Wall clock time and date at job start Tue Mar 31 2020 10:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46903 * 111.00095 * 2 1 4 4 C 1.53001 * 109.46782 * 293.94989 * 3 2 1 5 5 C 1.53001 * 109.47019 * 184.22811 * 4 3 2 6 6 H 1.08998 * 109.46386 * 303.33346 * 5 4 3 7 7 C 1.53036 * 109.46029 * 63.31371 * 5 4 3 8 8 C 1.53118 * 109.28028 * 179.19150 * 7 5 4 9 9 C 1.53114 * 109.16146 * 302.34499 * 8 7 5 10 10 C 1.53040 * 109.27802 * 57.65324 * 9 8 7 11 11 N 1.46850 * 109.51292 * 300.81161 * 10 9 8 12 12 C 1.46902 * 110.99095 * 185.84892 * 11 10 9 13 13 C 1.46901 * 111.00034 * 123.94628 * 2 1 3 14 14 C 1.50707 * 109.46843 * 66.05119 * 13 2 1 15 15 C 1.38634 * 119.74649 * 269.97926 * 14 13 2 16 16 C 1.37621 * 120.24902 * 179.97438 * 15 14 13 17 17 C 1.40714 * 119.74169 * 0.02562 * 16 15 14 18 18 C 1.41393 * 120.24195 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00074 * 331.86731 * 18 17 16 20 20 C 1.39943 * 120.00063 * 151.85997 * 18 17 16 21 21 N 1.30825 * 120.00215 * 162.06176 * 20 18 17 22 22 Si 1.86800 * 120.00046 * 342.06879 * 20 18 17 23 23 H 1.48501 * 109.47198 * 95.26076 * 22 20 18 24 24 H 1.48502 * 109.47344 * 215.26031 * 22 20 18 25 25 H 1.48498 * 109.47156 * 335.26264 * 22 20 18 26 26 C 1.40711 * 119.51378 * 0.02562 * 17 16 15 27 27 C 1.37612 * 119.74621 * 359.97438 * 26 17 16 28 28 H 1.09001 * 109.47487 * 296.04746 * 1 2 3 29 29 H 1.09006 * 109.46973 * 56.05113 * 1 2 3 30 30 H 1.09003 * 109.47419 * 176.04756 * 1 2 3 31 31 H 1.08998 * 109.47142 * 53.95095 * 3 2 1 32 32 H 1.09000 * 109.47264 * 173.95300 * 3 2 1 33 33 H 1.09000 * 109.47330 * 304.22972 * 4 3 2 34 34 H 1.09008 * 109.47231 * 64.23202 * 4 3 2 35 35 H 1.08999 * 109.50218 * 299.13309 * 7 5 4 36 36 H 1.09006 * 109.50573 * 59.25460 * 7 5 4 37 37 H 1.09006 * 109.52189 * 62.24643 * 8 7 5 38 38 H 1.08999 * 109.52778 * 182.37629 * 8 7 5 39 39 H 1.08998 * 109.50647 * 177.59172 * 9 8 7 40 40 H 1.09000 * 109.50867 * 297.71108 * 9 8 7 41 41 H 1.08995 * 109.46400 * 60.83777 * 10 9 8 42 42 H 1.09004 * 109.46434 * 180.81802 * 10 9 8 43 43 H 1.09005 * 109.47034 * 289.45178 * 12 11 10 44 44 H 1.08998 * 109.47023 * 49.45201 * 12 11 10 45 45 H 1.08997 * 109.47101 * 169.45453 * 12 11 10 46 46 H 1.08997 * 109.47136 * 306.05270 * 13 2 1 47 47 H 1.09002 * 109.47414 * 186.04414 * 13 2 1 48 48 H 1.08004 * 119.88039 * 359.97438 * 15 14 13 49 49 H 1.07997 * 120.12884 * 180.30099 * 16 15 14 50 50 H 0.96997 * 120.00051 * 179.97438 * 21 20 18 51 51 H 1.08001 * 120.12599 * 179.97438 * 26 17 16 52 52 H 1.08001 * 119.87926 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.2687 3.4476 -1.3628 6 1 1.9444 4.0237 -0.4961 7 6 3.7928 3.3108 -1.3428 8 6 4.4263 4.7033 -1.4078 9 6 3.9402 5.4181 -2.6716 10 6 2.4118 5.4939 -2.6530 11 7 1.8542 4.1368 -2.5915 12 6 0.3903 4.1635 -2.7118 13 6 1.9954 -0.7658 1.1377 14 6 1.6369 -2.2204 0.9730 15 6 0.4466 -2.6991 1.4981 16 6 0.1087 -4.0254 1.3533 17 6 0.9771 -4.8963 0.6697 18 6 0.6408 -6.2610 0.5152 19 1 0.0136 -6.7487 1.2467 20 6 1.1204 -6.9796 -0.5857 21 7 1.1186 -8.2877 -0.5642 22 14 1.7636 -6.0711 -2.0858 23 1 3.2391 -5.9354 -1.9875 24 1 1.4173 -6.8333 -3.3124 25 1 1.1457 -4.7223 -2.1503 26 6 2.1831 -4.3995 0.1418 27 6 2.5005 -3.0697 0.2986 28 1 -0.3634 0.4513 0.9233 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3634 -1.0252 -0.0708 31 1 1.5611 1.9274 0.8309 32 1 3.0797 1.3444 0.1083 33 1 2.0016 1.4612 -2.1524 34 1 0.5480 2.1518 -1.3918 35 1 4.1015 2.8131 -0.4236 36 1 4.1168 2.7233 -2.2020 37 1 4.1338 5.2779 -0.5289 38 1 5.5118 4.6087 -1.4364 39 1 4.3542 6.4260 -2.7016 40 1 4.2664 4.8638 -3.5516 41 1 2.0869 6.0602 -1.7803 42 1 2.0617 5.9895 -3.5585 43 1 -0.0411 4.5868 -1.8047 44 1 0.1073 4.7751 -3.5684 45 1 0.0187 3.1484 -2.8514 46 1 1.5610 -0.3871 2.0628 47 1 3.0797 -0.6610 1.1757 48 1 -0.2182 -2.0289 2.0228 49 1 -0.8213 -4.3952 1.7589 50 1 1.4507 -8.7857 -1.3274 51 1 2.8571 -5.0593 -0.3843 52 1 3.4254 -2.6860 -0.1060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343552300.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:51 Heat of formation + Delta-G solvation = 12.761532 kcal Electronic energy + Delta-G solvation = -26476.849348 eV Core-core repulsion = 23054.034766 eV Total energy + Delta-G solvation = -3422.814582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.70491 -38.33990 -36.79318 -33.95170 -33.74052 -32.94018 -30.85480 -29.70742 -28.57403 -27.36365 -26.82485 -25.55143 -23.68524 -22.95362 -21.66501 -21.43300 -20.51529 -19.91054 -19.76616 -17.38483 -16.30897 -15.78397 -15.58422 -15.46800 -14.96716 -14.72180 -14.67297 -14.26271 -14.22938 -13.85276 -13.72290 -13.34768 -13.20404 -12.92048 -12.68625 -12.46521 -12.33921 -12.24873 -11.94525 -11.89914 -11.72633 -11.53823 -11.32502 -11.15128 -11.03951 -10.93644 -10.91499 -10.73064 -10.64626 -10.41022 -10.20945 -10.15741 -9.73879 -9.48920 -9.08559 -8.55197 -8.02099 -7.65056 -7.47001 -6.92698 -4.44885 2.59054 2.74159 3.15318 3.26372 3.38031 3.60052 4.02762 4.19631 4.48812 4.55816 4.63057 4.68341 4.80873 5.04129 5.07058 5.15747 5.17541 5.23733 5.30192 5.37578 5.44044 5.47376 5.48818 5.53230 5.60730 5.65489 5.68084 5.69509 5.76972 5.82387 5.88140 5.89043 5.92879 6.08671 6.09910 6.14676 6.17261 6.21400 6.29158 6.37411 6.59551 6.83594 6.88250 6.89157 6.93924 7.21405 7.34852 7.39302 7.49014 7.65462 7.86521 7.93351 8.16957 8.38769 8.69989 8.83918 10.09589 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020798 B = 0.002519 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.977306 B =11114.094260 C =11451.653840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.535 5.535 3 C 0.055 3.945 4 C -0.111 4.111 5 C 0.089 3.911 6 H 0.036 0.964 7 C -0.114 4.114 8 C -0.122 4.122 9 C -0.117 4.117 10 C 0.056 3.944 11 N -0.537 5.537 12 C 0.022 3.978 13 C 0.120 3.880 14 C -0.210 4.210 15 C -0.074 4.074 16 C -0.212 4.212 17 C 0.095 3.905 18 C -0.447 4.447 19 H 0.089 0.911 20 C 0.083 3.917 21 N -0.810 5.810 22 Si 0.914 3.086 23 H -0.271 1.271 24 H -0.293 1.293 25 H -0.242 1.242 26 C -0.242 4.242 27 C -0.052 4.052 28 H 0.015 0.985 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.024 0.976 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.023 0.977 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.024 0.976 47 H 0.065 0.935 48 H 0.088 0.912 49 H 0.098 0.902 50 H 0.285 0.715 51 H 0.098 0.902 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.012 24.900 -3.183 25.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.259 5.259 3 C -0.074 4.074 4 C -0.149 4.149 5 C -0.020 4.020 6 H 0.054 0.946 7 C -0.152 4.152 8 C -0.160 4.160 9 C -0.155 4.155 10 C -0.072 4.072 11 N -0.262 5.262 12 C -0.126 4.126 13 C -0.006 4.006 14 C -0.211 4.211 15 C -0.092 4.092 16 C -0.232 4.232 17 C 0.092 3.908 18 C -0.475 4.475 19 H 0.107 0.893 20 C -0.135 4.135 21 N -0.434 5.434 22 Si 0.741 3.259 23 H -0.198 1.198 24 H -0.221 1.221 25 H -0.165 1.165 26 C -0.261 4.261 27 C -0.071 4.071 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.042 0.958 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.047 0.953 42 H 0.091 0.909 43 H 0.042 0.958 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.042 0.958 47 H 0.084 0.916 48 H 0.106 0.894 49 H 0.116 0.884 50 H 0.095 0.905 51 H 0.116 0.884 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.368 24.134 -4.085 24.708 hybrid contribution -0.381 1.030 0.752 1.331 sum 2.988 25.163 -3.333 25.558 Atomic orbital electron populations 1.22419 0.87836 1.03092 0.98983 1.62085 1.07862 1.11611 1.44308 1.22139 1.00149 0.89137 0.95925 1.21706 1.00416 0.94092 0.98735 1.21618 0.95604 0.94812 0.89917 0.94583 1.21700 0.93798 0.96949 1.02743 1.21597 1.00237 0.96480 0.97696 1.21588 0.94662 1.00348 0.98912 1.22089 0.95437 0.89243 1.00427 1.61911 1.09680 1.17052 1.37575 1.22412 0.87387 1.02665 1.00122 1.20740 0.98523 0.91651 0.89728 1.18850 0.98517 0.93162 1.10597 1.20474 0.95209 0.95112 0.98446 1.20950 0.99985 0.93011 1.09223 1.17731 0.90141 0.92962 0.89991 1.19516 1.27138 0.92926 1.07964 0.89315 1.26181 0.92018 0.94665 1.00674 1.69698 1.34851 1.07632 1.31214 0.86286 0.79548 0.81261 0.78827 1.19768 1.22107 1.16496 1.20992 0.98855 0.95582 1.10707 1.20391 0.97305 0.93155 0.96273 0.96612 0.92255 0.90186 0.95824 0.90822 0.90065 0.91790 0.91177 0.90759 0.92518 0.91744 0.91773 0.91000 0.95261 0.90910 0.95844 0.91672 0.90682 0.95772 0.91614 0.89368 0.88414 0.90493 0.88398 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 8.93 60.06 0.54 0.90 16 2 N -0.53 -8.19 4.75 -244.36 -1.16 -9.35 16 3 C 0.06 0.67 4.78 -3.82 -0.02 0.65 16 4 C -0.11 -1.24 4.21 -26.73 -0.11 -1.35 16 5 C 0.09 0.88 1.92 -67.72 -0.13 0.75 16 6 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 7 C -0.11 -1.05 5.08 -26.65 -0.14 -1.18 16 8 C -0.12 -0.96 6.00 -26.61 -0.16 -1.12 16 9 C -0.12 -0.88 6.09 -26.65 -0.16 -1.04 16 10 C 0.06 0.46 5.46 -3.83 -0.02 0.44 16 11 N -0.54 -5.19 4.75 -234.92 -1.12 -6.30 16 12 C 0.02 0.19 8.89 60.07 0.53 0.73 16 13 C 0.12 1.98 5.11 -4.97 -0.03 1.95 16 14 C -0.21 -4.23 4.91 -104.33 -0.51 -4.74 16 15 C -0.07 -1.52 7.92 -39.66 -0.31 -1.84 16 16 C -0.21 -4.95 9.80 -38.87 -0.38 -5.33 16 17 C 0.09 2.43 5.15 -106.83 -0.55 1.88 16 18 C -0.45 -12.24 9.58 -37.74 -0.36 -12.60 16 19 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 20 C 0.08 2.22 5.42 -17.34 -0.09 2.13 16 21 N -0.81 -21.86 13.93 55.55 0.77 -21.09 16 22 Si 0.91 21.36 24.46 -169.99 -4.16 17.21 16 23 H -0.27 -6.18 6.69 56.52 0.38 -5.80 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 25 H -0.24 -5.84 6.80 56.52 0.38 -5.46 16 26 C -0.24 -5.92 7.14 -38.88 -0.28 -6.20 16 27 C -0.05 -1.15 9.67 -39.66 -0.38 -1.53 16 28 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.78 6.39 -51.93 -0.33 0.45 16 30 H 0.08 1.36 6.16 -51.93 -0.32 1.04 16 31 H 0.02 0.28 8.12 -51.93 -0.42 -0.14 16 32 H 0.07 0.86 6.12 -51.93 -0.32 0.54 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.71 4.80 -51.92 -0.25 0.46 16 35 H 0.07 0.63 6.47 -51.93 -0.34 0.29 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.07 0.53 8.01 -51.93 -0.42 0.12 16 43 H 0.02 0.20 8.12 -51.93 -0.42 -0.23 16 44 H 0.06 0.49 7.98 -51.93 -0.41 0.08 16 45 H 0.07 0.68 6.53 -51.93 -0.34 0.34 16 46 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 47 H 0.07 1.02 7.87 -51.93 -0.41 0.61 16 48 H 0.09 1.61 8.03 -52.48 -0.42 1.19 16 49 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 50 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 51 H 0.10 2.41 4.48 -52.49 -0.24 2.17 16 52 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 387.42 15.07 5.84 5.84 Total: -1.00 -27.51 387.42 -11.69 -39.20 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -9.30 Total: 2.02 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: -2.57 Total: -27.52 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: -1.50 Total: -36.74 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.16 Total: 17.21 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -27.51 -11.69 -39.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343552300.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.965 kcal (2) G-P(sol) polarization free energy of solvation -27.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds