Wall clock time and date at job start Tue Mar 31 2020 11:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47325 * 2 1 4 4 C 1.50698 * 109.47129 * 239.99900 * 2 1 3 5 5 H 1.07994 * 120.00360 * 239.99939 * 4 2 1 6 6 C 1.37883 * 119.99875 * 60.00003 * 4 2 1 7 7 N 1.31513 * 119.99843 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99828 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.46828 * 90.00074 * 8 6 4 10 10 H 1.48503 * 109.46647 * 209.99833 * 8 6 4 11 11 H 1.48496 * 109.46895 * 329.99737 * 8 6 4 12 12 N 1.46501 * 109.47277 * 119.99631 * 2 1 3 13 13 C 1.46505 * 119.99600 * 60.00646 * 12 2 1 14 14 C 1.34775 * 120.00357 * 239.99843 * 12 2 1 15 15 O 1.21648 * 119.99502 * 5.23723 * 14 12 2 16 16 C 1.47075 * 119.99948 * 185.23340 * 14 12 2 17 17 C 1.44482 * 123.48729 * 353.05162 * 16 14 12 18 18 C 1.32713 * 113.09800 * 180.02562 * 17 16 14 19 19 S 1.75499 * 110.61694 * 359.97438 * 18 17 16 20 20 C 1.36175 * 123.48477 * 172.75473 * 16 14 12 21 21 Br 1.89109 * 124.59936 * 0.02562 * 20 16 14 22 22 H 1.09001 * 109.47325 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.47098 * 299.99788 * 1 2 3 24 24 H 1.08995 * 109.47669 * 60.00257 * 1 2 3 25 25 H 0.97002 * 119.99580 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.46653 * 245.78797 * 13 12 2 27 27 H 1.08995 * 109.47053 * 125.78946 * 13 12 2 28 28 H 1.08998 * 109.47001 * 5.78539 * 13 12 2 29 29 H 1.08005 * 123.45164 * 359.97438 * 17 16 14 30 30 H 1.08007 * 124.69430 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9426 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.3448 -2.1615 -4.4123 10 1 2.4871 -0.1402 -5.1120 11 1 3.6308 -1.7565 -3.7119 12 7 2.0183 -0.6905 1.1962 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0355 2.0833 15 8 3.0088 1.1532 1.9413 16 6 3.3780 -0.7580 3.2231 17 6 3.0577 -2.1292 3.5470 18 6 3.7029 -2.5757 4.6173 19 16 4.7404 -1.3249 5.2799 20 6 4.2819 -0.2057 4.0789 21 35 4.9354 1.5645 3.9549 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5137 -0.8899 25 1 0.7086 1.1612 -3.4844 26 1 1.0324 -2.1669 2.3130 27 1 2.5725 -2.6765 1.5804 28 1 1.1252 -2.4795 0.5631 29 1 2.3635 -2.7290 2.9770 30 1 3.6033 -3.5712 5.0244 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336220365.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:08 Heat of formation + Delta-G solvation = 33.457943 kcal Electronic energy + Delta-G solvation = -16778.648400 eV Core-core repulsion = 13941.572577 eV Total energy + Delta-G solvation = -2837.075823 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.59211 -36.68611 -35.45005 -32.87701 -31.70325 -29.66261 -28.62435 -26.46363 -25.22876 -24.49961 -21.46641 -20.01105 -18.63405 -17.53486 -16.46205 -15.70518 -15.45459 -14.80892 -14.67631 -13.83881 -13.23194 -13.19285 -13.11035 -12.62833 -12.44585 -12.28322 -11.62763 -11.47156 -11.08170 -10.86699 -10.77957 -10.71700 -10.38510 -10.32071 -10.19814 -10.08388 -9.19699 -8.77961 -8.73681 -8.45520 -8.42401 -7.58896 -6.07900 -4.16122 0.65233 1.09219 1.73056 1.96494 2.13316 3.25830 3.33336 3.36161 3.85846 4.00046 4.39667 4.78603 5.15177 5.23332 5.31484 5.65306 5.68492 5.85307 5.89985 6.17106 6.26840 6.76027 6.83679 7.05889 7.42029 7.51837 7.70736 8.01344 8.18411 8.49199 8.81712 9.02201 9.50424 10.97337 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.020718 B = 0.004826 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.134282 B = 5800.580343 C = 6425.698299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.259 3.741 3 H 0.065 0.935 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.581 5.581 13 C 0.070 3.930 14 C 0.554 3.446 15 O -0.524 6.524 16 C -0.109 4.109 17 C -0.139 4.139 18 C -0.226 4.226 19 S 0.196 5.804 20 C -0.186 4.186 21 Br 0.036 6.964 22 H 0.029 0.971 23 H 0.012 0.988 24 H 0.094 0.906 25 H 0.263 0.737 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.191 0.809 30 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.676 -6.326 16.232 18.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.083 0.917 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.312 5.312 13 C -0.073 4.073 14 C 0.339 3.661 15 O -0.403 6.403 16 C -0.129 4.129 17 C -0.168 4.168 18 C -0.362 4.362 19 S 0.460 5.540 20 C -0.385 4.385 21 Br 0.120 6.880 22 H 0.048 0.952 23 H 0.031 0.969 24 H 0.112 0.888 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.207 0.793 30 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 6.913 -4.841 17.166 19.129 hybrid contribution -0.816 -1.060 -2.077 2.470 sum 6.097 -5.901 15.090 17.312 Atomic orbital electron populations 1.22098 0.98073 0.99387 1.00920 1.18997 0.90959 0.94607 0.79513 0.91679 1.21326 1.31910 1.13082 0.90238 0.92234 1.24890 0.94933 0.94958 0.98945 1.69882 1.36278 1.22521 1.23782 0.86494 0.79194 0.79302 0.82410 1.20602 1.21086 1.19935 1.48079 1.48455 1.11351 1.23320 1.22235 0.99582 0.83895 1.01601 1.17456 0.80033 0.86766 0.81852 1.90833 1.60444 1.14168 1.74825 1.20633 0.99251 0.94548 0.98463 1.22826 1.02195 0.94177 0.97632 1.25687 1.04303 1.03932 1.02244 1.82901 1.43614 1.00562 1.26920 1.26020 1.07264 1.00089 1.05167 1.96744 1.84314 1.09007 1.97895 0.95169 0.96891 0.88779 0.92658 0.93133 0.91919 0.89583 0.79269 0.81079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.96 37.15 0.33 -3.15 16 2 C 0.26 6.60 2.58 -69.09 -0.18 6.42 16 3 H 0.07 1.93 6.91 -51.93 -0.36 1.57 16 4 C -0.53 -14.12 8.05 -34.44 -0.28 -14.40 16 5 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.99 11.32 55.43 0.63 -24.36 16 8 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.58 -12.50 2.75 -176.69 -0.49 -12.98 16 13 C 0.07 1.14 7.49 59.85 0.45 1.59 16 14 C 0.55 12.02 7.63 -12.68 -0.10 11.92 16 15 O -0.52 -13.03 13.92 5.24 0.07 -12.95 16 16 C -0.11 -1.88 5.94 -104.60 -0.62 -2.50 16 17 C -0.14 -1.83 8.30 -39.01 -0.32 -2.16 16 18 C -0.23 -2.39 11.11 28.85 0.32 -2.07 16 19 S 0.20 2.25 23.01 -107.50 -2.47 -0.22 16 20 C -0.19 -2.97 6.75 29.99 0.20 -2.77 16 21 Br 0.04 0.59 31.68 -68.01 -2.15 -1.56 16 22 H 0.03 0.65 7.19 -51.93 -0.37 0.28 16 23 H 0.01 0.28 8.14 -51.92 -0.42 -0.15 16 24 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 25 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.05 0.68 6.90 -51.93 -0.36 0.32 16 27 H 0.06 0.89 5.74 -51.93 -0.30 0.59 16 28 H 0.09 1.46 6.81 -51.93 -0.35 1.10 16 29 H 0.19 2.16 3.52 -52.52 -0.18 1.98 16 30 H 0.17 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 280.96 15.07 4.23 4.23 Total: -1.00 -30.94 280.96 -8.11 -39.05 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: -2.62 Total: -1.69 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -0.29 Total: -5.43 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.14 Total: -37.34 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.07 Total: -12.95 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -2.47 Total: -0.22 kcal Atomic # 35 Polarization: 0.59 SS G_CDS: -2.15 Total: -1.56 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.94 -8.11 -39.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336220365.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.512 kcal (2) G-P(sol) polarization free energy of solvation -30.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds