Wall clock time and date at job start Tue Mar 31 2020 11:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47012 * 2 1 4 4 C 1.50695 * 109.47547 * 120.00538 * 2 1 3 5 5 H 1.07996 * 120.00571 * 120.00139 * 4 2 1 6 6 C 1.37883 * 119.99748 * 299.99706 * 4 2 1 7 7 N 1.31514 * 120.00194 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99983 * 0.02562 * 6 4 2 9 9 H 1.48510 * 109.46900 * 89.99694 * 8 6 4 10 10 H 1.48502 * 109.47333 * 209.99781 * 8 6 4 11 11 H 1.48499 * 109.47092 * 330.00214 * 8 6 4 12 12 N 1.46507 * 109.47072 * 240.00389 * 2 1 3 13 13 C 1.46497 * 119.99990 * 299.99886 * 12 2 1 14 14 C 1.34775 * 120.00051 * 119.71875 * 12 2 1 15 15 O 1.21652 * 119.99645 * 7.07104 * 14 12 2 16 16 C 1.47080 * 120.00216 * 187.06176 * 14 12 2 17 17 C 1.44484 * 123.48183 * 9.72244 * 16 14 12 18 18 C 1.32712 * 113.09551 * 179.97438 * 17 16 14 19 19 S 1.75491 * 110.61778 * 359.97438 * 18 17 16 20 20 C 1.36166 * 123.48762 * 189.41733 * 16 14 12 21 21 Br 1.89100 * 124.60308 * 0.04295 * 20 16 14 22 22 H 1.09000 * 109.47245 * 299.99296 * 1 2 3 23 23 H 1.08996 * 109.47501 * 59.99563 * 1 2 3 24 24 H 1.09002 * 109.47012 * 179.97438 * 1 2 3 25 25 H 0.96996 * 120.00381 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.47280 * 95.85180 * 13 12 2 27 27 H 1.08998 * 109.47116 * 215.85592 * 13 12 2 28 28 H 1.09005 * 109.46817 * 335.85209 * 13 12 2 29 29 H 1.07999 * 123.45375 * 359.95407 * 17 16 14 30 30 H 1.08010 * 124.69107 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1382 -0.8591 3.5565 8 14 0.6248 1.2789 2.6542 9 1 -0.8028 0.8724 2.6999 10 1 0.9760 1.9950 3.9069 11 1 0.8469 2.1763 1.4921 12 7 2.0183 -0.6906 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 6 2.7884 -0.0339 -2.0863 15 8 3.1847 1.0887 -1.8360 16 6 3.1500 -0.6746 -3.3599 17 6 2.5640 -1.9107 -3.8249 18 6 3.0397 -2.3025 -5.0002 19 16 4.2360 -1.1638 -5.5934 20 6 4.0671 -0.1611 -4.2255 21 35 5.0262 1.4446 -3.9461 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.9036 -0.5280 4.4375 26 1 0.7968 -2.1450 -2.0861 27 1 2.5048 -2.6077 -1.8939 28 1 1.4282 -2.5702 -0.4770 29 1 1.8157 -2.4597 -3.2725 30 1 2.7330 -3.1984 -5.5198 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336220366.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:11 Heat of formation + Delta-G solvation = 37.490826 kcal Electronic energy + Delta-G solvation = -16827.588859 eV Core-core repulsion = 13990.687915 eV Total energy + Delta-G solvation = -2836.900944 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.73148 -36.82291 -35.62795 -32.78936 -31.79093 -30.52671 -28.71493 -26.55501 -25.21745 -24.65144 -21.60547 -20.10807 -18.64631 -17.63712 -16.75018 -15.90412 -15.68671 -15.10339 -14.53512 -13.94999 -13.38824 -13.19370 -13.15715 -12.86135 -12.61889 -12.34787 -12.24396 -11.89907 -11.47007 -11.16734 -10.87435 -10.76794 -10.57823 -10.31982 -10.11157 -9.62993 -9.35142 -8.90573 -8.79978 -8.63974 -8.51861 -7.74421 -6.15098 -4.15766 0.57476 1.02011 1.65563 1.89053 2.03855 3.22930 3.37101 3.39589 3.71282 3.82931 4.34851 4.71059 5.06434 5.16655 5.21770 5.58766 5.62834 5.78026 5.83501 6.08701 6.22786 6.24506 6.31309 6.46517 6.80534 7.10484 7.32588 7.61508 8.13835 8.44319 8.81557 8.88049 9.45651 10.97586 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.021837 B = 0.005082 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.909914 B = 5508.123610 C = 6322.931070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.231 3.769 3 H 0.064 0.936 4 C -0.527 4.527 5 H 0.079 0.921 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.577 5.577 13 C 0.069 3.931 14 C 0.557 3.443 15 O -0.523 6.523 16 C -0.111 4.111 17 C -0.130 4.130 18 C -0.225 4.225 19 S 0.203 5.797 20 C -0.185 4.185 21 Br 0.037 6.963 22 H 0.051 0.949 23 H 0.033 0.967 24 H 0.056 0.944 25 H 0.266 0.734 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.183 0.817 30 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.111 -2.488 -19.971 20.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.129 3.871 3 H 0.082 0.918 4 C -0.565 4.565 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.532 5.532 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.307 5.307 13 C -0.074 4.074 14 C 0.342 3.658 15 O -0.401 6.401 16 C -0.131 4.131 17 C -0.159 4.159 18 C -0.362 4.362 19 S 0.467 5.533 20 C -0.385 4.385 21 Br 0.121 6.879 22 H 0.069 0.931 23 H 0.052 0.948 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.200 0.800 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.566 -1.231 -20.807 21.146 hybrid contribution -1.728 0.164 1.538 2.319 sum 1.838 -1.067 -19.269 19.386 Atomic orbital electron populations 1.22464 0.98972 1.01149 0.99302 1.19320 0.89885 0.95262 0.82619 0.91812 1.21145 1.32688 1.14281 0.88426 0.90270 1.24858 0.95664 0.96543 0.95611 1.69870 1.45141 1.40211 0.97975 0.86926 0.80378 0.83893 0.77550 1.20406 1.22121 1.18771 1.47674 1.49109 1.11432 1.22516 1.22267 0.98847 0.83320 1.02975 1.17465 0.79780 0.85883 0.82671 1.90836 1.52937 1.18947 1.77364 1.20542 0.98668 0.96488 0.97419 1.22446 1.02208 0.95281 0.95937 1.25672 1.04036 1.05368 1.01083 1.82943 1.39447 1.13054 1.17874 1.26046 1.06140 1.02545 1.03722 1.96756 1.69915 1.24529 1.96661 0.93077 0.94811 0.92532 0.92422 0.93253 0.91305 0.89286 0.80040 0.80958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 8.67 37.15 0.32 -3.10 16 2 C 0.23 5.55 2.21 -69.08 -0.15 5.39 16 3 H 0.06 1.71 5.98 -51.93 -0.31 1.40 16 4 C -0.53 -14.50 8.53 -34.44 -0.29 -14.80 16 5 H 0.08 2.34 7.68 -52.49 -0.40 1.94 16 6 C 0.08 2.16 5.45 -17.82 -0.10 2.07 16 7 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 8 Si 0.88 21.81 24.37 -169.99 -4.14 17.67 16 9 H -0.28 -6.52 6.87 56.52 0.39 -6.13 16 10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 12 N -0.58 -11.91 2.75 -176.66 -0.49 -12.39 16 13 C 0.07 1.09 7.50 59.85 0.45 1.54 16 14 C 0.56 11.57 7.61 -12.68 -0.10 11.48 16 15 O -0.52 -12.48 13.96 5.23 0.07 -12.40 16 16 C -0.11 -1.83 5.80 -104.60 -0.61 -2.44 16 17 C -0.13 -1.61 8.24 -39.01 -0.32 -1.93 16 18 C -0.23 -2.23 11.11 28.85 0.32 -1.91 16 19 S 0.20 2.20 23.01 -107.50 -2.47 -0.28 16 20 C -0.19 -2.82 6.75 29.99 0.20 -2.62 16 21 Br 0.04 0.59 31.71 -68.01 -2.16 -1.57 16 22 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 23 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 1.10 7.67 -51.93 -0.40 0.70 16 25 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.05 0.63 6.97 -51.93 -0.36 0.27 16 27 H 0.07 0.95 5.52 -51.93 -0.29 0.66 16 28 H 0.09 1.54 7.11 -51.93 -0.37 1.17 16 29 H 0.18 1.94 3.92 -52.49 -0.21 1.74 16 30 H 0.17 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 274.77 15.07 4.14 4.14 Total: -1.00 -32.34 274.77 -7.08 -39.42 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: -2.53 Total: -2.18 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -0.27 Total: -6.31 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.29 Total: -38.48 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.07 Total: -12.40 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.14 Total: 17.67 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.47 Total: -0.28 kcal Atomic # 35 Polarization: 0.59 SS G_CDS: -2.16 Total: -1.57 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -32.34 -7.08 -39.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336220366.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.912 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds