Wall clock time and date at job start Tue Mar 31 2020 10:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46903 * 111.00095 * 2 1 4 4 C 1.53001 * 109.46782 * 293.94989 * 3 2 1 5 5 C 1.53001 * 109.47019 * 184.22811 * 4 3 2 6 6 H 1.08998 * 109.46386 * 303.33346 * 5 4 3 7 7 C 1.53036 * 109.46029 * 63.31371 * 5 4 3 8 8 C 1.53118 * 109.28028 * 179.19150 * 7 5 4 9 9 C 1.53114 * 109.16146 * 302.34499 * 8 7 5 10 10 C 1.53040 * 109.27802 * 57.65324 * 9 8 7 11 11 N 1.46850 * 109.51292 * 300.81161 * 10 9 8 12 12 C 1.46902 * 110.99095 * 185.84892 * 11 10 9 13 13 C 1.46901 * 111.00034 * 123.94628 * 2 1 3 14 14 C 1.50707 * 109.46843 * 66.05119 * 13 2 1 15 15 C 1.38634 * 119.74649 * 269.97926 * 14 13 2 16 16 C 1.37621 * 120.24902 * 179.97438 * 15 14 13 17 17 C 1.40714 * 119.74169 * 0.02562 * 16 15 14 18 18 C 1.41393 * 120.24195 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00074 * 331.86731 * 18 17 16 20 20 C 1.39943 * 120.00063 * 151.85997 * 18 17 16 21 21 N 1.30825 * 120.00215 * 162.06176 * 20 18 17 22 22 Si 1.86800 * 120.00046 * 342.06879 * 20 18 17 23 23 H 1.48501 * 109.47198 * 95.26076 * 22 20 18 24 24 H 1.48502 * 109.47344 * 215.26031 * 22 20 18 25 25 H 1.48498 * 109.47156 * 335.26264 * 22 20 18 26 26 C 1.40711 * 119.51378 * 0.02562 * 17 16 15 27 27 C 1.37612 * 119.74621 * 359.97438 * 26 17 16 28 28 H 1.09001 * 109.47487 * 296.04746 * 1 2 3 29 29 H 1.09006 * 109.46973 * 56.05113 * 1 2 3 30 30 H 1.09003 * 109.47419 * 176.04756 * 1 2 3 31 31 H 1.08998 * 109.47142 * 53.95095 * 3 2 1 32 32 H 1.09000 * 109.47264 * 173.95300 * 3 2 1 33 33 H 1.09000 * 109.47330 * 304.22972 * 4 3 2 34 34 H 1.09008 * 109.47231 * 64.23202 * 4 3 2 35 35 H 1.08999 * 109.50218 * 299.13309 * 7 5 4 36 36 H 1.09006 * 109.50573 * 59.25460 * 7 5 4 37 37 H 1.09006 * 109.52189 * 62.24643 * 8 7 5 38 38 H 1.08999 * 109.52778 * 182.37629 * 8 7 5 39 39 H 1.08998 * 109.50647 * 177.59172 * 9 8 7 40 40 H 1.09000 * 109.50867 * 297.71108 * 9 8 7 41 41 H 1.08995 * 109.46400 * 60.83777 * 10 9 8 42 42 H 1.09004 * 109.46434 * 180.81802 * 10 9 8 43 43 H 1.09005 * 109.47034 * 289.45178 * 12 11 10 44 44 H 1.08998 * 109.47023 * 49.45201 * 12 11 10 45 45 H 1.08997 * 109.47101 * 169.45453 * 12 11 10 46 46 H 1.08997 * 109.47136 * 306.05270 * 13 2 1 47 47 H 1.09002 * 109.47414 * 186.04414 * 13 2 1 48 48 H 1.08004 * 119.88039 * 359.97438 * 15 14 13 49 49 H 1.07997 * 120.12884 * 180.30099 * 16 15 14 50 50 H 0.96997 * 120.00051 * 179.97438 * 21 20 18 51 51 H 1.08001 * 120.12599 * 179.97438 * 26 17 16 52 52 H 1.08001 * 119.87926 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.2687 3.4476 -1.3628 6 1 1.9444 4.0237 -0.4961 7 6 3.7928 3.3108 -1.3428 8 6 4.4263 4.7033 -1.4078 9 6 3.9402 5.4181 -2.6716 10 6 2.4118 5.4939 -2.6530 11 7 1.8542 4.1368 -2.5915 12 6 0.3903 4.1635 -2.7118 13 6 1.9954 -0.7658 1.1377 14 6 1.6369 -2.2204 0.9730 15 6 0.4466 -2.6991 1.4981 16 6 0.1087 -4.0254 1.3533 17 6 0.9771 -4.8963 0.6697 18 6 0.6408 -6.2610 0.5152 19 1 0.0136 -6.7487 1.2467 20 6 1.1204 -6.9796 -0.5857 21 7 1.1186 -8.2877 -0.5642 22 14 1.7636 -6.0711 -2.0858 23 1 3.2391 -5.9354 -1.9875 24 1 1.4173 -6.8333 -3.3124 25 1 1.1457 -4.7223 -2.1503 26 6 2.1831 -4.3995 0.1418 27 6 2.5005 -3.0697 0.2986 28 1 -0.3634 0.4513 0.9233 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3634 -1.0252 -0.0708 31 1 1.5611 1.9274 0.8309 32 1 3.0797 1.3444 0.1083 33 1 2.0016 1.4612 -2.1524 34 1 0.5480 2.1518 -1.3918 35 1 4.1015 2.8131 -0.4236 36 1 4.1168 2.7233 -2.2020 37 1 4.1338 5.2779 -0.5289 38 1 5.5118 4.6087 -1.4364 39 1 4.3542 6.4260 -2.7016 40 1 4.2664 4.8638 -3.5516 41 1 2.0869 6.0602 -1.7803 42 1 2.0617 5.9895 -3.5585 43 1 -0.0411 4.5868 -1.8047 44 1 0.1073 4.7751 -3.5684 45 1 0.0187 3.1484 -2.8514 46 1 1.5610 -0.3871 2.0628 47 1 3.0797 -0.6610 1.1757 48 1 -0.2182 -2.0289 2.0228 49 1 -0.8213 -4.3952 1.7589 50 1 1.4507 -8.7857 -1.3274 51 1 2.8571 -5.0593 -0.3843 52 1 3.4254 -2.6860 -0.1060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343552300.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:50 Heat of formation + Delta-G solvation = -2.786695 kcal Electronic energy + Delta-G solvation = -26477.523570 eV Core-core repulsion = 23054.034766 eV Total energy + Delta-G solvation = -3423.488804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.48598 -39.89586 -38.12487 -35.59299 -34.53222 -34.03142 -32.43951 -31.50407 -29.58331 -28.71743 -27.55023 -26.85627 -24.91292 -23.80388 -23.28943 -22.71561 -21.51459 -21.35711 -20.57491 -19.33748 -17.52433 -17.14711 -16.62243 -16.39712 -16.09198 -16.00578 -15.64680 -15.57327 -15.34193 -15.11681 -14.98369 -14.56882 -14.46954 -14.07624 -14.04755 -13.75498 -13.66797 -13.19695 -13.09198 -13.02469 -12.76469 -12.70023 -12.58947 -12.48085 -12.40834 -12.26885 -12.01094 -11.93380 -11.71318 -11.60552 -11.52256 -11.35600 -11.16531 -10.95576 -10.94308 -9.45546 -9.40517 -9.24388 -9.09293 -8.90141 -6.47684 0.78277 0.91122 1.26378 1.40640 1.49622 2.12702 2.54560 2.89542 3.21935 3.61516 3.79326 3.91222 3.99323 4.12460 4.14519 4.21322 4.27694 4.33720 4.41960 4.43867 4.45635 4.51398 4.54922 4.57619 4.62765 4.67905 4.70555 4.73712 4.77204 4.83428 4.85418 4.89662 5.02467 5.06124 5.08129 5.09519 5.11499 5.11866 5.17599 5.26500 5.33292 5.35198 5.36972 5.52052 5.64524 5.78734 5.92325 6.06222 6.15480 6.19718 6.23332 6.28033 6.33273 6.44707 6.76877 6.86483 8.18578 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020798 B = 0.002519 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.977306 B =11114.094260 C =11451.653840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.550 5.550 3 C 0.060 3.940 4 C -0.102 4.102 5 C 0.094 3.906 6 H 0.037 0.963 7 C -0.114 4.114 8 C -0.121 4.121 9 C -0.116 4.116 10 C 0.055 3.945 11 N -0.552 5.552 12 C 0.023 3.977 13 C 0.122 3.878 14 C -0.185 4.185 15 C -0.069 4.069 16 C -0.224 4.224 17 C 0.072 3.928 18 C -0.486 4.486 19 H 0.055 0.945 20 C 0.047 3.953 21 N -0.852 5.852 22 Si 0.968 3.032 23 H -0.260 1.260 24 H -0.279 1.279 25 H -0.255 1.255 26 C -0.254 4.254 27 C -0.062 4.062 28 H 0.029 0.971 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.034 0.966 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.031 0.969 42 H 0.080 0.920 43 H 0.025 0.975 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.040 0.960 47 H 0.081 0.919 48 H 0.120 0.880 49 H 0.098 0.902 50 H 0.293 0.707 51 H 0.093 0.907 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.057 28.956 -3.416 29.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.274 5.274 3 C -0.068 4.068 4 C -0.140 4.140 5 C -0.014 4.014 6 H 0.055 0.945 7 C -0.151 4.151 8 C -0.158 4.158 9 C -0.154 4.154 10 C -0.073 4.073 11 N -0.277 5.277 12 C -0.125 4.125 13 C -0.005 4.005 14 C -0.186 4.186 15 C -0.088 4.088 16 C -0.244 4.244 17 C 0.069 3.931 18 C -0.516 4.516 19 H 0.073 0.927 20 C -0.167 4.167 21 N -0.478 5.478 22 Si 0.792 3.208 23 H -0.186 1.186 24 H -0.206 1.206 25 H -0.179 1.179 26 C -0.273 4.273 27 C -0.081 4.081 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.049 0.951 42 H 0.098 0.902 43 H 0.044 0.956 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.058 0.942 47 H 0.099 0.901 48 H 0.138 0.862 49 H 0.117 0.883 50 H 0.103 0.897 51 H 0.110 0.890 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.415 28.199 -4.315 28.867 hybrid contribution -0.729 0.047 0.929 1.182 sum 3.685 28.246 -3.386 28.686 Atomic orbital electron populations 1.22378 0.87605 1.01805 1.00351 1.61977 1.08232 1.13524 1.43716 1.22148 1.00533 0.87410 0.96661 1.21588 1.00406 0.94529 0.97487 1.21534 0.95858 0.93940 0.90117 0.94532 1.21688 0.93457 0.97715 1.02283 1.21592 1.00593 0.95658 0.97999 1.21589 0.94303 1.01101 0.98368 1.22148 0.95774 0.88482 1.00880 1.61924 1.10246 1.18038 1.37461 1.22411 0.86974 1.02443 1.00696 1.20721 0.99761 0.89055 0.90914 1.19387 0.97013 0.95289 1.06939 1.20788 0.95874 0.94258 0.97872 1.21151 0.99967 0.94170 1.09069 1.17877 0.91275 0.92633 0.91308 1.19490 1.28963 0.94364 1.08763 0.92724 1.26797 0.92223 0.95214 1.02436 1.69722 1.37061 1.08575 1.32459 0.85459 0.79417 0.79436 0.76454 1.18580 1.20612 1.17920 1.21097 0.98380 0.96872 1.10941 1.20730 0.98680 0.92295 0.96352 0.95253 0.90959 0.92735 0.94772 0.90042 0.91961 0.91814 0.90835 0.92075 0.92072 0.91045 0.90202 0.91885 0.95066 0.90168 0.95597 0.90684 0.91427 0.94232 0.90051 0.86242 0.88340 0.89665 0.88951 0.86438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 8.93 127.69 1.14 1.84 16 2 N -0.55 -14.87 4.75 -927.03 -4.41 -19.28 16 3 C 0.06 1.25 4.78 86.30 0.41 1.67 16 4 C -0.10 -2.02 4.21 30.59 0.13 -1.89 16 5 C 0.09 1.62 1.92 44.94 0.09 1.71 16 6 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 7 C -0.11 -1.82 5.08 30.65 0.16 -1.66 16 8 C -0.12 -1.58 6.00 30.67 0.18 -1.39 16 9 C -0.12 -1.46 6.09 30.65 0.19 -1.27 16 10 C 0.05 0.76 5.46 86.33 0.47 1.23 16 11 N -0.55 -9.47 4.75 -897.15 -4.26 -13.72 16 12 C 0.02 0.35 8.89 127.69 1.13 1.48 16 13 C 0.12 3.51 5.11 85.56 0.44 3.95 16 14 C -0.18 -6.90 4.91 -19.67 -0.10 -7.00 16 15 C -0.07 -2.72 7.92 22.22 0.18 -2.55 16 16 C -0.22 -10.49 9.80 22.73 0.22 -10.26 16 17 C 0.07 3.75 5.15 -21.29 -0.11 3.64 16 18 C -0.49 -28.13 9.58 23.46 0.22 -27.91 16 19 H 0.05 3.39 8.06 -2.91 -0.02 3.36 16 20 C 0.05 2.63 5.42 85.26 0.46 3.09 16 21 N -0.85 -48.04 13.93 21.83 0.30 -47.74 16 22 Si 0.97 44.85 24.46 68.60 1.68 46.53 16 23 H -0.26 -11.43 6.69 99.48 0.67 -10.77 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.26 -12.22 6.80 99.48 0.68 -11.54 16 26 C -0.25 -12.33 7.14 22.73 0.16 -12.16 16 27 C -0.06 -2.57 9.67 22.22 0.21 -2.36 16 28 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 1.69 6.39 -2.38 -0.02 1.68 16 30 H 0.05 1.71 6.16 -2.39 -0.01 1.70 16 31 H 0.03 0.67 8.12 -2.39 -0.02 0.65 16 32 H 0.08 1.59 6.12 -2.39 -0.01 1.58 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 1.26 4.80 -2.38 -0.01 1.25 16 35 H 0.07 1.10 6.47 -2.39 -0.02 1.09 16 36 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.08 0.98 8.01 -2.38 -0.02 0.96 16 43 H 0.03 0.38 8.12 -2.38 -0.02 0.36 16 44 H 0.07 0.97 7.98 -2.39 -0.02 0.96 16 45 H 0.07 1.12 6.53 -2.39 -0.02 1.10 16 46 H 0.04 1.05 8.06 -2.39 -0.02 1.03 16 47 H 0.08 2.13 7.87 -2.39 -0.02 2.11 16 48 H 0.12 3.94 8.03 -2.91 -0.02 3.92 16 49 H 0.10 4.48 8.06 -2.91 -0.02 4.45 16 50 H 0.29 14.85 8.30 -92.71 -0.77 14.08 16 51 H 0.09 4.53 4.48 -2.91 -0.01 4.52 16 52 H 0.12 4.27 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -60.99 387.42 -0.29 -61.28 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.80 Total: 22.78 kcal Atomic # 6 Polarization: -55.44 SS G_CDS: 5.59 Total: -49.84 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -8.36 Total: -80.74 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.68 Total: 46.53 kcal Total: -60.99 -0.29 -61.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343552300.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.494 kcal (2) G-P(sol) polarization free energy of solvation -60.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds