Wall clock time and date at job start Tue Mar 31 2020 11:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47325 * 2 1 4 4 C 1.50698 * 109.47129 * 239.99900 * 2 1 3 5 5 H 1.07994 * 120.00360 * 239.99939 * 4 2 1 6 6 C 1.37883 * 119.99875 * 60.00003 * 4 2 1 7 7 N 1.31513 * 119.99843 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99828 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.46828 * 90.00074 * 8 6 4 10 10 H 1.48503 * 109.46647 * 209.99833 * 8 6 4 11 11 H 1.48496 * 109.46895 * 329.99737 * 8 6 4 12 12 N 1.46501 * 109.47277 * 119.99631 * 2 1 3 13 13 C 1.46505 * 119.99600 * 60.00646 * 12 2 1 14 14 C 1.34775 * 120.00357 * 239.99843 * 12 2 1 15 15 O 1.21648 * 119.99502 * 5.23723 * 14 12 2 16 16 C 1.47075 * 119.99948 * 185.23340 * 14 12 2 17 17 C 1.44482 * 123.48729 * 353.05162 * 16 14 12 18 18 C 1.32713 * 113.09800 * 180.02562 * 17 16 14 19 19 S 1.75499 * 110.61694 * 359.97438 * 18 17 16 20 20 C 1.36175 * 123.48477 * 172.75473 * 16 14 12 21 21 Br 1.89109 * 124.59936 * 0.02562 * 20 16 14 22 22 H 1.09001 * 109.47325 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.47098 * 299.99788 * 1 2 3 24 24 H 1.08995 * 109.47669 * 60.00257 * 1 2 3 25 25 H 0.97002 * 119.99580 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.46653 * 245.78797 * 13 12 2 27 27 H 1.08995 * 109.47053 * 125.78946 * 13 12 2 28 28 H 1.08998 * 109.47001 * 5.78539 * 13 12 2 29 29 H 1.08005 * 123.45164 * 359.97438 * 17 16 14 30 30 H 1.08007 * 124.69430 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9426 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.3448 -2.1615 -4.4123 10 1 2.4871 -0.1402 -5.1120 11 1 3.6308 -1.7565 -3.7119 12 7 2.0183 -0.6905 1.1962 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0355 2.0833 15 8 3.0088 1.1532 1.9413 16 6 3.3780 -0.7580 3.2231 17 6 3.0577 -2.1292 3.5470 18 6 3.7029 -2.5757 4.6173 19 16 4.7404 -1.3249 5.2799 20 6 4.2819 -0.2057 4.0789 21 35 4.9354 1.5645 3.9549 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5137 -0.8899 25 1 0.7086 1.1612 -3.4844 26 1 1.0324 -2.1669 2.3130 27 1 2.5725 -2.6765 1.5804 28 1 1.1252 -2.4795 0.5631 29 1 2.3635 -2.7290 2.9770 30 1 3.6033 -3.5712 5.0244 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336220365.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:08 Heat of formation + Delta-G solvation = 14.017708 kcal Electronic energy + Delta-G solvation = -16779.491392 eV Core-core repulsion = 13941.572577 eV Total energy + Delta-G solvation = -2837.918815 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = -0.90 seconds Orbital eigenvalues (eV) -41.08542 -37.95604 -37.19300 -34.78143 -32.87690 -31.51237 -29.79486 -27.87509 -27.28588 -25.86597 -22.95211 -21.42677 -20.08549 -18.65435 -18.41444 -17.33733 -16.87988 -16.48304 -16.24805 -15.33187 -14.63954 -14.54744 -14.32264 -14.05674 -13.81670 -13.71542 -13.52955 -13.01284 -12.76029 -12.74116 -12.50319 -12.19804 -12.14270 -11.91774 -11.49531 -11.45187 -11.18128 -10.55697 -10.28424 -9.85892 -9.46600 -9.25114 -8.13835 -6.30564 -0.48916 0.04285 0.63853 0.98087 1.05151 1.41796 1.43848 1.53526 2.27674 2.42724 2.52469 3.14159 3.69964 4.03793 4.22945 4.40669 4.64518 4.70307 4.76567 4.90203 4.95037 5.05885 5.08849 5.19115 5.47598 5.62889 5.67738 6.04987 6.16609 6.77036 6.80181 7.30338 7.46625 8.90546 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.020718 B = 0.004826 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.134282 B = 5800.580343 C = 6425.698299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.264 3.736 3 H 0.009 0.991 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.965 3.035 9 H -0.265 1.265 10 H -0.287 1.287 11 H -0.271 1.271 12 N -0.590 5.590 13 C 0.065 3.935 14 C 0.541 3.459 15 O -0.574 6.574 16 C -0.135 4.135 17 C -0.154 4.154 18 C -0.199 4.199 19 S 0.269 5.731 20 C -0.216 4.216 21 Br 0.012 6.988 22 H 0.050 0.950 23 H 0.017 0.983 24 H 0.067 0.933 25 H 0.264 0.736 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.207 0.793 30 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.185 -9.852 17.767 21.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.162 3.838 3 H 0.027 0.973 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.790 3.210 9 H -0.190 1.190 10 H -0.213 1.213 11 H -0.196 1.196 12 N -0.320 5.320 13 C -0.077 4.077 14 C 0.329 3.671 15 O -0.456 6.456 16 C -0.157 4.157 17 C -0.182 4.182 18 C -0.335 4.335 19 S 0.534 5.466 20 C -0.416 4.416 21 Br 0.097 6.903 22 H 0.069 0.931 23 H 0.036 0.964 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.223 0.777 30 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 7.419 -8.419 18.735 21.838 hybrid contribution -0.922 0.010 -2.413 2.583 sum 6.497 -8.409 16.321 19.476 Atomic orbital electron populations 1.21879 0.97012 1.00261 0.99829 1.18566 0.91691 0.92229 0.81294 0.97342 1.21572 1.31905 1.13107 0.90987 0.91984 1.25740 0.95070 0.95614 1.02017 1.70033 1.37326 1.23878 1.24411 0.85449 0.78862 0.78263 0.78397 1.19017 1.21323 1.19619 1.48048 1.48507 1.13314 1.22095 1.22584 1.01404 0.80993 1.02706 1.18189 0.79517 0.86603 0.82833 1.90789 1.62082 1.16454 1.76299 1.20472 1.00827 0.96618 0.97767 1.22792 1.03839 0.92280 0.99259 1.26252 1.01617 1.05300 1.00357 1.82701 1.41799 0.98464 1.23625 1.26385 1.07841 1.00272 1.07096 1.96703 1.84357 1.11179 1.98092 0.93109 0.96395 0.91382 0.92661 0.89780 0.89267 0.90384 0.77665 0.76369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.40 8.96 71.98 0.65 -5.76 16 2 C 0.26 13.95 2.58 44.24 0.11 14.07 16 3 H 0.01 0.55 6.91 -2.39 -0.02 0.53 16 4 C -0.54 -29.27 8.05 25.60 0.21 -29.06 16 5 H 0.06 3.27 7.65 -2.91 -0.02 3.24 16 6 C 0.02 0.83 5.30 84.66 0.45 1.28 16 7 N -0.92 -53.28 11.32 21.45 0.24 -53.03 16 8 Si 0.97 43.07 29.54 68.60 2.03 45.09 16 9 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 N -0.59 -25.60 2.75 -831.17 -2.29 -27.88 16 13 C 0.06 1.97 7.49 127.77 0.96 2.93 16 14 C 0.54 24.06 7.63 86.56 0.66 24.72 16 15 O -0.57 -30.24 13.92 -4.18 -0.06 -30.30 16 16 C -0.14 -4.54 5.94 -19.85 -0.12 -4.66 16 17 C -0.15 -3.49 8.30 22.69 0.19 -3.30 16 18 C -0.20 -3.14 11.11 66.65 0.74 -2.40 16 19 S 0.27 5.16 23.01 -56.49 -1.30 3.86 16 20 C -0.22 -6.66 6.75 67.34 0.45 -6.21 16 21 Br 0.01 0.41 31.68 -20.37 -0.65 -0.23 16 22 H 0.05 2.20 7.19 -2.39 -0.02 2.19 16 23 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 24 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 25 H 0.26 14.54 8.31 -92.71 -0.77 13.76 16 26 H 0.08 2.00 6.90 -2.39 -0.02 1.98 16 27 H 0.09 2.25 5.74 -2.39 -0.01 2.24 16 28 H 0.08 2.50 6.81 -2.39 -0.02 2.48 16 29 H 0.21 3.78 3.52 -2.94 -0.01 3.77 16 30 H 0.22 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -72.04 280.96 3.46 -68.58 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: 1.18 Total: 2.29 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 4.30 Total: -8.38 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -2.05 Total: -80.92 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.06 Total: -30.30 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: 5.16 SS G_CDS: -1.30 Total: 3.86 kcal Atomic # 35 Polarization: 0.41 SS G_CDS: -0.65 Total: -0.23 kcal Total: -72.04 3.46 -68.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336220365.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.598 kcal (2) G-P(sol) polarization free energy of solvation -72.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.89 seconds