Wall clock time and date at job start Tue Mar 31 2020 11:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86800 * 119.99806 * 2 1 4 4 H 1.48498 * 109.47371 * 269.99730 * 3 2 1 5 5 H 1.48500 * 109.47258 * 30.00457 * 3 2 1 6 6 H 1.48506 * 109.46855 * 149.99967 * 3 2 1 7 7 C 1.38796 * 120.00221 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00308 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99511 * 0.02562 * 7 2 1 10 10 C 1.81009 * 99.99820 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47149 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00163 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00086 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00144 * 179.97438 * 13 11 10 15 15 H 1.08996 * 110.37256 * 327.18327 * 14 13 11 16 16 C 1.54141 * 110.32861 * 204.99282 * 14 13 11 17 17 C 1.54217 * 101.72366 * 214.51144 * 16 14 13 18 18 C 1.52120 * 104.84034 * 26.47675 * 17 16 14 19 19 S 1.76529 * 139.37111 * 162.61544 * 18 17 16 20 20 C 1.75581 * 91.09686 * 180.02562 * 19 18 17 21 21 Cl 1.73591 * 125.18295 * 179.97438 * 20 19 18 22 22 C 1.32748 * 109.63511 * 359.97403 * 20 19 18 23 23 C 1.33782 * 110.67706 * 342.60700 * 18 17 16 24 24 H 0.97000 * 119.99728 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46722 * 59.99756 * 10 9 7 26 26 H 1.08994 * 109.47024 * 300.00405 * 10 9 7 27 27 H 0.97008 * 120.00133 * 359.97438 * 13 11 10 28 28 H 1.09003 * 110.97545 * 96.40334 * 16 14 13 29 29 H 1.09008 * 110.97782 * 332.62362 * 16 14 13 30 30 H 1.09004 * 110.36193 * 145.31454 * 17 16 14 31 31 H 1.08998 * 110.36617 * 267.52197 * 17 16 14 32 32 H 1.08002 * 122.19730 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7279 -0.0019 10 6 2.5158 -3.8914 -0.0029 11 6 1.9874 -5.3027 -0.0048 12 8 0.7911 -5.5023 -0.0050 13 7 2.8441 -6.3431 -0.0054 14 6 2.3304 -7.7150 -0.0066 15 1 1.3929 -7.7697 0.5467 16 6 3.3692 -8.6764 0.6037 17 6 3.1432 -9.9531 -0.2313 18 6 2.5857 -9.4579 -1.5572 19 16 2.3538 -10.0307 -3.2108 20 6 1.6307 -8.4997 -3.6756 21 17 1.0442 -8.1116 -5.2627 22 6 1.6008 -7.6843 -2.6286 23 6 2.1301 -8.2055 -1.4398 24 1 -0.4850 0.8401 -0.0004 25 1 3.1245 -3.7321 0.8872 26 1 3.1245 -3.7305 -0.8927 27 1 3.8010 -6.1835 -0.0049 28 1 3.1609 -8.8578 1.6581 29 1 4.3813 -8.2950 0.4674 30 1 4.0868 -10.4757 -0.3881 31 1 2.4255 -10.6077 0.2632 32 1 1.1952 -6.6852 -2.6886 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358191383.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:49 Heat of formation + Delta-G solvation = -26.976893 kcal Electronic energy + Delta-G solvation = -18717.647505 eV Core-core repulsion = 15535.131588 eV Total energy + Delta-G solvation = -3182.515917 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 317.005 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.31665 -39.72509 -37.98488 -35.93607 -34.59414 -34.37245 -31.10184 -28.73692 -27.90726 -27.42660 -23.75812 -22.33196 -21.89260 -19.96514 -19.68734 -18.70186 -17.88109 -17.15174 -16.88215 -16.71637 -16.13172 -16.06141 -15.54663 -14.92417 -14.59842 -14.55472 -14.23467 -14.15470 -13.57414 -13.18019 -13.17043 -13.06619 -12.89921 -12.69123 -12.61463 -12.49678 -12.37782 -11.79520 -11.73885 -11.67090 -11.14781 -10.95016 -10.27735 -10.19476 -9.58544 -9.38365 -8.66767 -8.35063 -6.13025 -0.25716 -0.04287 0.72091 1.10020 1.24365 1.37635 1.41981 1.49220 1.58972 1.63341 2.26569 2.35891 2.99179 3.31388 3.41773 3.53247 3.93216 4.12360 4.18858 4.29702 4.31063 4.47031 4.50850 4.68202 4.69034 4.87612 5.02665 5.11824 5.17040 5.25589 5.41329 5.51729 6.19326 6.51283 7.06309 7.25960 8.74138 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.017834 B = 0.003161 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.616811 B = 8856.011812 C = 9967.733083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.257 1.257 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.130 4.130 11 C 0.535 3.465 12 O -0.561 6.561 13 N -0.705 5.705 14 C 0.202 3.798 15 H 0.084 0.916 16 C -0.108 4.108 17 C -0.037 4.037 18 C -0.182 4.182 19 S 0.211 5.789 20 C -0.172 4.172 21 Cl -0.017 7.017 22 C -0.103 4.103 23 C -0.154 4.154 24 H 0.271 0.729 25 H 0.112 0.888 26 H 0.105 0.895 27 H 0.418 0.582 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.346 -24.233 -2.457 27.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.180 1.180 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.281 4.281 11 C 0.321 3.679 12 O -0.439 6.439 13 N -0.358 5.358 14 C 0.095 3.905 15 H 0.102 0.898 16 C -0.147 4.147 17 C -0.077 4.077 18 C -0.300 4.300 19 S 0.475 5.525 20 C -0.315 4.315 21 Cl 0.012 6.988 22 C -0.135 4.135 23 C -0.167 4.167 24 H 0.080 0.920 25 H 0.130 0.870 26 H 0.123 0.877 27 H 0.255 0.745 28 H 0.132 0.868 29 H 0.122 0.878 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 10.463 -25.798 -3.422 28.049 hybrid contribution 0.969 3.186 0.051 3.330 sum 11.432 -22.613 -3.371 25.561 Atomic orbital electron populations 1.70186 1.07992 1.28590 1.48037 1.26122 0.95946 1.03309 0.93722 0.84963 0.78280 0.76044 0.78758 1.19433 1.20264 1.18047 1.23211 0.95346 0.92059 1.58853 0.89933 1.85581 1.10550 0.99210 1.97042 1.23378 1.03540 0.94528 1.06670 1.20073 0.86348 0.86689 0.74798 1.90699 1.17362 1.86014 1.49836 1.45841 1.10240 1.04506 1.75210 1.20713 0.99476 0.80877 0.89445 0.89760 1.22692 0.98787 0.92259 1.00942 1.21021 1.02724 0.97877 0.86041 1.26412 1.05304 0.98487 0.99840 1.83819 1.58494 1.09643 1.00516 1.24915 1.13036 1.01676 0.91829 1.98363 1.86801 1.93556 1.20093 1.19691 1.01320 1.00706 0.91795 1.20695 1.03350 0.96223 0.96391 0.92013 0.86956 0.87709 0.74467 0.86822 0.87790 0.87134 0.87500 0.86827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.42 13.22 21.65 0.29 -56.13 16 2 C 0.01 0.79 5.49 84.86 0.47 1.25 16 3 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 7 C -0.55 -31.40 9.50 67.95 0.65 -30.75 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.43 20.57 -56.49 -1.16 -9.59 16 10 C -0.13 -5.13 6.16 71.23 0.44 -4.69 16 11 C 0.54 19.48 7.85 87.66 0.69 20.16 16 12 O -0.56 -25.86 15.51 -3.02 -0.05 -25.91 16 13 N -0.70 -17.07 5.13 -441.04 -2.26 -19.33 16 14 C 0.20 4.30 3.24 45.31 0.15 4.45 16 15 H 0.08 2.21 7.56 -2.39 -0.02 2.19 16 16 C -0.11 -1.07 6.79 31.39 0.21 -0.85 16 17 C -0.04 -0.33 6.80 30.72 0.21 -0.12 16 18 C -0.18 -3.15 7.35 25.13 0.18 -2.97 16 19 S 0.21 3.77 23.34 -56.49 -1.32 2.45 16 20 C -0.17 -4.32 7.05 66.64 0.47 -3.85 16 21 Cl -0.02 -0.41 29.28 -2.72 -0.08 -0.49 16 22 C -0.10 -2.98 10.12 21.56 0.22 -2.76 16 23 C -0.15 -3.67 6.18 -19.73 -0.12 -3.79 16 24 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 25 H 0.11 3.92 8.14 -2.39 -0.02 3.91 16 26 H 0.10 3.80 8.14 -2.40 -0.02 3.78 16 27 H 0.42 7.07 8.42 -92.70 -0.78 6.29 16 28 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.10 0.69 7.83 -2.38 -0.02 0.67 16 30 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.11 4.03 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -78.29 323.16 1.39 -76.90 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 0.39 Total: 10.23 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: 3.56 Total: -23.93 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -1.98 Total: -75.47 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.05 Total: -25.91 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -4.66 SS G_CDS: -2.48 Total: -7.14 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -0.08 Total: -0.49 kcal Total: -78.29 1.39 -76.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358191383.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.921 kcal (2) G-P(sol) polarization free energy of solvation -78.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds