Wall clock time and date at job start Tue Mar 31 2020 12:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47190 * 2 1 4 4 C 1.50698 * 109.46644 * 240.00429 * 2 1 3 5 5 H 1.08010 * 119.99765 * 239.99771 * 4 2 1 6 6 C 1.37872 * 120.00736 * 59.99818 * 4 2 1 7 7 N 1.31523 * 119.99548 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00627 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47183 * 59.99833 * 8 6 4 10 10 H 1.48504 * 109.47670 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47006 * 300.00098 * 8 6 4 12 12 C 1.52993 * 109.47206 * 120.00339 * 2 1 3 13 13 N 1.46905 * 109.47039 * 299.99787 * 12 2 1 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.46943 * 180.02562 * 14 13 12 16 16 C 1.33399 * 125.20248 * 89.99843 * 15 14 13 17 17 C 1.38459 * 114.91568 * 179.97438 * 16 15 14 18 18 Br 1.89101 * 122.54797 * 179.97438 * 17 16 15 19 19 C 1.33435 * 114.90783 * 0.02562 * 17 16 15 20 20 S 1.75884 * 125.19269 * 269.69283 * 15 14 13 21 21 H 1.08999 * 109.47049 * 299.99976 * 1 2 3 22 22 H 1.09005 * 109.47151 * 59.99619 * 1 2 3 23 23 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 24 24 H 1.08991 * 109.46963 * 180.02562 * 3 2 1 25 25 H 1.09005 * 109.47384 * 300.00238 * 3 2 1 26 26 H 1.08999 * 109.47105 * 60.00059 * 3 2 1 27 27 H 0.97002 * 119.99722 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.47393 * 180.02562 * 12 2 1 29 29 H 1.08998 * 109.47408 * 59.99713 * 12 2 1 30 30 H 1.00901 * 110.99869 * 56.04956 * 13 12 2 31 31 H 1.09004 * 109.47031 * 299.99620 * 14 13 12 32 32 H 1.08995 * 109.47111 * 59.99900 * 14 13 12 33 33 H 1.08003 * 122.53698 * 0.02562 * 16 15 14 34 34 H 1.07995 * 125.20339 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9426 0.8297 -2.6034 8 14 2.3222 -1.1194 -4.0080 9 1 1.8278 -2.5197 -4.0083 10 1 1.8276 -0.4191 -5.2206 11 1 3.8073 -1.1188 -4.0079 12 6 2.0400 -0.7213 1.2491 13 7 1.5504 -0.0288 2.4486 14 6 2.0219 -0.6946 3.6702 15 6 1.5003 0.0419 4.8771 16 6 0.3446 -0.2122 5.4929 17 6 0.0751 0.5962 6.5842 18 35 -1.5019 0.4236 7.6134 19 6 1.0122 1.5070 6.8539 20 16 2.3260 1.3630 5.6934 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 3.1299 1.4425 -0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 0.7079 1.1609 -3.4844 28 1 3.1300 -0.7209 1.2494 29 1 1.6767 -1.7489 1.2492 30 1 0.5438 0.0412 2.4402 31 1 1.6587 -1.7223 3.6872 32 1 3.1117 -0.6941 3.6868 33 1 -0.3293 -0.9901 5.1655 34 1 0.9724 2.2201 7.6640 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459686539.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:26 Heat of formation + Delta-G solvation = 14.877810 kcal Electronic energy + Delta-G solvation = -16371.469013 eV Core-core repulsion = 13669.420589 eV Total energy + Delta-G solvation = -2702.048423 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -39.36486 -38.40172 -35.72808 -33.28261 -31.93711 -30.25413 -27.49533 -27.27887 -27.10942 -24.93104 -23.16949 -20.35893 -20.15882 -18.49394 -17.78357 -16.85541 -16.44972 -16.21996 -15.69848 -15.04978 -14.52831 -14.27353 -14.04358 -13.93045 -13.89058 -13.32282 -13.08663 -12.92610 -12.64663 -12.51898 -12.41812 -12.10473 -12.05846 -11.84969 -11.65211 -11.29952 -11.21615 -10.96874 -10.59758 -10.32709 -9.79174 -9.35350 -9.19320 -7.95168 -6.12224 -0.14979 0.18326 0.73426 1.34317 1.42458 1.44857 1.45823 1.52319 2.47812 3.27076 3.46423 3.79666 4.09814 4.26466 4.39662 4.56498 4.60648 4.68412 4.88522 4.88950 5.03853 5.05219 5.17416 5.20901 5.29955 5.44243 5.54942 5.71368 5.78278 6.12822 6.23094 6.34375 6.48283 6.59365 6.97292 7.55475 9.02715 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.030141 B = 0.002828 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.743843 B = 9897.977858 C =10330.224752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.059 3.941 3 C -0.105 4.105 4 C -0.527 4.527 5 H 0.047 0.953 6 C 0.022 3.978 7 N -0.903 5.903 8 Si 0.944 3.056 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.090 3.910 13 N -0.684 5.684 14 C 0.127 3.873 15 C -0.168 4.168 16 C -0.128 4.128 17 C -0.113 4.113 18 Br -0.030 7.030 19 C -0.188 4.188 20 S 0.175 5.825 21 H 0.032 0.968 22 H 0.054 0.946 23 H 0.018 0.982 24 H 0.011 0.989 25 H 0.047 0.953 26 H 0.033 0.967 27 H 0.257 0.743 28 H 0.054 0.946 29 H 0.015 0.985 30 H 0.341 0.659 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.148 0.852 34 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.143 0.024 22.876 22.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.059 3.941 3 C -0.163 4.163 4 C -0.566 4.566 5 H 0.065 0.935 6 C -0.177 4.177 7 N -0.542 5.542 8 Si 0.771 3.229 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.039 4.039 13 N -0.317 5.317 14 C -0.003 4.003 15 C -0.287 4.287 16 C -0.160 4.160 17 C -0.205 4.205 18 Br 0.053 6.947 19 C -0.326 4.326 20 S 0.439 5.561 21 H 0.051 0.949 22 H 0.073 0.927 23 H 0.037 0.963 24 H 0.030 0.970 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.033 0.967 30 H 0.160 0.840 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.166 0.834 34 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -0.904 1.289 22.883 22.937 hybrid contribution -1.323 -1.858 -1.142 2.550 sum -2.227 -0.569 21.741 21.862 Atomic orbital electron populations 1.21664 0.98238 0.98078 0.99891 1.18143 0.92355 0.92878 0.90746 1.21462 0.97096 0.98422 0.99288 1.21418 1.31312 1.11974 0.91889 0.93492 1.25534 0.95348 0.95623 1.01179 1.69969 1.37362 1.23610 1.23300 0.85842 0.78665 0.78804 0.79617 1.20065 1.21268 1.20106 1.21846 0.98597 0.94102 0.89348 1.60587 1.16729 1.53693 1.00655 1.20383 1.00364 0.94340 0.85227 1.24439 0.99501 1.02499 1.02284 1.20004 0.97708 1.02339 0.95915 1.20704 0.96633 1.02489 1.00678 1.96686 1.31000 1.97957 1.69065 1.26027 0.97540 1.03763 1.05319 1.84431 1.20115 1.30691 1.20886 0.94947 0.92681 0.96332 0.96985 0.93450 0.94838 0.93374 0.92787 0.96684 0.83991 0.92713 0.89726 0.83394 0.78915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 7.92 71.98 0.57 -5.03 16 2 C 0.06 2.80 0.57 -52.93 -0.03 2.77 16 3 C -0.10 -5.05 8.09 71.98 0.58 -4.47 16 4 C -0.53 -28.02 8.01 25.60 0.21 -27.81 16 5 H 0.05 2.47 7.74 -2.91 -0.02 2.45 16 6 C 0.02 1.20 5.15 84.65 0.44 1.63 16 7 N -0.90 -50.20 9.35 21.45 0.20 -50.00 16 8 Si 0.94 42.95 29.54 68.60 2.03 44.97 16 9 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 12 C 0.09 3.53 4.59 86.30 0.40 3.93 16 13 N -0.68 -22.55 5.70 -517.93 -2.95 -25.50 16 14 C 0.13 3.34 6.18 85.56 0.53 3.87 16 15 C -0.17 -4.02 6.02 24.59 0.15 -3.87 16 16 C -0.13 -2.93 9.91 21.23 0.21 -2.72 16 17 C -0.11 -2.38 6.17 21.23 0.13 -2.25 16 18 Br -0.03 -0.58 33.87 -20.37 -0.69 -1.27 16 19 C -0.19 -3.52 11.05 66.73 0.74 -2.79 16 20 S 0.18 3.63 23.33 -56.49 -1.32 2.32 16 21 H 0.03 1.32 6.57 -2.39 -0.02 1.30 16 22 H 0.05 2.88 6.07 -2.38 -0.01 2.87 16 23 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.05 2.53 6.07 -2.38 -0.01 2.52 16 26 H 0.03 1.47 7.60 -2.39 -0.02 1.46 16 27 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 28 H 0.05 2.15 8.14 -2.39 -0.02 2.14 16 29 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.34 11.30 6.76 -89.69 -0.61 10.70 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 34 H 0.19 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -55.70 310.85 1.68 -54.02 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.49 Total: 12.20 kcal Atomic # 6 Polarization: -40.65 SS G_CDS: 3.91 Total: -36.74 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -2.75 Total: -75.50 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -1.32 Total: 2.32 kcal Atomic # 35 Polarization: -0.58 SS G_CDS: -0.69 Total: -1.27 kcal Total: -55.70 1.68 -54.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459686539.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.902 kcal (2) G-P(sol) polarization free energy of solvation -55.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds