Wall clock time and date at job start Tue Mar 31 2020 10:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46897 * 111.00059 * 2 1 4 4 C 1.46898 * 111.00222 * 123.95702 * 2 1 3 5 5 C 1.52999 * 109.47116 * 169.99756 * 4 2 1 6 6 C 1.53001 * 109.46862 * 179.97438 * 5 4 2 7 7 C 1.53121 * 109.52216 * 185.00078 * 6 5 4 8 8 C 1.53037 * 109.27961 * 182.44405 * 7 6 5 9 9 N 1.46840 * 109.52188 * 59.18055 * 8 7 6 10 10 C 1.46908 * 110.99974 * 174.16350 * 9 8 7 11 11 C 1.50695 * 109.47144 * 169.99558 * 10 9 8 12 12 C 1.38642 * 119.74679 * 90.00514 * 11 10 9 13 13 C 1.37614 * 120.24874 * 180.02562 * 12 11 10 14 14 C 1.40719 * 119.74423 * 359.97438 * 13 12 11 15 15 C 1.41395 * 120.24714 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99748 * 335.60207 * 15 14 13 17 17 C 1.39938 * 120.00091 * 155.87285 * 15 14 13 18 18 N 1.30819 * 120.00176 * 342.02811 * 17 15 14 19 19 Si 1.86802 * 120.00037 * 162.02561 * 17 15 14 20 20 H 1.48500 * 109.47127 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47287 * 120.00096 * 19 17 15 22 22 H 1.48498 * 109.47059 * 240.00299 * 19 17 15 23 23 C 1.40718 * 119.51234 * 0.28541 * 14 13 12 24 24 C 1.37623 * 119.74436 * 359.46344 * 23 14 13 25 25 C 1.46848 * 111.19922 * 298.25487 * 9 8 7 26 26 C 1.53042 * 109.52061 * 61.74739 * 25 9 8 27 27 H 1.09002 * 109.46882 * 296.04337 * 1 2 3 28 28 H 1.09000 * 109.47534 * 56.04383 * 1 2 3 29 29 H 1.08999 * 109.47192 * 176.04435 * 1 2 3 30 30 H 1.08995 * 109.47153 * 183.95948 * 3 2 1 31 31 H 1.09007 * 109.47272 * 303.95691 * 3 2 1 32 32 H 1.09001 * 109.47136 * 63.95491 * 3 2 1 33 33 H 1.09007 * 109.47087 * 49.99682 * 4 2 1 34 34 H 1.08995 * 109.47049 * 290.00108 * 4 2 1 35 35 H 1.08994 * 109.46857 * 60.00065 * 5 4 2 36 36 H 1.09002 * 109.47217 * 299.99785 * 5 4 2 37 37 H 1.08997 * 109.52764 * 305.12628 * 6 5 4 38 38 H 1.08998 * 109.50510 * 62.49486 * 7 6 5 39 39 H 1.09003 * 109.53321 * 302.40726 * 7 6 5 40 40 H 1.08998 * 109.45742 * 299.16320 * 8 7 6 41 41 H 1.09005 * 109.45069 * 179.19129 * 8 7 6 42 42 H 1.09005 * 109.46924 * 49.99290 * 10 9 8 43 43 H 1.09006 * 109.46790 * 289.99985 * 10 9 8 44 44 H 1.08003 * 119.87748 * 0.02562 * 12 11 10 45 45 H 1.07997 * 120.13310 * 179.97438 * 13 12 11 46 46 H 0.97005 * 120.00336 * 179.97438 * 18 17 15 47 47 H 1.07999 * 120.12906 * 179.69972 * 23 14 13 48 48 H 1.07998 * 119.87902 * 180.28054 * 24 23 14 49 49 H 1.08996 * 109.46452 * 181.76461 * 25 9 8 50 50 H 1.09003 * 109.46466 * 301.72842 * 25 9 8 51 51 H 1.08997 * 109.49982 * 180.88362 * 26 25 9 52 52 H 1.08998 * 109.50243 * 60.76011 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5045 -0.9554 0.9702 6 6 4.0529 -1.7527 2.1553 7 6 5.5784 -1.8361 2.0539 8 6 6.1159 -2.6857 3.2077 9 7 5.5289 -4.0300 3.1421 10 6 6.1260 -4.9151 4.1512 11 6 5.3394 -6.1984 4.2224 12 6 5.6909 -7.2666 3.4115 13 6 4.9794 -8.4432 3.4677 14 6 3.8917 -8.5597 4.3529 15 6 3.1537 -9.7639 4.4197 16 1 3.1368 -10.4346 3.5733 17 6 2.4404 -10.0840 5.5803 18 7 2.7202 -9.4812 6.7072 19 14 1.0887 -11.3719 5.5207 20 1 0.9700 -11.9012 4.1383 21 1 1.4218 -12.4825 6.4486 22 1 -0.1999 -10.7563 5.9279 23 6 3.5406 -7.4672 5.1672 24 6 4.2696 -6.3019 5.0980 25 6 4.0683 -3.9793 3.2849 26 6 3.4697 -3.1683 2.1333 27 1 -0.3633 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0827 1.3432 -0.0710 31 1 1.5897 1.9164 -0.8525 32 1 1.7044 1.8723 0.9233 33 1 1.5089 -1.7407 1.1755 34 1 1.7976 -0.2249 2.0627 35 1 3.9909 0.0192 0.9322 36 1 3.7023 -1.4966 0.0449 37 1 3.7763 -1.2581 3.0864 38 1 6.0024 -0.8336 2.1118 39 1 5.8561 -2.2941 1.1045 40 1 5.8503 -2.2193 4.1564 41 1 7.2007 -2.7588 3.1300 42 1 6.1067 -4.4226 5.1235 43 1 7.1575 -5.1358 3.8762 44 1 6.5263 -7.1750 2.7331 45 1 5.2546 -9.2740 2.8349 46 1 2.2256 -9.7027 7.5117 47 1 2.7046 -7.5441 5.8466 48 1 4.0048 -5.4636 5.7253 49 1 3.6658 -4.9920 3.2636 50 1 3.8123 -3.5069 4.2334 51 1 2.3870 -3.1176 2.2483 52 1 3.7136 -3.6478 1.1853 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342755427.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:36 Heat of formation + Delta-G solvation = -6.214015 kcal Electronic energy + Delta-G solvation = -26454.053873 eV Core-core repulsion = 23030.416450 eV Total energy + Delta-G solvation = -3423.637423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.56697 -39.32197 -38.33059 -36.15186 -35.06543 -32.45405 -31.62139 -31.14744 -30.49556 -28.47961 -28.15966 -26.20516 -24.75551 -24.01490 -23.04250 -22.61385 -21.54216 -21.34635 -20.51283 -19.21648 -17.22263 -17.00444 -16.52612 -16.35544 -16.13473 -15.88966 -15.78033 -15.66313 -15.16393 -15.10327 -14.88258 -14.40141 -14.12775 -13.95181 -13.81182 -13.65866 -13.43294 -13.23563 -13.17175 -12.97587 -12.73503 -12.68672 -12.61284 -12.48291 -12.35112 -12.22047 -12.09628 -11.99576 -11.82417 -11.49940 -11.38644 -11.24735 -11.04067 -11.02072 -10.87592 -9.35712 -9.30814 -9.27103 -9.02030 -8.64004 -6.32546 0.93406 1.16521 1.37047 1.48613 1.52464 2.20245 2.67551 3.01999 3.20500 3.77043 3.81539 3.91566 3.95972 4.14605 4.24157 4.29202 4.31474 4.39264 4.42650 4.49316 4.54098 4.55760 4.59751 4.64845 4.66938 4.71726 4.72494 4.77155 4.86026 4.86341 4.98242 4.99688 5.02843 5.05046 5.07149 5.15199 5.16775 5.18168 5.26157 5.35499 5.35761 5.40109 5.48159 5.60041 5.71770 5.96854 6.09052 6.11100 6.11864 6.17805 6.30689 6.39848 6.41060 6.70891 6.95119 7.04676 8.32923 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013998 B = 0.002740 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.841541 B =10217.117563 C =11691.913367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.563 5.563 3 C 0.021 3.979 4 C 0.054 3.946 5 C -0.097 4.097 6 C -0.079 4.079 7 C -0.102 4.102 8 C 0.052 3.948 9 N -0.538 5.538 10 C 0.123 3.877 11 C -0.198 4.198 12 C -0.073 4.073 13 C -0.244 4.244 14 C 0.080 3.920 15 C -0.501 4.501 16 H 0.073 0.927 17 C 0.035 3.965 18 N -0.826 5.826 19 Si 0.981 3.019 20 H -0.259 1.259 21 H -0.265 1.265 22 H -0.264 1.264 23 C -0.188 4.188 24 C -0.092 4.092 25 C 0.060 3.940 26 C -0.104 4.104 27 H 0.025 0.975 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.025 0.975 33 H 0.068 0.932 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.027 0.973 41 H 0.081 0.919 42 H 0.026 0.974 43 H 0.079 0.921 44 H 0.113 0.887 45 H 0.094 0.906 46 H 0.287 0.713 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.058 0.942 50 H 0.017 0.983 51 H 0.065 0.935 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.396 19.489 -8.329 21.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.287 5.287 3 C -0.127 4.127 4 C -0.074 4.074 5 C -0.135 4.135 6 C -0.098 4.098 7 C -0.139 4.139 8 C -0.075 4.075 9 N -0.263 5.263 10 C -0.003 4.003 11 C -0.199 4.199 12 C -0.091 4.091 13 C -0.264 4.264 14 C 0.078 3.922 15 C -0.530 4.530 16 H 0.091 0.909 17 C -0.180 4.180 18 N -0.453 5.453 19 Si 0.801 3.199 20 H -0.182 1.182 21 H -0.190 1.190 22 H -0.189 1.189 23 C -0.208 4.208 24 C -0.111 4.111 25 C -0.068 4.068 26 C -0.142 4.142 27 H 0.044 0.956 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.045 0.955 41 H 0.100 0.900 42 H 0.045 0.955 43 H 0.097 0.903 44 H 0.131 0.869 45 H 0.112 0.888 46 H 0.098 0.902 47 H 0.116 0.884 48 H 0.113 0.887 49 H 0.076 0.924 50 H 0.036 0.964 51 H 0.083 0.917 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.180 19.093 -8.974 21.097 hybrid contribution -1.146 -0.310 1.975 2.304 sum -1.326 18.783 -6.999 20.088 Atomic orbital electron populations 1.22412 0.86824 1.02453 1.00855 1.62010 1.08507 1.14773 1.43451 1.22474 1.01418 0.88106 1.00701 1.22193 0.96330 0.97898 0.90941 1.21495 0.93874 1.00234 0.97854 1.21126 0.95584 0.94649 0.98487 1.21573 0.94437 0.99577 0.98346 1.22178 0.99709 0.87968 0.97666 1.62080 1.04612 1.10461 1.49140 1.20693 0.97274 0.89944 0.92423 1.19242 1.01470 0.96333 1.02846 1.20634 0.98444 0.92582 0.97464 1.21163 0.99863 0.98629 1.06743 1.17955 0.90398 0.92992 0.90852 1.19844 1.27476 1.05151 1.00550 0.90892 1.26748 0.98449 0.98951 0.93813 1.69886 1.35954 1.38990 1.00432 0.85188 0.77486 0.77604 0.79603 1.18234 1.18982 1.18857 1.21216 1.02152 0.93246 1.04183 1.20675 0.96075 0.96245 0.98096 1.22033 0.88232 0.99921 0.96625 1.21626 0.99167 0.95272 0.98096 0.95642 0.90366 0.91593 0.90657 0.90685 0.95686 0.91362 0.95114 0.90861 0.91758 0.91794 0.89676 0.91522 0.95492 0.90038 0.95544 0.90265 0.86867 0.88773 0.90219 0.88439 0.88711 0.92401 0.96436 0.91686 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.57 127.69 1.22 1.57 16 2 N -0.56 -10.05 5.02 -948.85 -4.76 -14.81 16 3 C 0.02 0.29 9.32 127.69 1.19 1.48 16 4 C 0.05 1.00 4.72 86.30 0.41 1.41 16 5 C -0.10 -1.72 4.61 30.59 0.14 -1.57 16 6 C -0.08 -1.61 2.25 -10.71 -0.02 -1.64 16 7 C -0.10 -1.99 5.38 30.65 0.16 -1.82 16 8 C 0.05 1.24 5.42 86.33 0.47 1.71 16 9 N -0.54 -16.58 4.80 -900.90 -4.32 -20.90 16 10 C 0.12 4.20 5.42 85.55 0.46 4.67 16 11 C -0.20 -8.39 4.15 -19.67 -0.08 -8.47 16 12 C -0.07 -3.24 9.67 22.22 0.21 -3.03 16 13 C -0.24 -12.36 9.80 22.73 0.22 -12.14 16 14 C 0.08 4.45 5.57 -21.29 -0.12 4.34 16 15 C -0.50 -27.76 9.05 23.46 0.21 -27.54 16 16 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 17 C 0.03 1.80 5.14 85.26 0.44 2.24 16 18 N -0.83 -44.13 10.96 21.82 0.24 -43.89 16 19 Si 0.98 39.01 29.59 68.60 2.03 41.04 16 20 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 21 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 22 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 23 C -0.19 -10.11 8.70 22.73 0.20 -9.91 16 24 C -0.09 -4.29 7.75 22.22 0.17 -4.12 16 25 C 0.06 1.93 4.57 86.33 0.39 2.32 16 26 C -0.10 -2.70 5.08 30.65 0.16 -2.55 16 27 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.08 1.00 8.12 -2.39 -0.02 0.99 16 29 H 0.07 1.05 8.12 -2.39 -0.02 1.03 16 30 H 0.07 0.98 6.47 -2.39 -0.02 0.96 16 31 H 0.07 0.89 8.12 -2.38 -0.02 0.87 16 32 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.07 1.40 6.56 -2.38 -0.02 1.38 16 34 H 0.03 0.57 8.12 -2.39 -0.02 0.55 16 35 H 0.07 1.11 6.55 -2.39 -0.02 1.10 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.08 1.75 8.12 -2.38 -0.02 1.73 16 42 H 0.03 0.88 8.02 -2.38 -0.02 0.86 16 43 H 0.08 2.49 8.08 -2.38 -0.02 2.47 16 44 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 45 H 0.09 4.55 8.06 -2.91 -0.02 4.53 16 46 H 0.29 13.80 8.30 -92.70 -0.77 13.03 16 47 H 0.10 5.50 6.16 -2.91 -0.02 5.48 16 48 H 0.09 4.07 8.06 -2.91 -0.02 4.05 16 49 H 0.06 2.30 5.64 -2.39 -0.01 2.28 16 50 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 51 H 0.06 1.63 6.71 -2.39 -0.02 1.61 16 52 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -59.65 396.31 -0.12 -59.77 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 0.85 Total: 31.86 kcal Atomic # 6 Polarization: -58.90 SS G_CDS: 5.84 Total: -53.06 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -8.85 Total: -79.61 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Total: -59.65 -0.12 -59.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342755427.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.556 kcal (2) G-P(sol) polarization free energy of solvation -59.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds