Wall clock time and date at job start Tue Mar 31 2020 11:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99908 * 2 1 4 4 H 1.48499 * 109.47279 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47539 * 119.99978 * 3 2 1 6 6 H 1.48501 * 109.47023 * 239.99768 * 3 2 1 7 7 C 1.37875 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00099 * 14.37415 * 7 2 1 9 9 C 1.50704 * 119.99930 * 194.36598 * 7 2 1 10 10 O 1.42894 * 112.93849 * 65.60231 * 9 7 2 11 11 C 1.53939 * 113.73563 * 294.03550 * 9 7 2 12 12 N 1.48191 * 86.10040 * 221.95692 * 11 9 7 13 13 C 1.46901 * 111.06779 * 137.51768 * 12 11 9 14 14 C 1.50702 * 109.46700 * 90.56710 * 13 12 11 15 15 C 1.33359 * 125.19155 * 90.00313 * 14 13 12 16 16 C 1.38458 * 114.92873 * 179.97438 * 15 14 13 17 17 C 1.33482 * 114.89281 * 359.97438 * 16 15 14 18 18 Br 1.89102 * 125.20810 * 179.97438 * 17 16 15 19 19 S 1.75884 * 125.19229 * 269.68924 * 14 13 12 20 20 C 1.47962 * 90.79927 * 24.59877 * 12 11 9 21 21 H 0.96997 * 119.99760 * 174.86596 * 1 2 3 22 22 H 0.96707 * 114.00278 * 305.72643 * 10 9 7 23 23 H 1.09000 * 113.75435 * 336.23704 * 11 9 7 24 24 H 1.08991 * 113.75916 * 107.59925 * 11 9 7 25 25 H 1.08997 * 109.47354 * 210.56515 * 13 12 11 26 26 H 1.08996 * 109.47349 * 330.57028 * 13 12 11 27 27 H 1.08001 * 122.53960 * 0.02562 * 15 14 13 28 28 H 1.07997 * 122.55379 * 180.02562 * 16 15 14 29 29 H 1.08999 * 113.75796 * 221.08032 * 20 12 11 30 30 H 1.09006 * 113.85766 * 89.73095 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 1.4899 -2.1148 -0.2312 9 6 3.4762 -1.2143 0.3244 10 8 3.7552 -0.8306 1.6723 11 6 4.3501 -0.4940 -0.7184 12 7 5.2901 -1.6295 -0.5662 13 6 5.8069 -2.0656 -1.8703 14 6 7.0734 -1.3123 -2.1860 15 6 8.3041 -1.7052 -1.8554 16 6 9.3167 -0.8486 -2.2526 17 6 8.9070 0.2405 -2.9067 18 35 10.0381 1.5993 -3.5776 19 16 7.1545 0.2156 -3.0536 20 6 4.1889 -2.5071 -0.1119 21 1 -0.4849 -0.8367 -0.0752 22 1 3.3824 0.0259 1.9226 23 1 3.8934 -0.4314 -1.7061 24 1 4.7509 0.4588 -0.3726 25 1 6.0183 -3.1344 -1.8384 26 1 5.0632 -1.8651 -2.6414 27 1 8.4966 -2.6228 -1.3191 28 1 10.3587 -1.0468 -2.0494 29 1 4.4612 -3.1598 0.7175 30 1 3.6839 -3.0355 -0.9206 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334615082.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:39 Heat of formation + Delta-G solvation = 7.819173 kcal Electronic energy + Delta-G solvation = -16460.993123 eV Core-core repulsion = 13622.805520 eV Total energy + Delta-G solvation = -2838.187603 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -41.09736 -38.87827 -36.48080 -34.65159 -33.39253 -31.64812 -28.99974 -27.26457 -26.84284 -24.69268 -23.06853 -20.93304 -20.12994 -19.91908 -18.25326 -17.45270 -16.97910 -16.52834 -16.48004 -15.29269 -15.23799 -14.90424 -14.52529 -14.19173 -13.86700 -13.84210 -13.56675 -13.14134 -12.75417 -12.57395 -12.29383 -12.16164 -11.89531 -11.76855 -11.60348 -11.32040 -11.19957 -10.91692 -10.32965 -9.83356 -9.58013 -9.52611 -8.82721 -6.59653 -0.26011 0.04111 0.74676 0.88491 1.36229 1.44937 1.60993 1.63910 2.35502 2.89446 2.95647 3.54647 3.76342 3.93664 4.04214 4.18193 4.26058 4.36788 4.53555 4.59098 4.66873 4.83278 4.91674 5.14250 5.18062 5.24098 5.40756 5.68344 5.87931 6.05202 6.39222 7.00395 7.24733 8.49906 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.024645 B = 0.003905 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.844099 B = 7168.902296 C = 7865.319765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.007 4.007 3 Si 1.072 2.928 4 H -0.287 1.287 5 H -0.248 1.248 6 H -0.250 1.250 7 C -0.625 4.625 8 H 0.030 0.970 9 C 0.189 3.811 10 O -0.570 6.570 11 C -0.027 4.027 12 N -0.465 5.465 13 C 0.081 3.919 14 C -0.150 4.150 15 C -0.127 4.127 16 C -0.082 4.082 17 C -0.220 4.220 18 Br 0.012 6.988 19 S 0.123 5.877 20 C 0.032 3.968 21 H 0.258 0.742 22 H 0.367 0.633 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.114 0.886 26 H 0.054 0.946 27 H 0.167 0.833 28 H 0.171 0.829 29 H 0.088 0.912 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.414 1.093 -8.633 24.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.207 4.207 3 Si 0.893 3.107 4 H -0.213 1.213 5 H -0.173 1.173 6 H -0.174 1.174 7 C -0.663 4.663 8 H 0.048 0.952 9 C 0.148 3.852 10 O -0.378 6.378 11 C -0.156 4.156 12 N -0.187 5.187 13 C -0.049 4.049 14 C -0.269 4.269 15 C -0.158 4.158 16 C -0.116 4.116 17 C -0.417 4.417 18 Br 0.096 6.904 19 S 0.387 5.613 20 C -0.097 4.097 21 H 0.067 0.933 22 H 0.217 0.783 23 H 0.088 0.912 24 H 0.094 0.906 25 H 0.132 0.868 26 H 0.072 0.928 27 H 0.184 0.816 28 H 0.188 0.812 29 H 0.106 0.894 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 22.469 3.675 -9.102 24.519 hybrid contribution -0.764 -2.635 0.061 2.745 sum 21.705 1.040 -9.041 23.536 Atomic orbital electron populations 1.70951 1.08152 1.30454 1.46342 1.27146 0.96114 1.06027 0.91455 0.83788 0.74940 0.72002 0.80012 1.21288 1.17288 1.17429 1.22508 0.95662 0.95070 1.53021 0.95191 1.20396 0.91382 0.93385 0.80049 1.86341 1.79186 1.41757 1.30526 1.24971 0.93815 0.96309 1.00490 1.68567 1.23531 1.04409 1.22221 1.21266 0.92009 0.99799 0.91795 1.24564 0.99266 0.98715 1.04360 1.20293 0.90129 1.02786 1.02567 1.20459 1.02443 0.91821 0.96862 1.26169 0.97968 1.02698 1.14838 1.96678 1.61444 1.46823 1.85498 1.84618 1.00083 1.21108 1.55533 1.23882 0.90333 0.95762 0.99689 0.93318 0.78326 0.91245 0.90606 0.86807 0.92809 0.81608 0.81167 0.89398 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.49 13.70 21.45 0.29 -55.20 16 2 C -0.01 -0.37 5.44 84.65 0.46 0.09 16 3 Si 1.07 46.65 24.55 68.60 1.68 48.33 16 4 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.25 -9.51 5.81 99.48 0.58 -8.93 16 6 H -0.25 -9.88 6.48 99.48 0.64 -9.23 16 7 C -0.62 -34.05 9.04 25.60 0.23 -33.82 16 8 H 0.03 1.79 8.06 -2.91 -0.02 1.76 16 9 C 0.19 8.67 1.07 -10.89 -0.01 8.66 16 10 O -0.57 -26.65 13.47 -148.98 -2.01 -28.66 16 11 C -0.03 -1.07 4.74 86.37 0.41 -0.66 16 12 N -0.46 -16.52 6.14 -914.74 -5.62 -22.14 16 13 C 0.08 2.30 5.29 85.56 0.45 2.75 16 14 C -0.15 -3.93 6.07 24.58 0.15 -3.78 16 15 C -0.13 -2.79 10.05 21.22 0.21 -2.58 16 16 C -0.08 -1.67 10.11 21.24 0.21 -1.46 16 17 C -0.22 -5.06 6.97 66.74 0.47 -4.59 16 18 Br 0.01 0.24 34.07 -20.37 -0.69 -0.46 16 19 S 0.12 3.25 23.33 -56.49 -1.32 1.94 16 20 C 0.03 1.23 7.34 86.41 0.63 1.87 16 21 H 0.26 15.68 8.73 -92.71 -0.81 14.87 16 22 H 0.37 16.08 6.06 -74.05 -0.45 15.63 16 23 H 0.07 2.83 7.32 -2.39 -0.02 2.82 16 24 H 0.08 3.00 6.86 -2.39 -0.02 2.98 16 25 H 0.11 2.68 8.08 -2.39 -0.02 2.66 16 26 H 0.05 1.57 7.39 -2.39 -0.02 1.55 16 27 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 28 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 29 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 30 H 0.08 2.93 7.88 -2.38 -0.02 2.91 16 Total: -1.00 -62.04 285.38 -3.95 -65.98 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 0.49 Total: 23.74 kcal Atomic # 6 Polarization: -36.75 SS G_CDS: 3.22 Total: -33.53 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: -5.33 Total: -77.34 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -2.01 Total: -28.66 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.68 Total: 48.33 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -1.32 Total: 1.94 kcal Atomic # 35 Polarization: 0.24 SS G_CDS: -0.69 Total: -0.46 kcal Total: -62.04 -3.95 -65.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334615082.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.804 kcal (2) G-P(sol) polarization free energy of solvation -62.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds