Wall clock time and date at job start Tue Mar 31 2020 11:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33400 * 125.19312 * 2 1 4 4 C 1.38464 * 114.90913 * 180.24690 * 3 2 1 5 5 Br 1.89105 * 122.54488 * 179.72412 * 4 3 2 6 6 C 1.33434 * 114.90827 * 359.49031 * 4 3 2 7 7 C 1.50693 * 125.20401 * 180.17868 * 6 4 3 8 8 N 1.46897 * 109.47347 * 90.32178 * 7 6 4 9 9 C 1.46901 * 111.00026 * 66.04628 * 8 7 6 10 10 C 1.46905 * 111.00075 * 189.99834 * 8 7 6 11 11 H 1.08999 * 109.47055 * 55.00232 * 10 8 7 12 12 C 1.52998 * 109.47238 * 295.00161 * 10 8 7 13 13 C 1.50700 * 109.47184 * 174.99947 * 10 8 7 14 14 H 1.07999 * 119.99815 * 114.95248 * 13 10 8 15 15 C 1.37874 * 120.00008 * 294.95544 * 13 10 8 16 16 N 1.31517 * 120.00019 * 177.92528 * 15 13 10 17 17 Si 1.86802 * 120.00107 * 357.92028 * 15 13 10 18 18 H 1.48505 * 109.46680 * 85.00447 * 17 15 13 19 19 H 1.48492 * 109.47166 * 205.00348 * 17 15 13 20 20 H 1.48500 * 109.46926 * 325.00738 * 17 15 13 21 21 S 1.75873 * 125.19952 * 179.97438 * 2 1 3 22 22 H 1.09001 * 109.47174 * 90.00600 * 1 2 3 23 23 H 1.09000 * 109.47242 * 210.00289 * 1 2 3 24 24 H 1.08995 * 109.47646 * 330.00427 * 1 2 3 25 25 H 1.08000 * 122.54583 * 359.97398 * 3 2 1 26 26 H 1.09002 * 109.46874 * 210.32084 * 7 6 4 27 27 H 1.09006 * 109.47155 * 330.31999 * 7 6 4 28 28 H 1.09006 * 109.47098 * 60.00280 * 9 8 7 29 29 H 1.09001 * 109.47583 * 179.97438 * 9 8 7 30 30 H 1.09001 * 109.47212 * 300.00427 * 9 8 7 31 31 H 1.09001 * 109.47105 * 54.56699 * 12 10 8 32 32 H 1.08995 * 109.47352 * 174.57089 * 12 10 8 33 33 H 1.09000 * 109.47178 * 294.57263 * 12 10 8 34 34 H 0.97000 * 120.00124 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0902 0.0000 4 6 3.6382 0.8430 -0.0054 5 35 4.9238 2.2299 -0.0142 6 6 3.9752 -0.4481 0.0010 7 6 5.3860 -0.9778 0.0009 8 7 5.8446 -1.1496 1.3858 9 6 5.0770 -2.2000 2.0681 10 6 7.2847 -1.4359 1.4318 11 1 7.8280 -0.6524 0.9036 12 6 7.5581 -2.7851 0.7641 13 6 7.7418 -1.4840 2.8670 14 1 8.1074 -2.4095 3.2866 15 6 7.6930 -0.3464 3.6445 16 7 8.0534 -0.3976 4.9083 17 14 7.1154 1.2678 2.9027 18 1 5.6330 1.3367 2.9607 19 1 7.6939 2.4001 3.6697 20 1 7.5598 1.3497 1.4882 21 16 2.5208 -1.4371 0.0006 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3634 0.8900 0.5137 25 1 1.8667 2.0897 -0.0004 26 1 5.4132 -1.9388 -0.5127 27 1 6.0389 -0.2724 -0.5132 28 1 5.2031 -3.1443 1.5385 29 1 5.4372 -2.3068 3.0913 30 1 4.0214 -1.9286 2.0806 31 1 7.1412 -2.7832 -0.2430 32 1 8.6337 -2.9534 0.7118 33 1 7.0939 -3.5801 1.3478 34 1 8.0187 0.4026 5.4554 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453566463.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:23 Heat of formation + Delta-G solvation = 38.897534 kcal Electronic energy + Delta-G solvation = -17246.822960 eV Core-core repulsion = 14545.816110 eV Total energy + Delta-G solvation = -2701.006850 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.43849 -37.09711 -33.08356 -32.04468 -30.42209 -29.58411 -28.01383 -25.50188 -25.36698 -23.06469 -22.10527 -19.24557 -18.42749 -17.05968 -16.67830 -15.35174 -15.10233 -14.28986 -14.00415 -13.97004 -13.44320 -13.14711 -12.95195 -12.58573 -12.47758 -12.33178 -12.01243 -11.58101 -11.40022 -11.16566 -10.91208 -10.74023 -10.59943 -10.51935 -10.12412 -9.96333 -9.77650 -9.48033 -9.10412 -8.50554 -8.41731 -8.16109 -7.26731 -5.98675 -4.06689 0.94447 1.32210 1.78499 2.47739 2.56108 3.60100 3.65894 3.79543 4.68151 4.72729 4.89522 5.05567 5.16344 5.35997 5.37620 5.52784 5.69047 5.71307 5.97446 6.03816 6.10046 6.14642 6.25095 6.27018 6.33027 6.37482 6.51331 6.80164 6.99368 7.21804 7.65595 7.99717 8.19361 8.59185 9.00090 9.65619 11.09662 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.015629 B = 0.007548 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.086029 B = 3708.495600 C = 4630.054935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.190 4.190 3 C -0.116 4.116 4 C -0.100 4.100 5 Br -0.029 7.029 6 C -0.118 4.118 7 C 0.106 3.894 8 N -0.523 5.523 9 C 0.032 3.968 10 C 0.171 3.829 11 H 0.047 0.953 12 C -0.165 4.165 13 C -0.511 4.511 14 H 0.071 0.929 15 C 0.085 3.915 16 N -0.899 5.899 17 Si 0.903 3.097 18 H -0.260 1.260 19 H -0.315 1.315 20 H -0.265 1.265 21 S 0.128 5.872 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.143 0.857 26 H 0.042 0.958 27 H 0.090 0.910 28 H 0.013 0.987 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.028 0.972 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.598 2.338 -12.846 18.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.308 4.308 3 C -0.147 4.147 4 C -0.192 4.192 5 Br 0.054 6.946 6 C -0.238 4.238 7 C -0.024 4.024 8 N -0.248 5.248 9 C -0.117 4.117 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.224 4.224 13 C -0.549 4.549 14 H 0.089 0.911 15 C -0.119 4.119 16 N -0.536 5.536 17 Si 0.733 3.267 18 H -0.185 1.185 19 H -0.244 1.244 20 H -0.190 1.190 21 S 0.391 5.609 22 H 0.091 0.909 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.160 0.840 26 H 0.060 0.940 27 H 0.109 0.891 28 H 0.032 0.968 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.465 1.826 -12.446 18.426 hybrid contribution -0.174 1.350 -0.570 1.476 sum -13.639 3.176 -13.015 19.118 Atomic orbital electron populations 1.20286 0.87563 1.03174 1.02546 1.24356 0.99956 0.95768 1.10675 1.19798 0.90838 0.99796 1.04302 1.20556 0.93784 0.92668 1.12164 1.96675 1.54337 1.45861 1.97688 1.24622 0.99966 0.94878 1.04352 1.20796 0.88086 0.99301 0.94215 1.62813 1.06685 1.45408 1.09934 1.22262 0.96481 0.91508 1.01418 1.19908 0.83212 0.92251 0.97971 0.93555 1.22303 1.01107 1.00881 0.98103 1.20821 1.42606 0.97747 0.93753 0.91072 1.25021 0.92825 0.99770 0.94313 1.69960 1.47372 1.29593 1.06677 0.86373 0.80613 0.80849 0.78900 1.18526 1.24435 1.19013 1.84225 0.95301 1.08728 1.72673 0.90863 0.91275 0.90574 0.83960 0.93971 0.89144 0.96840 0.89437 0.93733 0.95281 0.92968 0.93178 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.38 36.01 0.37 -0.31 16 2 C -0.19 -2.40 6.51 -36.00 -0.23 -2.63 16 3 C -0.12 -1.65 9.91 -41.19 -0.41 -2.05 16 4 C -0.10 -1.67 6.17 -41.18 -0.25 -1.92 16 5 Br -0.03 -0.51 31.61 -68.01 -2.15 -2.66 16 6 C -0.12 -1.98 5.24 -35.99 -0.19 -2.17 16 7 C 0.11 1.91 4.56 -4.98 -0.02 1.89 16 8 N -0.52 -11.15 2.90 -237.73 -0.69 -11.84 16 9 C 0.03 0.64 8.55 60.07 0.51 1.15 16 10 C 0.17 3.94 1.70 -68.86 -0.12 3.82 16 11 H 0.05 1.11 6.73 -51.93 -0.35 0.76 16 12 C -0.16 -3.25 8.39 37.16 0.31 -2.94 16 13 C -0.51 -14.06 7.75 -34.44 -0.27 -14.33 16 14 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 15 C 0.09 2.47 5.47 -17.82 -0.10 2.37 16 16 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 17 Si 0.90 23.52 25.23 -169.99 -4.29 19.23 16 18 H -0.26 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.32 -8.44 7.11 56.52 0.40 -8.03 16 20 H -0.27 -6.60 6.51 56.52 0.37 -6.23 16 21 S 0.13 1.76 21.89 -107.50 -2.35 -0.59 16 22 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 26 H 0.04 0.71 6.81 -51.93 -0.35 0.35 16 27 H 0.09 1.67 7.16 -51.93 -0.37 1.29 16 28 H 0.01 0.25 6.63 -51.93 -0.34 -0.10 16 29 H 0.09 2.01 6.99 -51.93 -0.36 1.65 16 30 H 0.04 0.83 6.09 -51.93 -0.32 0.52 16 31 H 0.03 0.50 6.50 -51.93 -0.34 0.16 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.99 6.79 -51.93 -0.35 0.63 16 34 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 301.54 15.07 4.54 4.54 Total: -1.00 -30.30 301.54 -9.04 -39.34 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -4.49 Total: -3.99 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -0.39 Total: -17.12 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.08 Total: -38.76 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -4.29 Total: 19.23 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.35 Total: -0.59 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -2.15 Total: -2.66 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.30 -9.04 -39.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453566463.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.236 kcal (2) G-P(sol) polarization free energy of solvation -30.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds