.658 8 H 0.083 0.917 9 C 0.166 3.834 10 O -0.372 6.372 11 C -0.167 4.167 12 N -0.191 5.191 13 C -0.051 4.051 14 C -0.248 4.248 15 C -0.169 4.169 16 C -0.118 4.118 17 C -0.415 4.415 18 Br 0.081 6.919 19 S 0.420 5.580 20 C -0.102 4.102 21 H 0.082 0.918 22 H 0.213 0.787 23 H 0.092 0.908 24 H 0.090 0.910 25 H 0.109 0.891 26 H 0.075 0.925 27 H 0.164 0.836 28 H 0.162 0.838 29 H 0.100 0.900 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 19.465 3.430 -8.905 21.678 hybrid contribution 0.118 -2.467 0.021 2.470 sum 19.583 0.962 -8.884 21.525 Atomic orbital electron populations 1.70822 1.06859 1.31285 1.43435 1.25812 0.96283 1.02472 0.92575 0.84119 0.75247 0.76068 0.77627 1.20659 1.20543 1.19962 1.22320 0.93351 0.96424 1.53679 0.91673 1.20253 0.93047 0.90299 0.79767 1.86357 1.79363 1.41289 1.30154 1.25215 0.94059 0.95561 1.01886 1.68639 1.24900 1.05717 1.19889 1.21259 0.91624 0.98287 0.93900 1.24676 0.99193 0.98386 1.02593 1.19986 0.90662 1.02363 1.03904 1.20158 1.01282 0.92576 0.97831 1.25995 0.98684 1.01948 1.14832 1.96658 1.62301 1.47340 1.85638 1.84537 0.98279 1.20440 1.54713 1.23929 0.90226 0.96767 0.99285 0.91758 0.78738 0.90809 0.90966 0.89103 0.92531 0.83561 0.83767 0.90015 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.70 55.43 0.76 -25.25 16 2 C 0.04 0.98 5.44 -17.82 -0.10 0.88 16 3 Si 1.04 23.63 24.55 -169.99 -4.17 19.46 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.28 -5.80 5.81 56.52 0.33 -5.47 16 6 H -0.27 -5.81 6.48 56.52 0.37 -5.44 16 7 C -0.62 -16.63 9.04 -34.44 -0.31 -16.94 16 8 H 0.07 1.87 8.06 -52.49 -0.42 1.45 16 9 C 0.21 4.86 1.07 -90.83 -0.10 4.76 16 10 O -0.56 -13.59 13.47 -35.23 -0.47 -14.07 16 11 C -0.04 -0.80 4.74 -2.63 -0.01 -0.82 16 12 N -0.47 -8.88 6.14 -239.47 -1.47 -10.35 16 13 C 0.08 1.22 5.29 -4.97 -0.03 1.20 16 14 C -0.13 -1.86 6.07 -36.01 -0.22 -2.08 16 15 C -0.14 -1.77 10.05 -41.21 -0.41 -2.18 16 16 C -0.08 -1.01 10.11 -41.16 -0.42 -1.42 16 17 C -0.22 -2.79 6.97 29.07 0.20 -2.59 16 18 Br 0.00 -0.03 34.07 -68.01 -2.32 -2.35 16 19 S 0.16 2.22 23.33 -107.50 -2.51 -0.29 16 20 C 0.03 0.53 7.34 -2.76 -0.02 0.51 16 21 H 0.27 7.91 8.73 -40.82 -0.36 7.55 16 22 H 0.36 8.26 6.06 45.56 0.28 8.54 16 23 H 0.07 1.56 7.32 -51.93 -0.38 1.18 16 24 H 0.07 1.52 6.86 -51.93 -0.36 1.17 16 25 H 0.09 1.21 8.08 -51.93 -0.42 0.79 16 26 H 0.06 0.87 7.39 -51.93 -0.38 0.49 16 27 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 30 H 0.07 1.39 7.88 -51.93 -0.41 0.98 16 LS Contribution 285.38 15.07 4.30 4.30 Total: -1.00 -28.80 285.38 -9.92 -38.72 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -2.62 Total: 8.51 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -1.41 Total: -18.68 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: -0.71 Total: -35.60 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.47 Total: -14.07 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -4.17 Total: 19.46 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.51 Total: -0.29 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -2.32 Total: -2.35 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.80 -9.92 -38.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334615082.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.455 kcal (2) G-P(sol) polarization free energy of solvation -28.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds