Wall clock time and date at job start Tue Mar 31 2020 11:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47012 * 2 1 4 4 C 1.50695 * 109.47547 * 120.00538 * 2 1 3 5 5 H 1.07996 * 120.00571 * 120.00139 * 4 2 1 6 6 C 1.37883 * 119.99748 * 299.99706 * 4 2 1 7 7 N 1.31514 * 120.00194 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99983 * 0.02562 * 6 4 2 9 9 H 1.48510 * 109.46900 * 89.99694 * 8 6 4 10 10 H 1.48502 * 109.47333 * 209.99781 * 8 6 4 11 11 H 1.48499 * 109.47092 * 330.00214 * 8 6 4 12 12 N 1.46507 * 109.47072 * 240.00389 * 2 1 3 13 13 C 1.46497 * 119.99990 * 299.99886 * 12 2 1 14 14 C 1.34775 * 120.00051 * 119.71875 * 12 2 1 15 15 O 1.21652 * 119.99645 * 7.07104 * 14 12 2 16 16 C 1.47080 * 120.00216 * 187.06176 * 14 12 2 17 17 C 1.44484 * 123.48183 * 9.72244 * 16 14 12 18 18 C 1.32712 * 113.09551 * 179.97438 * 17 16 14 19 19 S 1.75491 * 110.61778 * 359.97438 * 18 17 16 20 20 C 1.36166 * 123.48762 * 189.41733 * 16 14 12 21 21 Br 1.89100 * 124.60308 * 0.04295 * 20 16 14 22 22 H 1.09000 * 109.47245 * 299.99296 * 1 2 3 23 23 H 1.08996 * 109.47501 * 59.99563 * 1 2 3 24 24 H 1.09002 * 109.47012 * 179.97438 * 1 2 3 25 25 H 0.96996 * 120.00381 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.47280 * 95.85180 * 13 12 2 27 27 H 1.08998 * 109.47116 * 215.85592 * 13 12 2 28 28 H 1.09005 * 109.46817 * 335.85209 * 13 12 2 29 29 H 1.07999 * 123.45375 * 359.95407 * 17 16 14 30 30 H 1.08010 * 124.69107 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1382 -0.8591 3.5565 8 14 0.6248 1.2789 2.6542 9 1 -0.8028 0.8724 2.6999 10 1 0.9760 1.9950 3.9069 11 1 0.8469 2.1763 1.4921 12 7 2.0183 -0.6906 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 6 2.7884 -0.0339 -2.0863 15 8 3.1847 1.0887 -1.8360 16 6 3.1500 -0.6746 -3.3599 17 6 2.5640 -1.9107 -3.8249 18 6 3.0397 -2.3025 -5.0002 19 16 4.2360 -1.1638 -5.5934 20 6 4.0671 -0.1611 -4.2255 21 35 5.0262 1.4446 -3.9461 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.9036 -0.5280 4.4375 26 1 0.7968 -2.1450 -2.0861 27 1 2.5048 -2.6077 -1.8939 28 1 1.4282 -2.5702 -0.4770 29 1 1.8157 -2.4597 -3.2725 30 1 2.7330 -3.1984 -5.5198 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336220366.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:10 Heat of formation + Delta-G solvation = 15.279947 kcal Electronic energy + Delta-G solvation = -16828.551995 eV Core-core repulsion = 13990.687915 eV Total energy + Delta-G solvation = -2837.864080 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.17013 -38.02995 -37.29796 -34.75612 -32.93499 -32.31817 -29.80939 -27.91236 -27.17471 -26.01602 -23.00663 -21.46969 -20.06027 -18.81138 -18.67719 -17.50484 -17.06518 -16.70594 -16.05409 -15.41488 -14.91982 -14.59993 -14.41006 -14.15521 -14.03428 -13.87461 -13.70967 -13.59706 -13.02169 -12.77648 -12.59995 -12.09352 -11.93238 -11.65836 -11.57746 -11.46026 -11.35564 -10.79587 -10.38966 -9.87134 -9.48640 -9.31788 -8.35224 -6.39453 -0.51040 0.02646 0.61757 0.96382 1.01446 1.25363 1.35673 1.44087 2.23980 2.27473 2.36441 3.00469 3.64999 4.00996 4.17005 4.36407 4.48573 4.54705 4.57328 4.70769 4.74530 4.94121 5.00728 5.09034 5.17032 5.32194 5.49670 5.71746 6.20171 6.61822 6.69128 7.19731 7.33682 8.80868 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.021837 B = 0.005082 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.909914 B = 5508.123610 C = 6322.931070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.234 3.766 3 H 0.030 0.970 4 C -0.525 4.525 5 H 0.045 0.955 6 C 0.024 3.976 7 N -0.939 5.939 8 Si 0.940 3.060 9 H -0.251 1.251 10 H -0.297 1.297 11 H -0.264 1.264 12 N -0.586 5.586 13 C 0.065 3.935 14 C 0.546 3.454 15 O -0.570 6.570 16 C -0.137 4.137 17 C -0.144 4.144 18 C -0.200 4.200 19 S 0.273 5.727 20 C -0.215 4.215 21 Br 0.013 6.987 22 H 0.042 0.958 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.268 0.732 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.199 0.801 30 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.683 -3.914 -22.827 23.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.130 3.870 3 H 0.048 0.952 4 C -0.563 4.563 5 H 0.063 0.937 6 C -0.175 4.175 7 N -0.579 5.579 8 Si 0.768 3.232 9 H -0.176 1.176 10 H -0.224 1.224 11 H -0.188 1.188 12 N -0.316 5.316 13 C -0.076 4.076 14 C 0.334 3.666 15 O -0.451 6.451 16 C -0.158 4.158 17 C -0.172 4.172 18 C -0.336 4.336 19 S 0.538 5.462 20 C -0.414 4.414 21 Br 0.098 6.902 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.092 0.908 25 H 0.077 0.923 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.216 0.784 30 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 2.122 -2.702 -23.702 23.950 hybrid contribution -1.159 0.495 2.281 2.606 sum 0.963 -2.207 -21.421 21.556 Atomic orbital electron populations 1.22304 0.96246 1.02536 0.99924 1.18976 0.91882 0.93363 0.82759 0.95183 1.21352 1.31641 1.13107 0.90200 0.93702 1.25631 0.97178 0.99408 0.95305 1.69998 1.47117 1.42182 0.98589 0.85992 0.80012 0.80209 0.77035 1.17609 1.22441 1.18846 1.47722 1.49251 1.13173 1.21453 1.22567 1.01422 0.80603 1.03024 1.18164 0.78843 0.85599 0.84014 1.90793 1.54593 1.21038 1.78671 1.20403 1.00759 0.98704 0.95973 1.22429 1.03340 0.94124 0.97275 1.26226 1.01826 1.05748 0.99802 1.82760 1.38155 1.10955 1.14313 1.26397 1.06293 1.02782 1.05974 1.96716 1.70211 1.26279 1.97002 0.93971 0.92522 0.90766 0.92266 0.89145 0.89111 0.91279 0.78441 0.76397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.22 8.67 71.98 0.62 -5.60 16 2 C 0.23 11.34 2.21 44.24 0.10 11.44 16 3 H 0.03 1.67 5.98 -2.39 -0.01 1.65 16 4 C -0.52 -29.72 8.53 25.60 0.22 -29.51 16 5 H 0.04 2.78 7.68 -2.91 -0.02 2.76 16 6 C 0.02 1.36 5.45 84.66 0.46 1.83 16 7 N -0.94 -58.02 13.96 21.45 0.30 -57.73 16 8 Si 0.94 45.45 24.37 68.60 1.67 47.12 16 9 H -0.25 -11.00 6.87 99.48 0.68 -10.32 16 10 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 11 H -0.26 -12.68 6.53 99.48 0.65 -12.03 16 12 N -0.59 -24.12 2.75 -831.06 -2.29 -26.40 16 13 C 0.07 1.95 7.50 127.77 0.96 2.91 16 14 C 0.55 22.89 7.61 86.56 0.66 23.55 16 15 O -0.57 -28.21 13.96 -4.20 -0.06 -28.27 16 16 C -0.14 -4.33 5.80 -19.85 -0.12 -4.44 16 17 C -0.14 -3.04 8.24 22.69 0.19 -2.85 16 18 C -0.20 -2.90 11.11 66.65 0.74 -2.16 16 19 S 0.27 4.89 23.01 -56.49 -1.30 3.59 16 20 C -0.21 -6.25 6.75 67.34 0.45 -5.80 16 21 Br 0.01 0.43 31.71 -20.37 -0.65 -0.21 16 22 H 0.04 1.79 3.27 -2.39 -0.01 1.78 16 23 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.07 2.73 7.67 -2.39 -0.02 2.72 16 25 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 26 H 0.09 1.96 6.97 -2.38 -0.02 1.95 16 27 H 0.09 2.31 5.52 -2.39 -0.01 2.30 16 28 H 0.07 2.34 7.11 -2.38 -0.02 2.32 16 29 H 0.20 3.36 3.92 -2.91 -0.01 3.35 16 30 H 0.22 1.19 8.06 -2.91 -0.02 1.17 16 Total: -1.00 -74.84 274.77 3.07 -71.77 By element: Atomic # 1 Polarization: -0.34 SS G_CDS: 1.11 Total: 0.77 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: 4.29 Total: -10.64 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -1.99 Total: -84.13 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.06 Total: -28.27 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.67 Total: 47.12 kcal Atomic # 16 Polarization: 4.89 SS G_CDS: -1.30 Total: 3.59 kcal Atomic # 35 Polarization: 0.43 SS G_CDS: -0.65 Total: -0.21 kcal Total: -74.84 3.07 -71.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336220366.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.047 kcal (2) G-P(sol) polarization free energy of solvation -74.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds