Wall clock time and date at job start Tue Mar 31 2020 11:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.47045 * 2 1 4 4 S 1.70612 * 124.52194 * 270.02323 * 3 2 1 5 5 C 1.75827 * 91.57236 * 179.97438 * 4 3 2 6 6 C 1.46577 * 125.45405 * 180.02562 * 5 4 3 7 7 O 1.21703 * 120.00224 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99582 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72448 * 8 6 5 10 10 C 1.50703 * 109.47138 * 180.28062 * 9 8 6 11 11 H 1.08001 * 120.00037 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99824 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00502 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99575 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47135 * 90.00187 * 14 12 10 16 16 H 1.48500 * 109.46751 * 210.00163 * 14 12 10 17 17 H 1.48503 * 109.47215 * 329.99996 * 14 12 10 18 18 C 1.36669 * 109.09516 * 0.26689 * 5 4 3 19 19 C 1.33862 * 124.51737 * 89.98826 * 3 2 1 20 20 Br 1.89100 * 122.46074 * 0.02562 * 19 3 2 21 21 H 1.09003 * 109.46636 * 300.00008 * 1 2 3 22 22 H 1.09005 * 109.47375 * 59.99499 * 1 2 3 23 23 H 1.08998 * 109.47147 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46636 * 239.99992 * 2 1 3 25 25 H 1.09000 * 109.46937 * 120.00343 * 2 1 3 26 26 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 27 27 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 28 28 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 29 29 H 0.96997 * 120.00009 * 180.02562 * 13 12 10 30 30 H 1.08004 * 123.35560 * 179.69631 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 16 2.3541 2.3326 -1.4057 5 6 2.8455 3.7238 -0.4494 6 6 3.2988 5.0091 -0.9889 7 8 3.6169 5.9083 -0.2329 8 7 3.3631 5.1952 -2.3222 9 6 3.8103 6.4818 -2.8614 10 6 3.7851 6.4314 -4.3674 11 1 3.4680 5.5309 -4.8723 12 6 4.1677 7.5347 -5.1006 13 7 4.5552 8.6308 -4.4858 14 14 4.1370 7.4719 -6.9673 15 1 2.8075 7.9177 -7.4558 16 1 5.1897 8.3677 -7.5100 17 1 4.3896 6.0803 -7.4200 18 6 2.7424 3.4132 0.8776 19 6 2.2850 2.1361 1.1030 20 35 2.0388 1.4387 2.8434 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.1092 4.4787 -2.9248 27 1 3.1457 7.2726 -2.5132 28 1 4.8259 6.6850 -2.5217 29 1 4.8241 9.4069 -5.0016 30 1 2.9925 4.1030 1.6701 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351588452.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:12 Heat of formation + Delta-G solvation = -41.231441 kcal Electronic energy + Delta-G solvation = -15717.262393 eV Core-core repulsion = 12876.947795 eV Total energy + Delta-G solvation = -2840.314597 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.77844 -39.19229 -36.26288 -34.85495 -34.40589 -32.14478 -30.25815 -28.85567 -26.39287 -24.55984 -23.37739 -22.16842 -20.57235 -19.27167 -18.26099 -17.48785 -16.86669 -16.47879 -16.38097 -15.67352 -15.24484 -15.05862 -14.62011 -14.20027 -14.07552 -13.96525 -13.50713 -13.06609 -12.92939 -12.71908 -12.59571 -12.24222 -12.21776 -11.93450 -11.66611 -11.52134 -11.25942 -11.16768 -10.83725 -10.10464 -9.79883 -9.53573 -8.30593 -6.48015 -0.72422 0.01708 0.37372 0.95493 1.10741 1.44127 1.46612 1.57858 2.06549 2.22656 2.45444 3.04729 3.50544 3.80146 3.91137 4.31938 4.34671 4.39255 4.67921 4.75786 4.91483 5.03998 5.07326 5.14442 5.18003 5.34938 5.36754 5.57941 5.79264 6.58057 6.69733 7.13410 7.28825 8.81680 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.030831 B = 0.003226 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.954465 B = 8677.993011 C = 9485.400101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.064 4.064 3 C -0.156 4.156 4 S 0.303 5.697 5 C -0.289 4.289 6 C 0.572 3.428 7 O -0.588 6.588 8 N -0.699 5.699 9 C 0.266 3.734 10 C -0.560 4.560 11 H 0.085 0.915 12 C 0.007 3.993 13 N -0.929 5.929 14 Si 0.985 3.015 15 H -0.270 1.270 16 H -0.284 1.284 17 H -0.254 1.254 18 C -0.038 4.038 19 C -0.139 4.139 20 Br -0.012 7.012 21 H 0.053 0.947 22 H 0.058 0.942 23 H 0.086 0.914 24 H 0.102 0.898 25 H 0.098 0.902 26 H 0.404 0.596 27 H -0.006 1.006 28 H -0.006 1.006 29 H 0.270 0.730 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.697 -23.427 9.850 26.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 C -0.279 4.279 4 S 0.571 5.429 5 C -0.410 4.410 6 C 0.359 3.641 7 O -0.471 6.471 8 N -0.348 5.348 9 C 0.144 3.856 10 C -0.597 4.597 11 H 0.103 0.897 12 C -0.193 4.193 13 N -0.568 5.568 14 Si 0.808 3.192 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.177 1.177 18 C -0.072 4.072 19 C -0.230 4.230 20 Br 0.072 6.928 21 H 0.072 0.928 22 H 0.077 0.923 23 H 0.105 0.895 24 H 0.121 0.879 25 H 0.116 0.884 26 H 0.240 0.760 27 H 0.012 0.988 28 H 0.012 0.988 29 H 0.079 0.921 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.580 -23.129 9.386 26.394 hybrid contribution 0.388 1.102 0.483 1.264 sum -8.192 -22.027 9.869 25.489 Atomic orbital electron populations 1.21799 0.92592 1.03719 1.02415 1.20513 0.97532 0.86605 1.05623 1.24759 1.03074 1.03569 0.96484 1.82894 1.56718 0.98724 1.04568 1.24410 1.17711 1.00040 0.98868 1.17470 0.77709 0.86240 0.82658 1.90763 1.52245 1.44918 1.59154 1.46095 1.65660 1.17606 1.05458 1.18679 0.92976 0.80013 0.93970 1.21579 1.47013 1.00804 0.90323 0.89705 1.26055 0.93695 0.94326 1.05246 1.70130 1.44043 1.04101 1.38490 0.85146 0.78069 0.78966 0.77001 1.19505 1.20928 1.17747 1.20559 0.95941 0.95268 0.95407 1.20368 1.13174 0.96078 0.93415 1.96650 1.96402 1.84898 1.14848 0.92822 0.92250 0.89469 0.87917 0.88373 0.76045 0.98788 0.98754 0.92124 0.83349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.90 71.98 0.71 -0.95 16 2 C -0.06 -0.81 6.01 29.85 0.18 -0.63 16 3 C -0.16 -3.07 5.53 24.69 0.14 -2.93 16 4 S 0.30 6.72 22.10 -56.49 -1.25 5.47 16 5 C -0.29 -9.45 6.45 24.08 0.16 -9.29 16 6 C 0.57 24.93 7.78 86.42 0.67 25.60 16 7 O -0.59 -30.81 16.84 -4.36 -0.07 -30.88 16 8 N -0.70 -30.95 5.54 -470.90 -2.61 -33.56 16 9 C 0.27 14.73 5.43 85.63 0.46 15.20 16 10 C -0.56 -30.32 9.28 25.60 0.24 -30.08 16 11 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 12 C 0.01 0.37 5.46 84.66 0.46 0.83 16 13 N -0.93 -55.70 13.29 21.45 0.28 -55.41 16 14 Si 0.99 41.70 29.54 68.60 2.03 43.73 16 15 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 16 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 18 C -0.04 -1.12 9.86 21.73 0.21 -0.91 16 19 C -0.14 -3.26 6.15 21.10 0.13 -3.13 16 20 Br -0.01 -0.23 32.62 -20.37 -0.66 -0.89 16 21 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 22 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 23 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.10 1.17 7.24 -2.39 -0.02 1.16 16 26 H 0.40 14.92 7.43 -92.71 -0.69 14.23 16 27 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 28 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 29 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 30 H 0.15 4.64 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -69.57 300.58 1.56 -68.01 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.48 Total: 9.84 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 3.36 Total: -6.30 kcal Atomic # 7 Polarization: -86.65 SS G_CDS: -2.33 Total: -88.97 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -0.07 Total: -30.88 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 16 Polarization: 6.72 SS G_CDS: -1.25 Total: 5.47 kcal Atomic # 35 Polarization: -0.23 SS G_CDS: -0.66 Total: -0.89 kcal Total: -69.57 1.56 -68.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351588452.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.778 kcal (2) G-P(sol) polarization free energy of solvation -69.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds