Wall clock time and date at job start Tue Mar 31 2020 11:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 S 1.70622 * 124.52160 * 2 1 4 4 C 1.75829 * 91.57288 * 179.97438 * 3 2 1 5 5 C 1.46573 * 125.44920 * 179.97438 * 4 3 2 6 6 O 1.21700 * 120.00123 * 180.02562 * 5 4 3 7 7 N 1.34780 * 120.00100 * 0.02562 * 5 4 3 8 8 C 1.46501 * 119.99971 * 179.97438 * 7 5 4 9 9 H 1.09007 * 109.46981 * 35.00260 * 8 7 5 10 10 C 1.53001 * 109.47468 * 275.00640 * 8 7 5 11 11 C 1.50693 * 109.47055 * 155.00194 * 8 7 5 12 12 H 1.08004 * 120.00305 * 0.02562 * 11 8 7 13 13 C 1.37879 * 120.00001 * 180.02562 * 11 8 7 14 14 N 1.31509 * 120.00382 * 359.97438 * 13 11 8 15 15 Si 1.86804 * 119.99776 * 180.02562 * 13 11 8 16 16 H 1.48496 * 109.47192 * 90.00096 * 15 13 11 17 17 H 1.48504 * 109.46753 * 209.99426 * 15 13 11 18 18 H 1.48499 * 109.47323 * 329.99554 * 15 13 11 19 19 C 1.36660 * 109.09528 * 0.02562 * 4 3 2 20 20 C 1.33867 * 124.52459 * 179.97438 * 2 1 3 21 21 Br 1.89102 * 122.45209 * 0.02562 * 20 2 1 22 22 H 1.09003 * 109.47263 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47524 * 120.02270 * 1 2 3 24 24 H 1.09001 * 109.47003 * 240.02753 * 1 2 3 25 25 H 0.96995 * 120.00342 * 0.02562 * 7 5 4 26 26 H 1.08996 * 109.47093 * 180.02562 * 10 8 7 27 27 H 1.08999 * 109.47006 * 299.99751 * 10 8 7 28 28 H 1.08997 * 109.47112 * 59.99733 * 10 8 7 29 29 H 0.96998 * 120.00545 * 180.02562 * 14 13 11 30 30 H 1.08001 * 123.35402 * 180.02562 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.4739 1.4058 0.0000 4 6 3.9494 0.4495 0.0008 5 6 5.3121 0.9891 0.0006 6 8 6.2659 0.2332 0.0007 7 7 5.5090 2.3224 0.0003 8 6 6.8711 2.8618 0.0007 9 1 7.5191 2.2126 -0.5884 10 6 7.3912 2.9329 1.4379 11 6 6.8643 4.2437 -0.6001 12 1 5.9380 4.6772 -0.9471 13 6 8.0408 4.9548 -0.7067 14 7 9.1687 4.4273 -0.2838 15 14 8.0322 6.6683 -1.4508 16 1 7.8126 7.6723 -0.3790 17 1 9.3365 6.9273 -2.1119 18 1 6.9409 6.7673 -2.4531 19 6 3.6221 -0.8774 0.0004 20 6 2.2656 -1.1029 0.0005 21 35 1.5260 -2.8433 0.0006 22 1 -0.3634 1.0277 -0.0005 23 1 -0.3634 -0.5142 -0.8898 24 1 -0.3633 -0.5134 0.8902 25 1 4.7489 2.9249 0.0006 26 1 8.4044 3.3346 1.4382 27 1 6.7433 3.5820 2.0270 28 1 7.3960 1.9333 1.8724 29 1 9.9963 4.9277 -0.3585 30 1 4.3558 -1.6699 0.0012 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335069688.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:10 Heat of formation + Delta-G solvation = -15.140984 kcal Electronic energy + Delta-G solvation = -16006.673180 eV Core-core repulsion = 13167.489950 eV Total energy + Delta-G solvation = -2839.183230 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.21719 -37.86983 -34.86885 -32.61226 -32.19389 -30.91878 -29.23962 -26.64711 -25.29572 -23.80184 -21.72010 -19.92115 -19.14712 -17.91412 -16.67533 -15.75283 -15.28214 -14.80323 -14.78820 -14.12573 -13.97289 -13.44198 -13.08456 -12.67556 -12.49430 -12.40280 -11.98794 -11.75555 -11.14582 -11.11664 -11.00635 -10.85795 -10.75006 -10.39004 -10.37263 -10.27351 -9.36781 -9.10416 -8.77000 -8.61524 -8.55760 -8.02171 -6.16164 -4.26027 0.42304 1.00197 1.50804 2.10782 2.11052 3.22464 3.29412 3.31525 3.70455 3.92052 4.33402 4.52329 4.83154 5.16321 5.23556 5.29183 5.37412 5.56139 5.67553 5.90595 6.07511 6.77767 6.90526 7.08596 7.32815 7.47400 7.63243 7.84917 8.08956 8.51435 8.69633 8.94425 9.41203 10.89903 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.034304 B = 0.003245 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.024103 B = 8625.858629 C = 9187.518856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.185 4.185 3 S 0.245 5.755 4 C -0.240 4.240 5 C 0.573 3.427 6 O -0.537 6.537 7 N -0.700 5.700 8 C 0.264 3.736 9 H 0.053 0.947 10 C -0.148 4.148 11 C -0.536 4.536 12 H 0.062 0.938 13 C 0.068 3.932 14 N -0.882 5.882 15 Si 0.903 3.097 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.273 1.273 19 C -0.050 4.050 20 C -0.120 4.120 21 Br -0.032 7.032 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.386 0.614 26 H 0.092 0.908 27 H 0.027 0.973 28 H 0.016 0.984 29 H 0.265 0.735 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.508 -10.203 1.307 22.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.307 4.307 3 S 0.512 5.488 4 C -0.362 4.362 5 C 0.357 3.643 6 O -0.417 6.417 7 N -0.347 5.347 8 C 0.163 3.837 9 H 0.070 0.930 10 C -0.207 4.207 11 C -0.575 4.575 12 H 0.080 0.920 13 C -0.136 4.136 14 N -0.519 5.519 15 Si 0.730 3.270 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.083 4.083 20 C -0.213 4.213 21 Br 0.051 6.949 22 H 0.092 0.908 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.218 0.782 26 H 0.111 0.889 27 H 0.047 0.953 28 H 0.035 0.965 29 H 0.075 0.925 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -19.146 -9.739 1.317 21.521 hybrid contribution 0.144 -0.008 -0.357 0.385 sum -19.002 -9.746 0.960 21.377 Atomic orbital electron populations 1.20465 0.86728 1.03434 1.03862 1.24191 1.02068 0.97263 1.07173 1.83177 0.93640 1.05613 1.66395 1.25013 0.98175 0.97405 1.15564 1.16917 0.85708 0.83575 0.78105 1.90801 1.41320 1.58221 1.51342 1.46492 1.11982 1.04535 1.71728 1.18845 0.76541 0.93985 0.94300 0.92969 1.22093 1.03920 0.97515 0.97139 1.21186 0.94615 0.99955 1.41723 0.92002 1.24878 0.95184 0.98438 0.95081 1.69893 0.98684 1.37674 1.45694 0.86428 0.77611 0.83689 0.79277 1.20485 1.21009 1.19793 1.20487 0.94011 0.96127 0.97649 1.20373 0.94498 0.91801 1.14629 1.96644 1.83978 1.16362 1.97883 0.90789 0.89812 0.89821 0.78165 0.88909 0.95339 0.96495 0.92473 0.82258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.68 9.60 36.00 0.35 -0.34 16 2 C -0.18 -2.07 6.28 -35.85 -0.23 -2.30 16 3 S 0.25 2.99 22.08 -107.50 -2.37 0.62 16 4 C -0.24 -3.92 6.45 -36.79 -0.24 -4.16 16 5 C 0.57 11.93 7.75 -12.90 -0.10 11.83 16 6 O -0.54 -13.14 16.50 5.19 0.09 -13.05 16 7 N -0.70 -14.85 5.06 -56.28 -0.29 -15.13 16 8 C 0.26 6.73 2.56 -69.08 -0.18 6.55 16 9 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 10 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16 11 C -0.54 -14.09 8.73 -34.44 -0.30 -14.39 16 12 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 13 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 14 N -0.88 -24.59 11.32 55.43 0.63 -23.96 16 15 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 19 C -0.05 -0.76 9.86 -40.42 -0.40 -1.15 16 20 C -0.12 -1.53 6.15 -41.38 -0.25 -1.78 16 21 Br -0.03 -0.35 33.19 -68.01 -2.26 -2.61 16 22 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 23 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.39 7.12 7.65 -40.82 -0.31 6.80 16 26 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.16 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 297.04 15.07 4.48 4.48 Total: -1.00 -29.71 297.04 -8.94 -38.66 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -3.10 Total: 3.02 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -1.10 Total: -7.36 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.34 Total: -39.09 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.09 Total: -13.05 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -2.37 Total: 0.62 kcal Atomic # 35 Polarization: -0.35 SS G_CDS: -2.26 Total: -2.61 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.71 -8.94 -38.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335069688.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.515 kcal (2) G-P(sol) polarization free energy of solvation -29.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds