Wall clock time and date at job start Tue Mar 31 2020 10:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46897 * 111.00059 * 2 1 4 4 C 1.46898 * 111.00222 * 123.95702 * 2 1 3 5 5 C 1.52999 * 109.47116 * 169.99756 * 4 2 1 6 6 C 1.53001 * 109.46862 * 179.97438 * 5 4 2 7 7 C 1.53121 * 109.52216 * 185.00078 * 6 5 4 8 8 C 1.53037 * 109.27961 * 182.44405 * 7 6 5 9 9 N 1.46840 * 109.52188 * 59.18055 * 8 7 6 10 10 C 1.46908 * 110.99974 * 174.16350 * 9 8 7 11 11 C 1.50695 * 109.47144 * 169.99558 * 10 9 8 12 12 C 1.38642 * 119.74679 * 90.00514 * 11 10 9 13 13 C 1.37614 * 120.24874 * 180.02562 * 12 11 10 14 14 C 1.40719 * 119.74423 * 359.97438 * 13 12 11 15 15 C 1.41395 * 120.24714 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99748 * 335.60207 * 15 14 13 17 17 C 1.39938 * 120.00091 * 155.87285 * 15 14 13 18 18 N 1.30819 * 120.00176 * 342.02811 * 17 15 14 19 19 Si 1.86802 * 120.00037 * 162.02561 * 17 15 14 20 20 H 1.48500 * 109.47127 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47287 * 120.00096 * 19 17 15 22 22 H 1.48498 * 109.47059 * 240.00299 * 19 17 15 23 23 C 1.40718 * 119.51234 * 0.28541 * 14 13 12 24 24 C 1.37623 * 119.74436 * 359.46344 * 23 14 13 25 25 C 1.46848 * 111.19922 * 298.25487 * 9 8 7 26 26 C 1.53042 * 109.52061 * 61.74739 * 25 9 8 27 27 H 1.09002 * 109.46882 * 296.04337 * 1 2 3 28 28 H 1.09000 * 109.47534 * 56.04383 * 1 2 3 29 29 H 1.08999 * 109.47192 * 176.04435 * 1 2 3 30 30 H 1.08995 * 109.47153 * 183.95948 * 3 2 1 31 31 H 1.09007 * 109.47272 * 303.95691 * 3 2 1 32 32 H 1.09001 * 109.47136 * 63.95491 * 3 2 1 33 33 H 1.09007 * 109.47087 * 49.99682 * 4 2 1 34 34 H 1.08995 * 109.47049 * 290.00108 * 4 2 1 35 35 H 1.08994 * 109.46857 * 60.00065 * 5 4 2 36 36 H 1.09002 * 109.47217 * 299.99785 * 5 4 2 37 37 H 1.08997 * 109.52764 * 305.12628 * 6 5 4 38 38 H 1.08998 * 109.50510 * 62.49486 * 7 6 5 39 39 H 1.09003 * 109.53321 * 302.40726 * 7 6 5 40 40 H 1.08998 * 109.45742 * 299.16320 * 8 7 6 41 41 H 1.09005 * 109.45069 * 179.19129 * 8 7 6 42 42 H 1.09005 * 109.46924 * 49.99290 * 10 9 8 43 43 H 1.09006 * 109.46790 * 289.99985 * 10 9 8 44 44 H 1.08003 * 119.87748 * 0.02562 * 12 11 10 45 45 H 1.07997 * 120.13310 * 179.97438 * 13 12 11 46 46 H 0.97005 * 120.00336 * 179.97438 * 18 17 15 47 47 H 1.07999 * 120.12906 * 179.69972 * 23 14 13 48 48 H 1.07998 * 119.87902 * 180.28054 * 24 23 14 49 49 H 1.08996 * 109.46452 * 181.76461 * 25 9 8 50 50 H 1.09003 * 109.46466 * 301.72842 * 25 9 8 51 51 H 1.08997 * 109.49982 * 180.88362 * 26 25 9 52 52 H 1.08998 * 109.50243 * 60.76011 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5045 -0.9554 0.9702 6 6 4.0529 -1.7527 2.1553 7 6 5.5784 -1.8361 2.0539 8 6 6.1159 -2.6857 3.2077 9 7 5.5289 -4.0300 3.1421 10 6 6.1260 -4.9151 4.1512 11 6 5.3394 -6.1984 4.2224 12 6 5.6909 -7.2666 3.4115 13 6 4.9794 -8.4432 3.4677 14 6 3.8917 -8.5597 4.3529 15 6 3.1537 -9.7639 4.4197 16 1 3.1368 -10.4346 3.5733 17 6 2.4404 -10.0840 5.5803 18 7 2.7202 -9.4812 6.7072 19 14 1.0887 -11.3719 5.5207 20 1 0.9700 -11.9012 4.1383 21 1 1.4218 -12.4825 6.4486 22 1 -0.1999 -10.7563 5.9279 23 6 3.5406 -7.4672 5.1672 24 6 4.2696 -6.3019 5.0980 25 6 4.0683 -3.9793 3.2849 26 6 3.4697 -3.1683 2.1333 27 1 -0.3633 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0827 1.3432 -0.0710 31 1 1.5897 1.9164 -0.8525 32 1 1.7044 1.8723 0.9233 33 1 1.5089 -1.7407 1.1755 34 1 1.7976 -0.2249 2.0627 35 1 3.9909 0.0192 0.9322 36 1 3.7023 -1.4966 0.0449 37 1 3.7763 -1.2581 3.0864 38 1 6.0024 -0.8336 2.1118 39 1 5.8561 -2.2941 1.1045 40 1 5.8503 -2.2193 4.1564 41 1 7.2007 -2.7588 3.1300 42 1 6.1067 -4.4226 5.1235 43 1 7.1575 -5.1358 3.8762 44 1 6.5263 -7.1750 2.7331 45 1 5.2546 -9.2740 2.8349 46 1 2.2256 -9.7027 7.5117 47 1 2.7046 -7.5441 5.8466 48 1 4.0048 -5.4636 5.7253 49 1 3.6658 -4.9920 3.2636 50 1 3.8123 -3.5069 4.2334 51 1 2.3870 -3.1176 2.2483 52 1 3.7136 -3.6478 1.1853 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342755427.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:37 Heat of formation + Delta-G solvation = 7.443174 kcal Electronic energy + Delta-G solvation = -26453.461653 eV Core-core repulsion = 23030.416450 eV Total energy + Delta-G solvation = -3423.045203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.33868 -37.97484 -37.16516 -34.76150 -33.46328 -31.05823 -30.37640 -29.37261 -29.10801 -27.83751 -26.67016 -24.95854 -23.43031 -22.86994 -21.78000 -20.93428 -20.57676 -19.74092 -19.39361 -17.28375 -16.01270 -15.74743 -15.37947 -15.19928 -15.05177 -14.81885 -14.47421 -14.21886 -13.96494 -13.58884 -13.56011 -13.11671 -12.90720 -12.71474 -12.56641 -12.43930 -12.09517 -12.00816 -11.94777 -11.89082 -11.58148 -11.52442 -11.29927 -11.10514 -10.96681 -10.92051 -10.86681 -10.58149 -10.43218 -10.35702 -10.02291 -9.94124 -9.50221 -9.36463 -9.10926 -8.60420 -7.86775 -7.40867 -7.26078 -6.76403 -4.34154 2.72923 3.06578 3.09391 3.12421 3.17540 3.71525 3.93001 4.34916 4.65620 4.70528 4.83602 4.86343 4.98231 5.05265 5.14360 5.19657 5.33813 5.37945 5.42978 5.47857 5.57604 5.62980 5.63575 5.67356 5.71950 5.76409 5.79946 5.84655 5.95623 5.96848 6.03016 6.10891 6.19716 6.22632 6.32088 6.35033 6.41137 6.44505 6.60980 6.63286 6.78375 6.81060 6.96067 7.08230 7.28103 7.38846 7.56756 7.59873 7.63294 7.91137 8.06689 8.15214 8.31314 8.64775 8.90534 8.98572 10.17991 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013998 B = 0.002740 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.841541 B =10217.117563 C =11691.913367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.549 5.549 3 C 0.021 3.979 4 C 0.052 3.948 5 C -0.108 4.108 6 C -0.087 4.087 7 C -0.107 4.107 8 C 0.054 3.946 9 N -0.532 5.532 10 C 0.119 3.881 11 C -0.213 4.213 12 C -0.069 4.069 13 C -0.229 4.229 14 C 0.112 3.888 15 C -0.462 4.462 16 H 0.077 0.923 17 C 0.076 3.924 18 N -0.793 5.793 19 Si 0.906 3.094 20 H -0.260 1.260 21 H -0.275 1.275 22 H -0.272 1.272 23 C -0.166 4.166 24 C -0.094 4.094 25 C 0.056 3.944 26 C -0.110 4.110 27 H 0.023 0.977 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.023 0.977 33 H 0.079 0.921 34 H 0.031 0.969 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.024 0.976 41 H 0.068 0.932 42 H 0.021 0.979 43 H 0.064 0.936 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.279 0.721 47 H 0.116 0.884 48 H 0.081 0.919 49 H 0.095 0.905 50 H 0.021 0.979 51 H 0.061 0.939 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.903 17.460 -7.597 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.272 5.272 3 C -0.127 4.127 4 C -0.075 4.075 5 C -0.145 4.145 6 C -0.106 4.106 7 C -0.145 4.145 8 C -0.074 4.074 9 N -0.256 5.256 10 C -0.007 4.007 11 C -0.215 4.215 12 C -0.088 4.088 13 C -0.248 4.248 14 C 0.110 3.890 15 C -0.491 4.491 16 H 0.096 0.904 17 C -0.142 4.142 18 N -0.419 5.419 19 Si 0.730 3.270 20 H -0.184 1.184 21 H -0.200 1.200 22 H -0.197 1.197 23 C -0.186 4.186 24 C -0.112 4.112 25 C -0.072 4.072 26 C -0.148 4.148 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.097 0.903 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.043 0.957 41 H 0.087 0.913 42 H 0.039 0.961 43 H 0.082 0.918 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.090 0.910 47 H 0.134 0.866 48 H 0.099 0.901 49 H 0.113 0.887 50 H 0.039 0.961 51 H 0.079 0.921 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.701 17.044 -8.233 18.941 hybrid contribution -1.078 0.186 1.779 2.088 sum -1.778 17.230 -6.454 18.485 Atomic orbital electron populations 1.22383 0.87409 1.02425 1.00254 1.61995 1.07773 1.13789 1.43684 1.22431 1.01171 0.88924 1.00158 1.22257 0.96342 0.98279 0.90663 1.21616 0.93900 0.99975 0.99053 1.21199 0.95450 0.96228 0.97740 1.21584 0.94726 0.98653 0.99505 1.22048 0.99022 0.89650 0.96671 1.62096 1.04833 1.08659 1.50058 1.20733 0.97186 0.91358 0.91396 1.18860 1.02653 0.95012 1.04960 1.20339 0.98141 0.93178 0.97130 1.20969 0.99769 0.97421 1.06676 1.17628 0.89292 0.92407 0.89692 1.19630 1.25238 1.04530 0.99729 0.90443 1.25910 0.96713 0.96814 0.94727 1.69838 1.34862 1.37449 0.99729 0.86305 0.80742 0.80368 0.79578 1.18370 1.20026 1.19731 1.21274 1.01616 0.92081 1.03584 1.20518 0.96074 0.96851 0.97805 1.22154 0.87882 1.01640 0.95530 1.21694 0.98912 0.94196 0.99996 0.95810 0.91509 0.91183 0.91046 0.91653 0.95866 0.90257 0.95091 0.92325 0.90942 0.92018 0.92282 0.91095 0.95749 0.91348 0.96062 0.91752 0.89394 0.89114 0.90988 0.86609 0.90061 0.88668 0.96066 0.92055 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.57 60.06 0.57 0.77 16 2 N -0.55 -5.35 5.02 -251.26 -1.26 -6.61 16 3 C 0.02 0.17 9.32 60.06 0.56 0.73 16 4 C 0.05 0.52 4.72 -3.83 -0.02 0.50 16 5 C -0.11 -1.08 4.61 -26.73 -0.12 -1.20 16 6 C -0.09 -0.98 2.25 -90.49 -0.20 -1.19 16 7 C -0.11 -1.22 5.38 -26.65 -0.14 -1.36 16 8 C 0.05 0.72 5.42 -3.84 -0.02 0.70 16 9 N -0.53 -8.67 4.80 -236.11 -1.13 -9.80 16 10 C 0.12 2.15 5.42 -4.97 -0.03 2.12 16 11 C -0.21 -4.57 4.15 -104.33 -0.43 -5.01 16 12 C -0.07 -1.55 9.67 -39.66 -0.38 -1.93 16 13 C -0.23 -5.63 9.80 -38.87 -0.38 -6.01 16 14 C 0.11 2.98 5.57 -106.82 -0.60 2.39 16 15 C -0.46 -12.25 9.05 -37.74 -0.34 -12.59 16 16 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 17 C 0.08 1.91 5.14 -17.35 -0.09 1.82 16 18 N -0.79 -20.50 10.96 55.55 0.61 -19.89 16 19 Si 0.91 18.65 29.59 -169.99 -5.03 13.62 16 20 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 C -0.17 -4.27 8.70 -38.87 -0.34 -4.61 16 24 C -0.09 -2.14 7.75 -39.66 -0.31 -2.45 16 25 C 0.06 0.91 4.57 -3.83 -0.02 0.89 16 26 C -0.11 -1.48 5.08 -26.65 -0.14 -1.62 16 27 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 29 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 30 H 0.07 0.56 6.47 -51.93 -0.34 0.22 16 31 H 0.06 0.46 8.12 -51.92 -0.42 0.04 16 32 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.08 0.84 6.56 -51.93 -0.34 0.50 16 34 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 35 H 0.06 0.54 6.55 -51.93 -0.34 0.20 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.86 8.12 -51.93 -0.42 0.43 16 42 H 0.02 0.38 8.02 -51.93 -0.42 -0.04 16 43 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 44 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 45 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 46 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 47 H 0.12 3.09 6.16 -52.49 -0.32 2.77 16 48 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 49 H 0.10 1.86 5.64 -51.93 -0.29 1.56 16 50 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.06 0.77 6.71 -51.93 -0.35 0.43 16 52 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 396.31 15.07 5.97 5.97 Total: -1.00 -26.85 396.31 -12.82 -39.67 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -9.55 Total: 5.08 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: -2.42 Total: -28.03 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: -1.79 Total: -36.31 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -26.85 -12.82 -39.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342755427.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.109 kcal (2) G-P(sol) polarization free energy of solvation -26.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds