Wall clock time and date at job start Tue Mar 31 2020 11:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76196 * 102.99995 * 2 1 4 4 C 1.38834 * 120.05051 * 359.72028 * 3 2 1 5 5 C 1.38710 * 119.86357 * 179.81536 * 4 3 2 6 6 N 1.39977 * 120.01832 * 180.18752 * 5 4 3 7 7 C 1.34777 * 119.99774 * 213.60681 * 6 5 4 8 8 O 1.21290 * 119.99986 * 5.27588 * 7 6 5 9 9 C 1.50699 * 120.00069 * 185.27239 * 7 6 5 10 10 S 1.80995 * 109.47465 * 179.97438 * 9 7 6 11 11 C 1.76203 * 100.00101 * 180.02562 * 10 9 7 12 12 H 1.07993 * 119.99601 * 0.02562 * 11 10 9 13 13 C 1.38806 * 119.99765 * 180.02562 * 11 10 9 14 14 N 1.31630 * 119.99874 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99787 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47348 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47035 * 119.99800 * 15 13 11 18 18 H 1.48505 * 109.47080 * 239.99933 * 15 13 11 19 19 C 1.38932 * 119.96338 * 0.46266 * 5 4 3 20 20 C 1.38184 * 120.09083 * 359.76922 * 19 5 4 21 21 C 1.38224 * 120.13996 * 359.97438 * 20 19 5 22 22 Cl 1.73598 * 119.98190 * 179.97438 * 21 20 19 23 23 H 1.08993 * 109.47439 * 300.00359 * 1 2 3 24 24 H 1.08999 * 109.47068 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47041 * 60.00282 * 1 2 3 26 26 H 1.08000 * 120.06409 * 359.97438 * 4 3 2 27 27 H 0.96994 * 120.00064 * 33.60478 * 6 5 4 28 28 H 1.09000 * 109.47133 * 300.00773 * 9 7 6 29 29 H 1.09004 * 109.46653 * 59.99986 * 9 7 6 30 30 H 0.97003 * 119.99729 * 180.02562 * 14 13 11 31 31 H 1.08002 * 119.95882 * 179.74480 * 19 5 4 32 32 H 1.08007 * 119.93232 * 179.97438 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1958 2.6645 -0.0059 5 6 1.5123 4.0151 -0.0020 6 7 0.4920 4.9734 -0.0039 7 6 0.6687 6.1446 -0.6469 8 8 1.6715 6.3307 -1.3034 9 6 -0.3795 7.2229 -0.5504 10 16 0.1448 8.6622 -1.5144 11 6 -1.2242 9.7349 -1.2320 12 1 -2.0469 9.4089 -0.6129 13 6 -1.2453 10.9989 -1.8053 14 7 -0.2424 11.3963 -2.5595 15 14 -2.6964 12.1363 -1.5054 16 1 -3.6845 11.4576 -0.6290 17 1 -2.2225 13.3802 -0.8473 18 1 -3.3361 12.4751 -2.8021 19 6 2.8424 4.4161 -0.0019 20 6 3.8509 3.4714 -0.0010 21 6 3.5401 2.1245 0.0005 22 17 4.8103 0.9412 0.0011 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 0.1624 2.3508 -0.0109 27 1 -0.3423 4.7945 0.4575 28 1 -1.3246 6.8471 -0.9426 29 1 -0.5084 7.5119 0.4927 30 1 -0.2569 12.2797 -2.9598 31 1 3.0887 5.4677 -0.0031 32 1 4.8841 3.7860 -0.0013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413940766.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:16 Heat of formation + Delta-G solvation = -17.859109 kcal Electronic energy + Delta-G solvation = -18345.418115 eV Core-core repulsion = 15163.297575 eV Total energy + Delta-G solvation = -3182.120540 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 317.005 amu Computer time = -1.22 seconds Orbital eigenvalues (eV) -40.50512 -38.54545 -36.62849 -34.62407 -32.51401 -31.70398 -30.61453 -29.26386 -28.26304 -25.57657 -23.61806 -22.75011 -20.66632 -18.55728 -17.94191 -16.92382 -16.69284 -16.22238 -15.77185 -14.89765 -14.87593 -14.49377 -14.37253 -14.32818 -14.06098 -13.59477 -13.48268 -12.94793 -12.78018 -12.58922 -12.40767 -11.90282 -11.67495 -11.23222 -11.13181 -11.11209 -10.84503 -10.60407 -10.41002 -9.92824 -9.88430 -9.56018 -9.15479 -8.40348 -8.36796 -7.65130 -6.61609 -6.30357 -4.02381 0.84275 0.93486 1.13847 1.89493 2.11786 2.70575 2.78973 3.16332 3.20996 3.25908 3.42152 3.49250 4.11207 4.44102 4.68377 4.69981 4.80114 4.94905 5.02151 5.05427 5.20386 5.28901 5.40003 5.48911 5.55564 5.68918 5.94044 5.96708 6.05292 6.20616 6.69624 7.29810 7.51790 8.22212 8.26844 9.15328 10.77083 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.030519 B = 0.002516 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.241506 B =11125.677552 C =11886.744953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 S -0.087 6.087 3 C -0.062 4.062 4 C -0.158 4.158 5 C 0.187 3.813 6 N -0.681 5.681 7 C 0.532 3.468 8 O -0.491 6.491 9 C -0.155 4.155 10 S -0.056 6.056 11 C -0.537 4.537 12 H 0.074 0.926 13 C 0.074 3.926 14 N -0.866 5.866 15 Si 0.920 3.080 16 H -0.271 1.271 17 H -0.279 1.279 18 H -0.279 1.279 19 C -0.115 4.115 20 C -0.069 4.069 21 C -0.043 4.043 22 Cl -0.060 7.060 23 H 0.085 0.915 24 H 0.109 0.891 25 H 0.086 0.914 26 H 0.135 0.865 27 H 0.411 0.589 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.269 0.731 31 H 0.151 0.849 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.224 -22.041 8.023 23.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 S 0.156 5.844 3 C -0.176 4.176 4 C -0.185 4.185 5 C 0.089 3.911 6 N -0.328 5.328 7 C 0.320 3.680 8 O -0.362 6.362 9 C -0.305 4.305 10 S 0.171 5.829 11 C -0.685 4.685 12 H 0.092 0.908 13 C -0.136 4.136 14 N -0.501 5.501 15 Si 0.746 3.254 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.138 4.138 20 C -0.090 4.090 21 C -0.077 4.077 22 Cl -0.031 7.031 23 H 0.104 0.896 24 H 0.128 0.872 25 H 0.104 0.896 26 H 0.152 0.848 27 H 0.247 0.753 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.168 0.832 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.674 -22.676 6.809 24.133 hybrid contribution -3.312 1.488 1.110 3.797 sum 1.362 -21.188 7.919 22.660 Atomic orbital electron populations 1.23777 0.95517 1.07232 1.05855 1.85722 1.05562 1.01164 1.91996 1.21321 0.94105 0.97559 1.04659 1.20773 0.98596 0.91003 1.08084 1.17675 0.88849 0.87806 0.96725 1.43777 1.17856 1.16258 1.54879 1.20607 0.88206 0.81658 0.77537 1.90737 1.29245 1.78665 1.37582 1.23555 1.00089 1.00110 1.06746 1.85443 1.29522 1.05399 1.62564 1.22883 1.06609 1.02086 1.36950 0.90758 1.25005 0.96976 0.97171 0.94415 1.70018 1.30184 1.19726 1.30205 0.86093 0.81094 0.79943 0.78231 1.19595 1.20496 1.20513 1.21275 0.90404 1.01360 1.00764 1.20907 1.00501 0.89672 0.97889 1.20300 0.87475 0.90449 1.09467 1.98360 1.50419 1.57345 1.96938 0.89631 0.87245 0.89551 0.84754 0.75266 0.88762 0.88586 0.92116 0.83180 0.84018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 9.15 101.05 0.92 -0.02 16 2 S -0.09 -0.83 21.46 -107.50 -2.31 -3.13 16 3 C -0.06 -0.70 6.11 -39.05 -0.24 -0.94 16 4 C -0.16 -1.70 9.28 -39.19 -0.36 -2.07 16 5 C 0.19 2.38 6.28 -83.71 -0.53 1.85 16 6 N -0.68 -8.49 5.34 -9.87 -0.05 -8.54 16 7 C 0.53 9.05 7.58 -10.99 -0.08 8.97 16 8 O -0.49 -10.15 13.55 5.55 0.08 -10.08 16 9 C -0.15 -2.84 6.16 36.01 0.22 -2.62 16 10 S -0.06 -1.43 20.57 -107.50 -2.21 -3.65 16 11 C -0.54 -14.71 9.50 30.94 0.29 -14.41 16 12 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 13 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 14 N -0.87 -25.43 13.22 55.49 0.73 -24.70 16 15 Si 0.92 20.80 29.55 -169.99 -5.02 15.77 16 16 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 C -0.12 -1.56 8.65 -39.34 -0.34 -1.90 16 20 C -0.07 -0.82 9.81 -39.61 -0.39 -1.21 16 21 C -0.04 -0.52 6.34 -39.27 -0.25 -0.76 16 22 Cl -0.06 -0.66 27.82 -51.86 -1.44 -2.10 16 23 H 0.08 0.45 7.76 -51.93 -0.40 0.04 16 24 H 0.11 0.49 8.14 -51.92 -0.42 0.07 16 25 H 0.09 0.51 7.73 -51.92 -0.40 0.11 16 26 H 0.13 1.11 5.88 -52.49 -0.31 0.80 16 27 H 0.41 3.63 8.82 -40.82 -0.36 3.27 16 28 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 29 H 0.10 1.61 8.14 -51.91 -0.42 1.18 16 30 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.15 2.26 6.41 -52.49 -0.34 1.93 16 32 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 322.39 15.07 4.86 4.86 Total: -1.00 -32.61 322.39 -9.26 -41.87 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -3.04 Total: 0.87 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -0.84 Total: -11.17 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.68 Total: -33.24 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: -2.26 SS G_CDS: -4.52 Total: -6.78 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.44 Total: -2.10 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.61 -9.26 -41.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413940766.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.009 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.22 seconds