Wall clock time and date at job start Tue Mar 31 2020 11:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33400 * 125.19312 * 2 1 4 4 C 1.38464 * 114.90913 * 180.24690 * 3 2 1 5 5 Br 1.89105 * 122.54488 * 179.72412 * 4 3 2 6 6 C 1.33434 * 114.90827 * 359.49031 * 4 3 2 7 7 C 1.50693 * 125.20401 * 180.17868 * 6 4 3 8 8 N 1.46897 * 109.47347 * 90.32178 * 7 6 4 9 9 C 1.46901 * 111.00026 * 66.04628 * 8 7 6 10 10 C 1.46905 * 111.00075 * 189.99834 * 8 7 6 11 11 H 1.08999 * 109.47055 * 55.00232 * 10 8 7 12 12 C 1.52998 * 109.47238 * 295.00161 * 10 8 7 13 13 C 1.50700 * 109.47184 * 174.99947 * 10 8 7 14 14 H 1.07999 * 119.99815 * 114.95248 * 13 10 8 15 15 C 1.37874 * 120.00008 * 294.95544 * 13 10 8 16 16 N 1.31517 * 120.00019 * 177.92528 * 15 13 10 17 17 Si 1.86802 * 120.00107 * 357.92028 * 15 13 10 18 18 H 1.48505 * 109.46680 * 85.00447 * 17 15 13 19 19 H 1.48492 * 109.47166 * 205.00348 * 17 15 13 20 20 H 1.48500 * 109.46926 * 325.00738 * 17 15 13 21 21 S 1.75873 * 125.19952 * 179.97438 * 2 1 3 22 22 H 1.09001 * 109.47174 * 90.00600 * 1 2 3 23 23 H 1.09000 * 109.47242 * 210.00289 * 1 2 3 24 24 H 1.08995 * 109.47646 * 330.00427 * 1 2 3 25 25 H 1.08000 * 122.54583 * 359.97398 * 3 2 1 26 26 H 1.09002 * 109.46874 * 210.32084 * 7 6 4 27 27 H 1.09006 * 109.47155 * 330.31999 * 7 6 4 28 28 H 1.09006 * 109.47098 * 60.00280 * 9 8 7 29 29 H 1.09001 * 109.47583 * 179.97438 * 9 8 7 30 30 H 1.09001 * 109.47212 * 300.00427 * 9 8 7 31 31 H 1.09001 * 109.47105 * 54.56699 * 12 10 8 32 32 H 1.08995 * 109.47352 * 174.57089 * 12 10 8 33 33 H 1.09000 * 109.47178 * 294.57263 * 12 10 8 34 34 H 0.97000 * 120.00124 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0902 0.0000 4 6 3.6382 0.8430 -0.0054 5 35 4.9238 2.2299 -0.0142 6 6 3.9752 -0.4481 0.0010 7 6 5.3860 -0.9778 0.0009 8 7 5.8446 -1.1496 1.3858 9 6 5.0770 -2.2000 2.0681 10 6 7.2847 -1.4359 1.4318 11 1 7.8280 -0.6524 0.9036 12 6 7.5581 -2.7851 0.7641 13 6 7.7418 -1.4840 2.8670 14 1 8.1074 -2.4095 3.2866 15 6 7.6930 -0.3464 3.6445 16 7 8.0534 -0.3976 4.9083 17 14 7.1154 1.2678 2.9027 18 1 5.6330 1.3367 2.9607 19 1 7.6939 2.4001 3.6697 20 1 7.5598 1.3497 1.4882 21 16 2.5208 -1.4371 0.0006 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3634 0.8900 0.5137 25 1 1.8667 2.0897 -0.0004 26 1 5.4132 -1.9388 -0.5127 27 1 6.0389 -0.2724 -0.5132 28 1 5.2031 -3.1443 1.5385 29 1 5.4372 -2.3068 3.0913 30 1 4.0214 -1.9286 2.0806 31 1 7.1412 -2.7832 -0.2430 32 1 8.6337 -2.9534 0.7118 33 1 7.0939 -3.5801 1.3478 34 1 8.0187 0.4026 5.4554 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453566463.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:23 Heat of formation + Delta-G solvation = 21.087174 kcal Electronic energy + Delta-G solvation = -17247.595275 eV Core-core repulsion = 14545.816110 eV Total energy + Delta-G solvation = -2701.779165 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.76887 -38.55230 -34.75241 -33.62960 -31.93706 -30.89157 -29.33729 -27.44961 -26.78792 -24.43333 -23.30856 -21.04485 -19.61353 -18.83947 -18.13287 -16.90034 -16.46929 -16.13206 -15.49022 -15.12762 -14.81433 -14.80663 -14.23318 -14.01902 -13.77183 -13.51325 -13.37441 -13.11343 -12.81624 -12.73439 -12.63900 -12.27822 -12.15941 -11.83506 -11.81597 -11.64572 -11.46545 -11.15108 -10.99414 -10.69924 -9.56042 -9.31738 -8.89242 -8.23065 -6.32505 -0.19005 0.15431 0.72890 1.27769 1.43246 1.47176 1.57558 1.66917 2.51558 3.02035 3.57167 3.69431 3.93881 4.15443 4.44230 4.45886 4.48488 4.52766 4.64658 4.68310 4.74323 4.76468 4.84124 4.92901 5.03065 5.12540 5.15441 5.33576 5.33827 5.45554 5.65322 6.08795 6.42826 6.58331 6.81962 7.42544 8.88247 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.015629 B = 0.007548 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.086029 B = 3708.495600 C = 4630.054935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.170 4.170 3 C -0.139 4.139 4 C -0.103 4.103 5 Br -0.047 7.047 6 C -0.155 4.155 7 C 0.112 3.888 8 N -0.541 5.541 9 C 0.041 3.959 10 C 0.174 3.826 11 H 0.040 0.960 12 C -0.157 4.157 13 C -0.502 4.502 14 H 0.036 0.964 15 C 0.035 3.965 16 N -0.947 5.947 17 Si 0.957 3.043 18 H -0.261 1.261 19 H -0.327 1.327 20 H -0.249 1.249 21 S 0.155 5.845 22 H 0.094 0.906 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.159 0.841 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.032 0.968 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.139 2.201 -15.022 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.288 4.288 3 C -0.169 4.169 4 C -0.195 4.195 5 Br 0.036 6.964 6 C -0.275 4.275 7 C -0.017 4.017 8 N -0.266 5.266 9 C -0.107 4.107 10 C 0.069 3.931 11 H 0.058 0.942 12 C -0.216 4.216 13 C -0.540 4.540 14 H 0.055 0.945 15 C -0.164 4.164 16 N -0.587 5.587 17 Si 0.786 3.214 18 H -0.186 1.186 19 H -0.257 1.257 20 H -0.173 1.173 21 S 0.419 5.581 22 H 0.112 0.888 23 H 0.098 0.902 24 H 0.108 0.892 25 H 0.176 0.824 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.013 1.671 -14.652 21.769 hybrid contribution 0.498 1.299 0.052 1.392 sum -15.515 2.970 -14.600 21.510 Atomic orbital electron populations 1.20485 0.84638 1.04439 1.04249 1.24895 1.01710 0.94684 1.07546 1.19957 0.89896 1.01203 1.05823 1.20814 0.94549 0.92227 1.11953 1.96648 1.55369 1.46647 1.97696 1.24533 1.00430 0.95694 1.06868 1.20686 0.89084 1.00123 0.91831 1.62410 1.05563 1.45973 1.12642 1.22133 0.96929 0.92227 0.99388 1.19697 0.84435 0.93986 0.95007 0.94222 1.22177 1.01452 0.98618 0.99318 1.21063 1.41168 0.95891 0.95894 0.94542 1.25693 0.93503 1.02684 0.94495 1.70078 1.50246 1.30197 1.08149 0.85524 0.79837 0.77276 0.78762 1.18625 1.25731 1.17311 1.84095 0.93729 1.08449 1.71870 0.88798 0.90156 0.89153 0.82350 0.92220 0.89716 0.94991 0.93092 0.92203 0.92247 0.92893 0.93484 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.38 71.24 0.74 -0.31 16 2 C -0.17 -3.67 6.51 24.59 0.16 -3.51 16 3 C -0.14 -3.52 9.91 21.23 0.21 -3.30 16 4 C -0.10 -3.20 6.17 21.24 0.13 -3.07 16 5 Br -0.05 -1.58 31.61 -20.37 -0.64 -2.22 16 6 C -0.15 -4.82 5.24 24.60 0.13 -4.69 16 7 C 0.11 3.79 4.56 85.56 0.39 4.18 16 8 N -0.54 -22.30 2.90 -906.03 -2.62 -24.92 16 9 C 0.04 1.62 8.55 127.69 1.09 2.71 16 10 C 0.17 7.88 1.70 44.17 0.07 7.96 16 11 H 0.04 1.86 6.73 -2.39 -0.02 1.84 16 12 C -0.16 -5.90 8.39 71.98 0.60 -5.29 16 13 C -0.50 -28.14 7.75 25.60 0.20 -27.94 16 14 H 0.04 2.25 7.99 -2.91 -0.02 2.23 16 15 C 0.04 2.09 5.47 84.65 0.46 2.56 16 16 N -0.95 -60.27 13.96 21.45 0.30 -59.97 16 17 Si 0.96 49.41 25.23 68.60 1.73 51.14 16 18 H -0.26 -13.40 7.11 99.48 0.71 -12.69 16 19 H -0.33 -17.40 7.11 99.48 0.71 -16.69 16 20 H -0.25 -12.01 6.51 99.48 0.65 -11.37 16 21 S 0.16 3.76 21.89 -56.49 -1.24 2.53 16 22 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 26 H 0.06 1.80 6.81 -2.39 -0.02 1.78 16 27 H 0.08 2.95 7.16 -2.38 -0.02 2.93 16 28 H 0.03 1.11 6.63 -2.38 -0.02 1.10 16 29 H 0.05 2.35 6.99 -2.39 -0.02 2.34 16 30 H 0.06 2.13 6.09 -2.39 -0.01 2.11 16 31 H 0.06 1.87 6.50 -2.39 -0.02 1.85 16 32 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.05 1.78 6.79 -2.39 -0.02 1.76 16 34 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -66.45 301.54 2.75 -63.70 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: 1.04 Total: 0.46 kcal Atomic # 6 Polarization: -34.90 SS G_CDS: 4.19 Total: -30.71 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -2.33 Total: -84.89 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 1.73 Total: 51.14 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -1.24 Total: 2.53 kcal Atomic # 35 Polarization: -1.58 SS G_CDS: -0.64 Total: -2.22 kcal Total: -66.45 2.75 -63.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453566463.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.782 kcal (2) G-P(sol) polarization free energy of solvation -66.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds