Wall clock time and date at job start Tue Mar 31 2020 11:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48501 * 109.46950 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47074 * 300.00488 * 3 2 1 6 6 H 1.48505 * 109.46997 * 60.00482 * 3 2 1 7 7 C 1.37873 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99888 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47041 * 179.97438 * 11 10 9 13 13 C 1.38248 * 120.00100 * 104.99723 * 12 11 10 14 14 C 1.38212 * 120.00509 * 179.97438 * 13 12 11 15 15 C 1.38261 * 120.01325 * 0.02562 * 14 13 12 16 16 C 1.38198 * 120.00807 * 359.97438 * 15 14 13 17 17 C 1.38268 * 120.00626 * 284.72400 * 12 11 10 18 18 I 2.09501 * 120.00326 * 0.02562 * 17 12 11 19 19 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47103 * 60.00168 * 9 7 2 21 21 H 1.09000 * 109.47247 * 300.00046 * 9 7 2 22 22 H 1.00901 * 111.00013 * 303.95472 * 10 9 7 23 23 H 1.08997 * 109.47334 * 299.99788 * 11 10 9 24 24 H 1.08995 * 109.47296 * 60.00089 * 11 10 9 25 25 H 1.07999 * 119.99473 * 0.02562 * 13 12 11 26 26 H 1.08000 * 119.99437 * 179.97438 * 14 13 12 27 27 H 1.08008 * 119.99838 * 179.97438 * 15 14 13 28 28 H 1.07997 * 120.00391 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 1.5055 -4.9070 0.0001 12 6 2.5151 -6.0259 -0.0006 13 6 2.7490 -6.7466 1.1558 14 6 3.6744 -7.7731 1.1551 15 6 4.3669 -8.0792 -0.0017 16 6 4.1335 -7.3592 -1.1580 17 6 3.2034 -6.3355 -1.1591 18 53 2.8436 -5.2487 -2.9136 19 1 -0.4850 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8897 22 1 2.8407 -3.5486 -0.7819 23 1 0.8810 -4.9812 0.8903 24 1 0.8804 -4.9817 -0.8896 25 1 2.2078 -6.5079 2.0595 26 1 3.8573 -8.3358 2.0587 27 1 5.0904 -8.8812 -0.0019 28 1 4.6742 -7.5986 -2.0617 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379374396.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:36 Heat of formation + Delta-G solvation = 34.400923 kcal Electronic energy + Delta-G solvation = -12575.569255 eV Core-core repulsion = 10257.330984 eV Total energy + Delta-G solvation = -2318.238271 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 316.997 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.48389 -35.44728 -32.82510 -32.03390 -30.93257 -27.94511 -26.89463 -24.25751 -22.21407 -21.48439 -20.71892 -16.80192 -16.09705 -15.48791 -14.90846 -14.56171 -14.28042 -13.58273 -13.29596 -12.86748 -12.56331 -12.24263 -11.57157 -11.32915 -11.01718 -10.81609 -10.70486 -10.58214 -10.21241 -9.94690 -9.53094 -9.17144 -8.83146 -8.61423 -8.45062 -7.29896 -6.00818 -4.02168 1.18171 1.31064 1.36224 3.32861 3.39948 3.45649 3.68769 4.45900 4.81570 4.89243 4.97573 5.32431 5.35339 5.41266 5.57391 5.67477 5.87885 5.97819 6.18443 6.25717 6.41039 6.61629 6.88285 7.24053 7.44627 7.79727 8.13034 8.38336 8.60456 9.06641 9.62355 11.10363 Molecular weight = 317.00amu Principal moments of inertia in cm(-1) A = 0.021159 B = 0.005801 C = 0.004921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.003474 B = 4825.963361 C = 5688.463908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.683 5.683 11 C 0.080 3.920 12 C -0.032 4.032 13 C -0.103 4.103 14 C -0.103 4.103 15 C -0.128 4.128 16 C -0.087 4.087 17 C -0.100 4.100 18 I -0.041 7.041 19 H 0.260 0.740 20 H -0.010 1.010 21 H 0.028 0.972 22 H 0.332 0.668 23 H 0.079 0.921 24 H 0.040 0.960 25 H 0.131 0.869 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.776 -17.664 -4.733 19.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.315 5.315 11 C -0.050 4.050 12 C -0.036 4.036 13 C -0.123 4.123 14 C -0.122 4.122 15 C -0.148 4.148 16 C -0.108 4.108 17 C -0.241 4.241 18 I 0.109 6.891 19 H 0.070 0.930 20 H 0.008 0.992 21 H 0.046 0.954 22 H 0.151 0.849 23 H 0.097 0.903 24 H 0.058 0.942 25 H 0.149 0.851 26 H 0.143 0.857 27 H 0.143 0.857 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.439 -16.745 -5.287 18.703 hybrid contribution 0.274 0.288 0.148 0.424 sum 6.714 -16.457 -5.138 18.502 Atomic orbital electron populations 1.69973 1.06026 1.26621 1.51101 1.24968 0.94867 0.99274 0.95396 0.86454 0.80156 0.83415 0.77491 1.19610 1.21090 1.21000 1.21187 0.93531 0.90113 1.50065 0.91978 1.19574 0.90563 0.87095 0.95930 1.60843 1.21032 1.00173 1.49456 1.21096 0.93473 0.88938 1.01483 1.20017 0.95992 0.95685 0.91871 1.21115 0.98429 0.95290 0.97485 1.21251 0.95748 0.97050 0.98119 1.21096 1.00576 1.00351 0.92792 1.21009 0.96484 0.94481 0.98785 1.24283 1.02468 1.00840 0.96485 1.96824 1.96145 1.71968 1.24155 0.93002 0.99210 0.95376 0.84943 0.90306 0.94236 0.85131 0.85675 0.85660 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.29 55.43 0.74 -26.26 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 15 3 Si 0.90 21.99 29.54 -169.99 -5.02 16.96 15 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 5 H -0.28 -6.89 7.11 56.52 0.40 -6.48 15 6 H -0.28 -6.88 7.11 56.52 0.40 -6.47 15 7 C -0.51 -14.72 9.32 -34.44 -0.32 -15.04 15 8 H 0.06 1.78 7.81 -52.48 -0.41 1.37 15 9 C 0.19 5.19 5.44 -4.97 -0.03 5.17 15 10 N -0.68 -15.27 6.48 -116.34 -0.75 -16.02 15 11 C 0.08 1.48 5.13 -4.97 -0.03 1.45 15 12 C -0.03 -0.51 5.42 -104.61 -0.57 -1.08 15 13 C -0.10 -1.39 9.67 -39.59 -0.38 -1.77 15 14 C -0.10 -1.15 10.05 -39.58 -0.40 -1.55 15 15 C -0.13 -1.38 10.05 -39.59 -0.40 -1.78 15 16 C -0.09 -1.07 9.76 -39.57 -0.39 -1.46 15 17 C -0.10 -1.48 6.12 -39.54 -0.24 -1.72 15 18 I -0.04 -0.62 36.69 -73.02 -2.68 -3.30 15 19 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 20 H -0.01 -0.28 8.14 -51.93 -0.42 -0.70 15 21 H 0.03 0.80 8.14 -51.93 -0.42 0.37 15 22 H 0.33 7.28 6.67 -39.29 -0.26 7.01 15 23 H 0.08 1.41 7.95 -51.93 -0.41 1.00 15 24 H 0.04 0.74 7.16 -51.93 -0.37 0.37 15 25 H 0.13 1.60 8.00 -52.49 -0.42 1.18 15 26 H 0.13 1.04 8.06 -52.49 -0.42 0.62 15 27 H 0.13 0.99 8.06 -52.48 -0.42 0.57 15 28 H 0.13 1.31 8.06 -52.49 -0.42 0.89 15 LS Contribution 270.09 15.07 4.07 4.07 Total: -1.00 -30.56 270.09 -9.62 -40.18 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -3.13 Total: 0.62 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -2.84 Total: -16.26 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: -0.02 Total: -42.28 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 53 Polarization: -0.62 SS G_CDS: -2.68 Total: -3.30 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.56 -9.62 -40.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379374396.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.581 kcal (2) G-P(sol) polarization free energy of solvation -30.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds