Wall clock time and date at job start Tue Mar 31 2020 11:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76196 * 102.99995 * 2 1 4 4 C 1.38834 * 120.05051 * 359.72028 * 3 2 1 5 5 C 1.38710 * 119.86357 * 179.81536 * 4 3 2 6 6 N 1.39977 * 120.01832 * 180.18752 * 5 4 3 7 7 C 1.34777 * 119.99774 * 213.60681 * 6 5 4 8 8 O 1.21290 * 119.99986 * 5.27588 * 7 6 5 9 9 C 1.50699 * 120.00069 * 185.27239 * 7 6 5 10 10 S 1.80995 * 109.47465 * 179.97438 * 9 7 6 11 11 C 1.76203 * 100.00101 * 180.02562 * 10 9 7 12 12 H 1.07993 * 119.99601 * 0.02562 * 11 10 9 13 13 C 1.38806 * 119.99765 * 180.02562 * 11 10 9 14 14 N 1.31630 * 119.99874 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99787 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47348 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47035 * 119.99800 * 15 13 11 18 18 H 1.48505 * 109.47080 * 239.99933 * 15 13 11 19 19 C 1.38932 * 119.96338 * 0.46266 * 5 4 3 20 20 C 1.38184 * 120.09083 * 359.76922 * 19 5 4 21 21 C 1.38224 * 120.13996 * 359.97438 * 20 19 5 22 22 Cl 1.73598 * 119.98190 * 179.97438 * 21 20 19 23 23 H 1.08993 * 109.47439 * 300.00359 * 1 2 3 24 24 H 1.08999 * 109.47068 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47041 * 60.00282 * 1 2 3 26 26 H 1.08000 * 120.06409 * 359.97438 * 4 3 2 27 27 H 0.96994 * 120.00064 * 33.60478 * 6 5 4 28 28 H 1.09000 * 109.47133 * 300.00773 * 9 7 6 29 29 H 1.09004 * 109.46653 * 59.99986 * 9 7 6 30 30 H 0.97003 * 119.99729 * 180.02562 * 14 13 11 31 31 H 1.08002 * 119.95882 * 179.74480 * 19 5 4 32 32 H 1.08007 * 119.93232 * 179.97438 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1958 2.6645 -0.0059 5 6 1.5123 4.0151 -0.0020 6 7 0.4920 4.9734 -0.0039 7 6 0.6687 6.1446 -0.6469 8 8 1.6715 6.3307 -1.3034 9 6 -0.3795 7.2229 -0.5504 10 16 0.1448 8.6622 -1.5144 11 6 -1.2242 9.7349 -1.2320 12 1 -2.0469 9.4089 -0.6129 13 6 -1.2453 10.9989 -1.8053 14 7 -0.2424 11.3963 -2.5595 15 14 -2.6964 12.1363 -1.5054 16 1 -3.6845 11.4576 -0.6290 17 1 -2.2225 13.3802 -0.8473 18 1 -3.3361 12.4751 -2.8021 19 6 2.8424 4.4161 -0.0019 20 6 3.8509 3.4714 -0.0010 21 6 3.5401 2.1245 0.0005 22 17 4.8103 0.9412 0.0011 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 0.1624 2.3508 -0.0109 27 1 -0.3423 4.7945 0.4575 28 1 -1.3246 6.8471 -0.9426 29 1 -0.5084 7.5119 0.4927 30 1 -0.2569 12.2797 -2.9598 31 1 3.0887 5.4677 -0.0031 32 1 4.8841 3.7860 -0.0013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413940766.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:14 Heat of formation + Delta-G solvation = -37.827545 kcal Electronic energy + Delta-G solvation = -18346.284011 eV Core-core repulsion = 15163.297575 eV Total energy + Delta-G solvation = -3182.986437 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 317.005 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.64479 -39.65307 -37.55689 -35.78352 -34.58736 -32.57787 -31.87692 -29.91363 -29.33868 -27.65965 -24.60138 -23.73547 -21.88073 -19.95684 -19.38514 -18.12843 -17.81101 -17.14552 -16.92783 -16.88027 -16.17424 -15.90518 -15.22881 -15.14057 -15.09844 -14.83595 -14.52007 -14.23109 -13.85676 -13.64882 -13.35257 -13.16484 -12.96728 -12.90739 -12.62744 -12.57025 -12.06434 -11.73401 -11.49566 -11.33920 -11.16198 -11.03203 -10.65792 -10.29201 -9.36744 -8.67599 -8.44430 -8.35564 -6.13382 -0.13594 0.02562 0.40401 1.06967 1.20343 1.39329 1.41550 1.42996 1.48645 1.57540 2.08505 2.25940 2.45752 2.99439 3.26050 3.59355 3.76133 4.00190 4.11191 4.23884 4.27398 4.28895 4.32326 4.47760 4.53600 4.60987 4.88682 4.99685 5.07408 5.19912 5.42622 5.66734 6.19700 6.25857 7.00202 7.06643 8.73667 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.030519 B = 0.002516 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.241506 B =11125.677552 C =11886.744953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S -0.106 6.106 3 C -0.067 4.067 4 C -0.145 4.145 5 C 0.172 3.828 6 N -0.656 5.656 7 C 0.537 3.463 8 O -0.535 6.535 9 C -0.129 4.129 10 S -0.147 6.147 11 C -0.544 4.544 12 H 0.085 0.915 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 0.998 3.002 16 H -0.255 1.255 17 H -0.276 1.276 18 H -0.276 1.276 19 C -0.135 4.135 20 C -0.071 4.071 21 C -0.052 4.052 22 Cl -0.054 7.054 23 H 0.099 0.901 24 H 0.129 0.871 25 H 0.092 0.908 26 H 0.165 0.835 27 H 0.431 0.569 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.271 0.729 31 H 0.128 0.872 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.167 -23.826 9.287 25.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 S 0.137 5.863 3 C -0.181 4.181 4 C -0.171 4.171 5 C 0.075 3.925 6 N -0.304 5.304 7 C 0.325 3.675 8 O -0.410 6.410 9 C -0.280 4.280 10 S 0.080 5.920 11 C -0.692 4.692 12 H 0.103 0.897 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.820 3.180 16 H -0.179 1.179 17 H -0.201 1.201 18 H -0.201 1.201 19 C -0.158 4.158 20 C -0.092 4.092 21 C -0.086 4.086 22 Cl -0.025 7.025 23 H 0.118 0.882 24 H 0.147 0.853 25 H 0.111 0.889 26 H 0.182 0.818 27 H 0.271 0.729 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.080 0.920 31 H 0.146 0.854 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.260 -24.520 8.109 25.925 hybrid contribution -2.533 1.809 0.770 3.207 sum -0.273 -22.710 8.879 24.386 Atomic orbital electron populations 1.23922 0.92121 1.08879 1.06832 1.85841 1.09319 0.99582 1.91564 1.21574 0.93959 0.98886 1.03715 1.20995 0.99991 0.89735 1.06427 1.17768 0.88351 0.88520 0.97910 1.43346 1.18665 1.14665 1.53735 1.20311 0.87127 0.82530 0.77543 1.90736 1.30773 1.79656 1.39858 1.23367 1.01121 0.97139 1.06412 1.85625 1.31236 1.09882 1.65220 1.23233 1.06717 1.02473 1.36785 0.89650 1.26113 1.00015 0.99057 0.93986 1.70182 1.32626 1.20325 1.31631 0.84914 0.77322 0.77424 0.78355 1.17884 1.20105 1.20104 1.21190 0.91600 1.00592 1.02381 1.20996 1.00833 0.89743 0.97622 1.20456 0.88226 0.90493 1.09407 1.98358 1.50230 1.56996 1.96889 0.88213 0.85306 0.88926 0.81761 0.72861 0.86376 0.86384 0.92017 0.85445 0.82956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.15 113.37 1.04 -0.21 16 2 S -0.11 -1.76 21.46 -56.49 -1.21 -2.98 16 3 C -0.07 -1.39 6.11 22.62 0.14 -1.26 16 4 C -0.14 -2.77 9.28 22.53 0.21 -2.56 16 5 C 0.17 4.14 6.28 38.12 0.24 4.38 16 6 N -0.66 -15.13 5.34 -303.54 -1.62 -16.75 16 7 C 0.54 17.96 7.58 87.66 0.66 18.63 16 8 O -0.54 -22.76 13.55 -3.06 -0.04 -22.80 16 9 C -0.13 -4.61 6.16 71.24 0.44 -4.17 16 10 S -0.15 -7.72 20.57 -56.49 -1.16 -8.89 16 11 C -0.54 -29.77 9.50 67.96 0.65 -29.13 16 12 H 0.09 4.30 7.80 -2.91 -0.02 4.28 16 13 C 0.01 0.72 5.49 84.86 0.47 1.19 16 14 N -0.91 -54.70 13.22 21.65 0.29 -54.41 16 15 Si 1.00 42.34 29.55 68.60 2.03 44.37 16 16 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 17 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 18 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 19 C -0.13 -3.70 8.65 22.42 0.19 -3.50 16 20 C -0.07 -1.71 9.81 22.25 0.22 -1.49 16 21 C -0.05 -1.20 6.34 22.47 0.14 -1.06 16 22 Cl -0.05 -1.14 27.82 -2.72 -0.08 -1.21 16 23 H 0.10 0.61 7.76 -2.39 -0.02 0.59 16 24 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.09 0.72 7.73 -2.39 -0.02 0.70 16 26 H 0.17 2.05 5.88 -2.91 -0.02 2.03 16 27 H 0.43 6.21 8.82 -92.71 -0.82 5.40 16 28 H 0.12 3.67 8.14 -2.39 -0.02 3.65 16 29 H 0.12 3.70 8.14 -2.39 -0.02 3.68 16 30 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 31 H 0.13 4.08 6.41 -2.91 -0.02 4.07 16 32 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -73.13 322.39 2.95 -70.18 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.36 Total: 11.69 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 4.39 Total: -19.19 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -1.33 Total: -71.16 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.04 Total: -22.80 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: -9.49 SS G_CDS: -2.37 Total: -11.86 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.21 kcal Total: -73.13 2.95 -70.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413940766.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.349 kcal (2) G-P(sol) polarization free energy of solvation -73.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds