Wall clock time and date at job start Tue Mar 31 2020 11:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 S 1.70622 * 124.52160 * 2 1 4 4 C 1.75829 * 91.57288 * 179.97438 * 3 2 1 5 5 C 1.46573 * 125.44920 * 179.97438 * 4 3 2 6 6 O 1.21700 * 120.00123 * 180.02562 * 5 4 3 7 7 N 1.34780 * 120.00100 * 0.02562 * 5 4 3 8 8 C 1.46501 * 119.99971 * 179.97438 * 7 5 4 9 9 H 1.09007 * 109.46981 * 35.00260 * 8 7 5 10 10 C 1.53001 * 109.47468 * 275.00640 * 8 7 5 11 11 C 1.50693 * 109.47055 * 155.00194 * 8 7 5 12 12 H 1.08004 * 120.00305 * 0.02562 * 11 8 7 13 13 C 1.37879 * 120.00001 * 180.02562 * 11 8 7 14 14 N 1.31509 * 120.00382 * 359.97438 * 13 11 8 15 15 Si 1.86804 * 119.99776 * 180.02562 * 13 11 8 16 16 H 1.48496 * 109.47192 * 90.00096 * 15 13 11 17 17 H 1.48504 * 109.46753 * 209.99426 * 15 13 11 18 18 H 1.48499 * 109.47323 * 329.99554 * 15 13 11 19 19 C 1.36660 * 109.09528 * 0.02562 * 4 3 2 20 20 C 1.33867 * 124.52459 * 179.97438 * 2 1 3 21 21 Br 1.89102 * 122.45209 * 0.02562 * 20 2 1 22 22 H 1.09003 * 109.47263 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47524 * 120.02270 * 1 2 3 24 24 H 1.09001 * 109.47003 * 240.02753 * 1 2 3 25 25 H 0.96995 * 120.00342 * 0.02562 * 7 5 4 26 26 H 1.08996 * 109.47093 * 180.02562 * 10 8 7 27 27 H 1.08999 * 109.47006 * 299.99751 * 10 8 7 28 28 H 1.08997 * 109.47112 * 59.99733 * 10 8 7 29 29 H 0.96998 * 120.00545 * 180.02562 * 14 13 11 30 30 H 1.08001 * 123.35402 * 180.02562 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.4739 1.4058 0.0000 4 6 3.9494 0.4495 0.0008 5 6 5.3121 0.9891 0.0006 6 8 6.2659 0.2332 0.0007 7 7 5.5090 2.3224 0.0003 8 6 6.8711 2.8618 0.0007 9 1 7.5191 2.2126 -0.5884 10 6 7.3912 2.9329 1.4379 11 6 6.8643 4.2437 -0.6001 12 1 5.9380 4.6772 -0.9471 13 6 8.0408 4.9548 -0.7067 14 7 9.1687 4.4273 -0.2838 15 14 8.0322 6.6683 -1.4508 16 1 7.8126 7.6723 -0.3790 17 1 9.3365 6.9273 -2.1119 18 1 6.9409 6.7673 -2.4531 19 6 3.6221 -0.8774 0.0004 20 6 2.2656 -1.1029 0.0005 21 35 1.5260 -2.8433 0.0006 22 1 -0.3634 1.0277 -0.0005 23 1 -0.3634 -0.5142 -0.8898 24 1 -0.3633 -0.5134 0.8902 25 1 4.7489 2.9249 0.0006 26 1 8.4044 3.3346 1.4382 27 1 6.7433 3.5820 2.0270 28 1 7.3960 1.9333 1.8724 29 1 9.9963 4.9277 -0.3585 30 1 4.3558 -1.6699 0.0012 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335069688.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:07 Heat of formation + Delta-G solvation = -33.565993 kcal Electronic energy + Delta-G solvation = -16007.472148 eV Core-core repulsion = 13167.489950 eV Total energy + Delta-G solvation = -2839.982199 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -40.78805 -39.06235 -36.77030 -34.43854 -33.33944 -31.81019 -31.07801 -27.82971 -27.34296 -24.90844 -23.29835 -21.67913 -20.51528 -19.24544 -18.23376 -17.37111 -16.93188 -16.40002 -16.14673 -15.53700 -15.18761 -14.79442 -14.47575 -14.20951 -13.79896 -13.59530 -13.25443 -13.02966 -12.89349 -12.85745 -12.71488 -12.31689 -12.14590 -12.10443 -11.78883 -11.29757 -11.14834 -11.08057 -10.62463 -10.02061 -9.74588 -9.51161 -8.18888 -6.37190 -0.68787 0.04058 0.40362 0.98374 1.12182 1.46133 1.47016 1.57682 2.13607 2.27864 2.50506 3.11914 3.62478 3.85704 3.98929 4.45192 4.59320 4.67593 4.68546 4.81127 4.88600 4.96407 5.04416 5.13928 5.36818 5.51732 5.62606 5.83533 6.04896 6.67133 6.77446 7.22492 7.38842 8.87747 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.034304 B = 0.003245 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.024103 B = 8625.858629 C = 9187.518856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.159 4.159 3 S 0.301 5.699 4 C -0.290 4.290 5 C 0.574 3.426 6 O -0.587 6.587 7 N -0.697 5.697 8 C 0.270 3.730 9 H 0.003 0.997 10 C -0.135 4.135 11 C -0.550 4.550 12 H 0.075 0.925 13 C 0.017 3.983 14 N -0.917 5.917 15 Si 0.974 3.026 16 H -0.269 1.269 17 H -0.287 1.287 18 H -0.263 1.263 19 C -0.040 4.040 20 C -0.144 4.144 21 Br -0.013 7.013 22 H 0.095 0.905 23 H 0.097 0.903 24 H 0.098 0.902 25 H 0.401 0.599 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.012 0.988 29 H 0.267 0.733 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.798 -9.164 1.078 24.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.282 4.282 3 S 0.568 5.432 4 C -0.411 4.411 5 C 0.360 3.640 6 O -0.471 6.471 7 N -0.345 5.345 8 C 0.167 3.833 9 H 0.021 0.979 10 C -0.194 4.194 11 C -0.588 4.588 12 H 0.093 0.907 13 C -0.184 4.184 14 N -0.554 5.554 15 Si 0.799 3.201 16 H -0.195 1.195 17 H -0.212 1.212 18 H -0.187 1.187 19 C -0.073 4.073 20 C -0.236 4.236 21 Br 0.070 6.930 22 H 0.114 0.886 23 H 0.116 0.884 24 H 0.116 0.884 25 H 0.236 0.764 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.031 0.969 29 H 0.076 0.924 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -22.484 -8.691 1.092 24.130 hybrid contribution 1.041 -0.438 -0.281 1.164 sum -21.443 -9.129 0.811 23.320 Atomic orbital electron populations 1.20716 0.83778 1.05368 1.05117 1.24752 1.03859 0.96368 1.03210 1.82911 0.90595 1.04620 1.65095 1.24479 0.97690 0.98812 1.20144 1.17422 0.87266 0.82839 0.76424 1.90757 1.43731 1.59148 1.53417 1.46189 1.10900 1.05251 1.72207 1.18467 0.77981 0.93155 0.93692 0.97889 1.21917 1.02937 0.97337 0.97182 1.21505 0.95333 1.00111 1.41867 0.90697 1.25804 0.94688 1.02550 0.95336 1.70045 0.99361 1.39350 1.46692 0.85308 0.77589 0.78581 0.78654 1.19476 1.21234 1.18690 1.20548 0.95183 0.95443 0.96175 1.20362 0.93597 0.93445 1.16204 1.96655 1.83305 1.15074 1.97929 0.88623 0.88426 0.88374 0.76408 0.91071 0.93837 0.96901 0.92419 0.83529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.04 9.60 71.23 0.68 -0.36 16 2 C -0.16 -3.07 6.28 24.69 0.16 -2.92 16 3 S 0.30 6.62 22.08 -56.49 -1.25 5.37 16 4 C -0.29 -9.47 6.45 24.08 0.16 -9.32 16 5 C 0.57 24.73 7.75 86.42 0.67 25.40 16 6 O -0.59 -30.51 16.50 -4.35 -0.07 -30.58 16 7 N -0.70 -30.18 5.06 -450.17 -2.28 -32.46 16 8 C 0.27 14.22 2.56 44.24 0.11 14.33 16 9 H 0.00 0.20 7.58 -2.38 -0.02 0.18 16 10 C -0.13 -6.91 9.26 71.98 0.67 -6.25 16 11 C -0.55 -29.05 8.73 25.60 0.22 -28.83 16 12 H 0.07 3.67 7.74 -2.91 -0.02 3.64 16 13 C 0.02 0.88 5.30 84.66 0.45 1.33 16 14 N -0.92 -52.30 11.32 21.45 0.24 -52.05 16 15 Si 0.97 41.40 29.54 68.60 2.03 43.43 16 16 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 17 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 19 C -0.04 -1.18 9.86 21.73 0.21 -0.97 16 20 C -0.14 -3.41 6.15 21.10 0.13 -3.28 16 21 Br -0.01 -0.26 33.19 -20.37 -0.68 -0.93 16 22 H 0.09 0.73 8.11 -2.39 -0.02 0.72 16 23 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.40 14.61 7.65 -92.71 -0.71 13.90 16 26 H 0.07 3.96 6.07 -2.39 -0.01 3.94 16 27 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 30 H 0.15 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -66.64 297.04 1.92 -64.72 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.47 Total: 13.36 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 3.46 Total: -10.84 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -2.04 Total: -84.52 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.07 Total: -30.58 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: 6.62 SS G_CDS: -1.25 Total: 5.37 kcal Atomic # 35 Polarization: -0.26 SS G_CDS: -0.68 Total: -0.93 kcal Total: -66.64 1.92 -64.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335069688.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.155 kcal (2) G-P(sol) polarization free energy of solvation -66.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds