Wall clock time and date at job start Tue Mar 31 2020 11:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.47045 * 2 1 4 4 S 1.70612 * 124.52194 * 270.02323 * 3 2 1 5 5 C 1.75827 * 91.57236 * 179.97438 * 4 3 2 6 6 C 1.46577 * 125.45405 * 180.02562 * 5 4 3 7 7 O 1.21703 * 120.00224 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99582 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72448 * 8 6 5 10 10 C 1.50703 * 109.47138 * 180.28062 * 9 8 6 11 11 H 1.08001 * 120.00037 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99824 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00502 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99575 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47135 * 90.00187 * 14 12 10 16 16 H 1.48500 * 109.46751 * 210.00163 * 14 12 10 17 17 H 1.48503 * 109.47215 * 329.99996 * 14 12 10 18 18 C 1.36669 * 109.09516 * 0.26689 * 5 4 3 19 19 C 1.33862 * 124.51737 * 89.98826 * 3 2 1 20 20 Br 1.89100 * 122.46074 * 0.02562 * 19 3 2 21 21 H 1.09003 * 109.46636 * 300.00008 * 1 2 3 22 22 H 1.09005 * 109.47375 * 59.99499 * 1 2 3 23 23 H 1.08998 * 109.47147 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46636 * 239.99992 * 2 1 3 25 25 H 1.09000 * 109.46937 * 120.00343 * 2 1 3 26 26 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 27 27 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 28 28 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 29 29 H 0.96997 * 120.00009 * 180.02562 * 13 12 10 30 30 H 1.08004 * 123.35560 * 179.69631 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 16 2.3541 2.3326 -1.4057 5 6 2.8455 3.7238 -0.4494 6 6 3.2988 5.0091 -0.9889 7 8 3.6169 5.9083 -0.2329 8 7 3.3631 5.1952 -2.3222 9 6 3.8103 6.4818 -2.8614 10 6 3.7851 6.4314 -4.3674 11 1 3.4680 5.5309 -4.8723 12 6 4.1677 7.5347 -5.1006 13 7 4.5552 8.6308 -4.4858 14 14 4.1370 7.4719 -6.9673 15 1 2.8075 7.9177 -7.4558 16 1 5.1897 8.3677 -7.5100 17 1 4.3896 6.0803 -7.4200 18 6 2.7424 3.4132 0.8776 19 6 2.2850 2.1361 1.1030 20 35 2.0388 1.4387 2.8434 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.1092 4.4787 -2.9248 27 1 3.1457 7.2726 -2.5132 28 1 4.8259 6.6850 -2.5217 29 1 4.8241 9.4069 -5.0016 30 1 2.9925 4.1030 1.6701 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351588452.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:12 Heat of formation + Delta-G solvation = -21.631643 kcal Electronic energy + Delta-G solvation = -15716.412482 eV Core-core repulsion = 12876.947795 eV Total energy + Delta-G solvation = -2839.464686 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.21386 -37.98712 -34.34126 -33.95213 -32.41722 -31.17182 -28.85752 -27.28393 -25.10294 -22.89807 -22.39483 -20.57608 -19.18384 -17.93286 -16.69892 -15.88425 -15.26891 -14.93768 -14.75080 -14.45763 -14.18014 -13.86317 -13.35596 -12.88895 -12.53734 -12.32287 -12.05904 -11.86981 -11.86179 -11.41473 -11.04483 -11.01279 -10.93250 -10.75952 -10.37481 -10.35268 -9.47499 -9.41117 -8.83352 -8.77695 -8.57323 -8.00251 -6.21082 -4.28722 0.40646 0.99317 1.49088 2.09645 2.10864 3.22087 3.28213 3.30555 3.66106 3.89775 4.31225 4.38625 4.69778 4.96550 5.11099 5.15327 5.24601 5.39021 5.53890 5.61275 5.68418 5.89854 5.91890 6.07140 7.20600 7.25023 7.43382 7.57885 7.89672 8.45193 8.67039 8.90269 9.37651 10.89090 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.030831 B = 0.003226 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.954465 B = 8677.993011 C = 9485.400101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.060 4.060 3 C -0.181 4.181 4 S 0.246 5.754 5 C -0.240 4.240 6 C 0.571 3.429 7 O -0.538 6.538 8 N -0.703 5.703 9 C 0.249 3.751 10 C -0.546 4.546 11 H 0.064 0.936 12 C 0.065 3.935 13 N -0.884 5.884 14 Si 0.905 3.095 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.272 1.272 18 C -0.050 4.050 19 C -0.116 4.116 20 Br -0.032 7.032 21 H 0.061 0.939 22 H 0.059 0.941 23 H 0.064 0.936 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.388 0.612 27 H 0.031 0.969 28 H 0.032 0.968 29 H 0.267 0.733 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.548 -20.142 11.174 24.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 C -0.303 4.303 4 S 0.513 5.487 5 C -0.361 4.361 6 C 0.354 3.646 7 O -0.418 6.418 8 N -0.351 5.351 9 C 0.129 3.871 10 C -0.585 4.585 11 H 0.082 0.918 12 C -0.139 4.139 13 N -0.521 5.521 14 Si 0.732 3.268 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.197 1.197 18 C -0.083 4.083 19 C -0.209 4.209 20 Br 0.052 6.948 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.099 0.901 25 H 0.107 0.893 26 H 0.221 0.779 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.412 -19.791 10.713 23.694 hybrid contribution 0.078 0.204 -0.060 0.227 sum -7.334 -19.586 10.652 23.471 Atomic orbital electron populations 1.21779 0.93610 1.02338 1.02839 1.20270 0.96834 0.88762 1.04045 1.24218 1.06295 1.02523 0.97267 1.83166 1.58270 1.01601 1.05619 1.24975 1.13632 1.00095 0.97443 1.16932 0.79197 0.84984 0.83472 1.90808 1.50210 1.42520 1.58226 1.46419 1.65243 1.18759 1.04651 1.19217 0.95826 0.78627 0.93406 1.21193 1.47088 0.99819 0.90361 0.91821 1.24940 0.94575 0.95002 0.99351 1.69968 1.43007 1.03093 1.36055 0.86399 0.77941 0.78163 0.84339 1.20386 1.20938 1.19674 1.20492 0.97251 0.94427 0.96108 1.20388 1.12040 0.96731 0.91771 1.96637 1.96439 1.85475 1.16233 0.91947 0.92215 0.91666 0.90132 0.89283 0.77918 0.95056 0.95033 0.92338 0.82229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.90 37.16 0.37 -0.74 16 2 C -0.06 -0.50 6.01 -27.88 -0.17 -0.67 16 3 C -0.18 -2.02 5.53 -35.84 -0.20 -2.22 16 4 S 0.25 2.99 22.10 -107.50 -2.38 0.62 16 5 C -0.24 -3.89 6.45 -36.79 -0.24 -4.13 16 6 C 0.57 11.89 7.78 -12.90 -0.10 11.79 16 7 O -0.54 -13.20 16.84 5.19 0.09 -13.11 16 8 N -0.70 -15.05 5.54 -62.83 -0.35 -15.40 16 9 C 0.25 6.56 5.43 -5.19 -0.03 6.54 16 10 C -0.55 -14.65 9.28 -34.44 -0.32 -14.97 16 11 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 12 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 13 N -0.88 -25.73 13.29 55.43 0.74 -24.99 16 14 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 18 C -0.05 -0.75 9.86 -40.41 -0.40 -1.15 16 19 C -0.12 -1.46 6.15 -41.38 -0.25 -1.72 16 20 Br -0.03 -0.34 32.62 -68.01 -2.22 -2.56 16 21 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.09 0.71 7.24 -51.93 -0.38 0.33 16 26 H 0.39 7.19 7.43 -40.82 -0.30 6.89 16 27 H 0.03 0.90 8.14 -51.92 -0.42 0.48 16 28 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.27 7.27 8.31 -40.82 -0.34 6.94 16 30 H 0.16 2.39 8.06 -52.48 -0.42 1.97 16 LS Contribution 300.58 15.07 4.53 4.53 Total: -1.00 -30.67 300.58 -9.22 -39.89 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -3.17 Total: 1.08 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -1.43 Total: -5.58 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.39 Total: -40.40 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.09 Total: -13.11 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -2.38 Total: 0.62 kcal Atomic # 35 Polarization: -0.34 SS G_CDS: -2.22 Total: -2.56 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.67 -9.22 -39.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351588452.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.259 kcal (2) G-P(sol) polarization free energy of solvation -30.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds